RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TOPAZ1Q8N9V7 1692 aa21.15■□□□□ 0.98
TRIM54-204ENST00000488321 TRPC5Q9UL62 973 aaPredicted RBP21.14■□□□□ 0.97
TRIM54-204ENST00000488321 TRPM3Q9HCF6 1732 aaPredicted RBP21.13■□□□□ 0.97
TRIM54-204ENST00000488321 ST20-MTHFSA0A0A6YYL1 179 aa21.13■□□□□ 0.97
TRIM54-204ENST00000488321 RBM6P78332 1123 aaKnown RBP21.13■□□□□ 0.97
TRIM54-204ENST00000488321 ATAD2Q6PL18 1390 aa21.12■□□□□ 0.97
TRIM54-204ENST00000488321 ABTB2Q8N961 1025 aa21.12■□□□□ 0.97
TRIM54-204ENST00000488321 BCL9LQ86UU0 1499 aa21.09■□□□□ 0.97
TRIM54-204ENST00000488321 UNC5CLQ8IV45 518 aa21.09■□□□□ 0.97
TRIM54-204ENST00000488321 TMC1Q8TDI8 760 aa21.09■□□□□ 0.97
TRIM54-204ENST00000488321 USP47Q96K76 1375 aa21.09■□□□□ 0.97
TRIM54-204ENST00000488321 FAM83GA6ND36 823 aa21.08■□□□□ 0.97
TRIM54-204ENST00000488321 USP6P35125 1406 aa21.08■□□□□ 0.97
TRIM54-204ENST00000488321 ALS2Q96Q42 1657 aa21.08■□□□□ 0.96
TRIM54-204ENST00000488321 ATRNO75882 1429 aa21.07■□□□□ 0.96
TRIM54-204ENST00000488321 SLIT2O94813 1529 aa21.07■□□□□ 0.96
TRIM54-204ENST00000488321 NLRP13Q86W25 1043 aa21.06■□□□□ 0.96
TRIM54-204ENST00000488321 TESK2Q96S53 571 aa21.06■□□□□ 0.96
TRIM54-204ENST00000488321 ZNF692Q9BU19 519 aaPredicted RBP21.06■□□□□ 0.96
TRIM54-204ENST00000488321 PRDM11Q9NQV5 511 aa21.06■□□□□ 0.96
TRIM54-204ENST00000488321 BRD4O60885 1362 aaPredicted RBP21.06■□□□□ 0.96
TRIM54-204ENST00000488321 SLC24A1O60721 1099 aa21.05■□□□□ 0.96
TRIM54-204ENST00000488321 CCDC9Q9Y3X0 531 aaKnown RBP21.05■□□□□ 0.96
TRIM54-204ENST00000488321 ZC3H6P61129 1189 aaKnown RBP21.04■□□□□ 0.96
TRIM54-204ENST00000488321 GJD4Q96KN9 370 aaPredicted RBP21.04■□□□□ 0.96
TRIM54-204ENST00000488321 BTG4Q9NY30 223 aa21.04■□□□□ 0.96
TRIM54-204ENST00000488321 CDK12Q9NYV4 1490 aaPredicted RBP21.04■□□□□ 0.96
TRIM54-204ENST00000488321 NLRP6P59044 892 aa21.03■□□□□ 0.96
TRIM54-204ENST00000488321 RGS12O14924 1447 aa21.03■□□□□ 0.96
TRIM54-204ENST00000488321 KTN1Q86UP2 1357 aaKnown RBP21.02■□□□□ 0.96
TRIM54-204ENST00000488321 KIAA0232Q92628 1395 aa21.02■□□□□ 0.96
TRIM54-204ENST00000488321 ABCA3Q99758 1704 aa21.02■□□□□ 0.96
TRIM54-204ENST00000488321 SLC12A5Q9H2X9 1139 aa21.02■□□□□ 0.96
TRIM54-204ENST00000488321 TTC21BQ7Z4L5 1316 aa21.02■□□□□ 0.95
TRIM54-204ENST00000488321 MARF1Q9Y4F3 1742 aaKnown RBP21.01■□□□□ 0.95
TRIM54-204ENST00000488321 TMF1P82094 1093 aa21.01■□□□□ 0.95
TRIM54-204ENST00000488321 CHRNA2Q15822 529 aa21.01■□□□□ 0.95
TRIM54-204ENST00000488321 HDGFL2Q7Z4V5 671 aaPredicted RBP21.01■□□□□ 0.95
TRIM54-204ENST00000488321 PUS7Q96PZ0 661 aaKnown RBP21■□□□□ 0.95
TRIM54-204ENST00000488321 CPSF1Q10570 1443 aaKnown RBP21■□□□□ 0.95
TRIM54-204ENST00000488321 USP19O94966 1318 aa21■□□□□ 0.95
TRIM54-204ENST00000488321 SSH2Q76I76 1423 aa20.99■□□□□ 0.95
TRIM54-204ENST00000488321 GCP02774 474 aa20.99■□□□□ 0.95
TRIM54-204ENST00000488321 VPS72Q15906 364 aa20.99■□□□□ 0.95
TRIM54-204ENST00000488321 ZBTB7CA1YPR0 619 aa20.98■□□□□ 0.95
TRIM54-204ENST00000488321 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.98■□□□□ 0.95
TRIM54-204ENST00000488321 TERF2IPQ9NYB0 399 aa20.98■□□□□ 0.95
TRIM54-204ENST00000488321 TTC21AQ8NDW8 1320 aa20.97■□□□□ 0.95
TRIM54-204ENST00000488321 PHRF1Q9P1Y6 1649 aaKnown RBP20.94■□□□□ 0.94
TRIM54-204ENST00000488321 PLCH1Q4KWH8 1693 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 SOX12O15370 315 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 CDCA8Q53HL2 280 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 STRN4Q9NRL3 753 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 CRYBG1Q9Y4K1 1723 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 COL14A1Q05707 1796 aaKnown RBP20.94■□□□□ 0.94
TRIM54-204ENST00000488321 A0A1W2PP64 1363 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 CD163L1Q9NR16 1453 aa20.94■□□□□ 0.94
TRIM54-204ENST00000488321 A0A0G2JS52 829 aa20.93■□□□□ 0.94
TRIM54-204ENST00000488321 MYT1Q01538 1121 aa20.93■□□□□ 0.94
TRIM54-204ENST00000488321 CPDO75976 1380 aa20.93■□□□□ 0.94
TRIM54-204ENST00000488321 NINLQ9Y2I6 1382 aa20.93■□□□□ 0.94
TRIM54-204ENST00000488321 NRKQ7Z2Y5 1582 aa20.93■□□□□ 0.94
TRIM54-204ENST00000488321 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.92■□□□□ 0.94
TRIM54-204ENST00000488321 EVA1CP58658 441 aa20.92■□□□□ 0.94
TRIM54-204ENST00000488321 NME9Q86XW9 330 aa20.92■□□□□ 0.94
TRIM54-204ENST00000488321 GLI3P10071 1580 aa20.91■□□□□ 0.94
TRIM54-204ENST00000488321 NWD2Q9ULI1 1742 aa20.9■□□□□ 0.94
TRIM54-204ENST00000488321 EDC4Q6P2E9 1401 aaKnown RBP20.9■□□□□ 0.94
TRIM54-204ENST00000488321 EIF4G2P78344 907 aaKnown RBP eCLIP20.9■□□□□ 0.94
TRIM54-204ENST00000488321 KCNH5Q8NCM2 988 aa20.9■□□□□ 0.94
TRIM54-204ENST00000488321 UPF1Q92900 1129 aaKnown RBP eCLIP20.9■□□□□ 0.94
TRIM54-204ENST00000488321 ZRANB1Q9UGI0 708 aa20.9■□□□□ 0.94
TRIM54-204ENST00000488321 FAM98CQ17RN3 349 aaKnown RBP20.89■□□□□ 0.93
TRIM54-204ENST00000488321 SEPT12Q8IYM1 358 aa20.89■□□□□ 0.93
TRIM54-204ENST00000488321 PIK3C2AO00443 1686 aa20.89■□□□□ 0.93
TRIM54-204ENST00000488321 SLIT3O75094 1523 aa20.88■□□□□ 0.93
TRIM54-204ENST00000488321 SPATA31A5Q5VU36 1347 aa20.88■□□□□ 0.93
TRIM54-204ENST00000488321 SPATA31A7Q8IWB4 1347 aa20.88■□□□□ 0.93
TRIM54-204ENST00000488321 AKAP12Q02952 1782 aa20.87■□□□□ 0.93
TRIM54-204ENST00000488321 HSPA5P11021 654 aaKnown RBP20.87■□□□□ 0.93
TRIM54-204ENST00000488321 POLR3GLQ9BT43 218 aa20.87■□□□□ 0.93
TRIM54-204ENST00000488321 USP35Q9P2H5 1018 aa20.87■□□□□ 0.93
TRIM54-204ENST00000488321 ANKRD36BQ8N2N9 1353 aa20.85■□□□□ 0.93
TRIM54-204ENST00000488321 NRAPQ86VF7 1730 aa20.85■□□□□ 0.93
TRIM54-204ENST00000488321 ONECUT3O60422 494 aaPredicted RBP20.85■□□□□ 0.93
TRIM54-204ENST00000488321 AATKQ6ZMQ8 1374 aa20.85■□□□□ 0.93
TRIM54-204ENST00000488321 USP31Q70CQ4 1352 aa20.85■□□□□ 0.93
TRIM54-204ENST00000488321 MON2Q7Z3U7 1717 aa20.84■□□□□ 0.93
TRIM54-204ENST00000488321 SPATA31A1Q5TZJ5 1347 aa20.84■□□□□ 0.93
TRIM54-204ENST00000488321 LARP1Q6PKG0 1096 aaKnown RBP20.84■□□□□ 0.93
TRIM54-204ENST00000488321 CAMTA1Q9Y6Y1 1673 aa20.83■□□□□ 0.93
TRIM54-204ENST00000488321 ARHGEF25Q86VW2 580 aa20.83■□□□□ 0.93
TRIM54-204ENST00000488321 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
TRIM54-204ENST00000488321 COG3Q96JB2 828 aa20.8■□□□□ 0.92
TRIM54-204ENST00000488321 AXIN2Q9Y2T1 843 aa20.8■□□□□ 0.92
TRIM54-204ENST00000488321 COL5A2P05997 1499 aaPredicted RBP20.8■□□□□ 0.92
TRIM54-204ENST00000488321 LMO7Q8WWI1 1683 aa20.78■□□□□ 0.92
TRIM54-204ENST00000488321 CSB-PGBD3P0DP91 1061 aa20.78■□□□□ 0.92
TRIM54-204ENST00000488321 TOM1L2Q6ZVM7 507 aa20.78■□□□□ 0.92
TRIM54-204ENST00000488321 TCP11L2Q8N4U5 519 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms