RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 TOPAZ1Q8N9V7 1692 aa9.45□□□□□ -0.9
SF3A3-206ENST00000487062 MON2Q7Z3U7 1717 aa9.45□□□□□ -0.9
SF3A3-206ENST00000487062 TPRNQ4KMQ1 711 aa9.44□□□□□ -0.9
SF3A3-206ENST00000487062 ZBED9Q6R2W3 1325 aa9.44□□□□□ -0.9
SF3A3-206ENST00000487062 WDR43Q15061 677 aaKnown RBP eCLIP9.43□□□□□ -0.9
SF3A3-206ENST00000487062 ZNF692Q9BU19 519 aaPredicted RBP9.43□□□□□ -0.9
SF3A3-206ENST00000487062 FMN2Q9NZ56 1722 aa9.42□□□□□ -0.9
SF3A3-206ENST00000487062 CPSF1Q10570 1443 aaKnown RBP9.42□□□□□ -0.9
SF3A3-206ENST00000487062 EDC4Q6P2E9 1401 aaKnown RBP9.42□□□□□ -0.9
SF3A3-206ENST00000487062 KCNA6P17658 529 aa9.42□□□□□ -0.9
SF3A3-206ENST00000487062 BBXQ8WY36 941 aaPredicted RBP9.42□□□□□ -0.9
SF3A3-206ENST00000487062 NWD1Q149M9 1564 aa9.41□□□□□ -0.9
SF3A3-206ENST00000487062 POLR3AO14802 1390 aaPredicted RBP9.41□□□□□ -0.9
SF3A3-206ENST00000487062 NCKAP5LQ9HCH0 1330 aa9.41□□□□□ -0.9
SF3A3-206ENST00000487062 CFAP53Q96M91 514 aa9.41□□□□□ -0.9
SF3A3-206ENST00000487062 RNF39Q9H2S5 420 aa9.41□□□□□ -0.9
SF3A3-206ENST00000487062 RGPD8O14715 1765 aaPredicted RBP9.41□□□□□ -0.9
SF3A3-206ENST00000487062 NALCNQ8IZF0 1738 aa9.41□□□□□ -0.9
SF3A3-206ENST00000487062 ANKARQ7Z5J8 1434 aa9.4□□□□□ -0.9
SF3A3-206ENST00000487062 PRR36Q9H6K5 1346 aa9.4□□□□□ -0.9
SF3A3-206ENST00000487062 PLEKHG3A1L390 1219 aa9.4□□□□□ -0.9
SF3A3-206ENST00000487062 GTF3C3Q9Y5Q9 886 aa9.4□□□□□ -0.9
SF3A3-206ENST00000487062 BLMP54132 1417 aaPredicted RBP9.39□□□□□ -0.91
SF3A3-206ENST00000487062 FYB1O15117 783 aa9.39□□□□□ -0.91
SF3A3-206ENST00000487062 GGNBP2Q9H3C7 697 aa9.39□□□□□ -0.91
SF3A3-206ENST00000487062 NRKQ7Z2Y5 1582 aa9.38□□□□□ -0.91
SF3A3-206ENST00000487062 KDM4FA0A1W2PPD8 638 aa9.38□□□□□ -0.91
SF3A3-206ENST00000487062 TNNT2P45379 298 aaPredicted RBP9.38□□□□□ -0.91
SF3A3-206ENST00000487062 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.38□□□□□ -0.91
SF3A3-206ENST00000487062 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.38□□□□□ -0.91
SF3A3-206ENST00000487062 NKTRP30414 1462 aaKnown RBP9.38□□□□□ -0.91
SF3A3-206ENST00000487062 ADGRL3Q9HAR2 1447 aa9.38□□□□□ -0.91
SF3A3-206ENST00000487062 MAP2P11137 1827 aaKnown RBP9.38□□□□□ -0.91
SF3A3-206ENST00000487062 ACEP12821 1306 aa9.37□□□□□ -0.91
SF3A3-206ENST00000487062 SHPRHQ149N8 1683 aa9.37□□□□□ -0.91
SF3A3-206ENST00000487062 MTHFSP49914 203 aa9.37□□□□□ -0.91
SF3A3-206ENST00000487062 PELP1Q8IZL8 1130 aaKnown RBP9.37□□□□□ -0.91
SF3A3-206ENST00000487062 ADAMTS8Q9UP79 889 aa9.37□□□□□ -0.91
SF3A3-206ENST00000487062 NUTM2FA1L443 756 aa9.36□□□□□ -0.91
SF3A3-206ENST00000487062 C14orf37Q86TY3 774 aa9.36□□□□□ -0.91
SF3A3-206ENST00000487062 COG3Q96JB2 828 aa9.36□□□□□ -0.91
SF3A3-206ENST00000487062 USP6P35125 1406 aa9.36□□□□□ -0.91
SF3A3-206ENST00000487062 TTC21AQ8NDW8 1320 aa9.35□□□□□ -0.91
SF3A3-206ENST00000487062 PDE3BQ13370 1112 aa9.35□□□□□ -0.91
SF3A3-206ENST00000487062 PROSER2Q86WR7 435 aaPredicted RBP9.35□□□□□ -0.91
SF3A3-206ENST00000487062 NGEFQ8N5V2 710 aa9.35□□□□□ -0.91
SF3A3-206ENST00000487062 NGDNQ8NEJ9 315 aaKnown RBP9.35□□□□□ -0.91
SF3A3-206ENST00000487062 NUDCQ9Y266 331 aa9.35□□□□□ -0.91
SF3A3-206ENST00000487062 LMTK3Q96Q04 1460 aa9.34□□□□□ -0.91
SF3A3-206ENST00000487062 TTC21BQ7Z4L5 1316 aa9.34□□□□□ -0.91
SF3A3-206ENST00000487062 NEFLP07196 543 aa9.34□□□□□ -0.91
SF3A3-206ENST00000487062 NME9Q86XW9 330 aa9.34□□□□□ -0.91
SF3A3-206ENST00000487062 SMG6Q86US8 1419 aaKnown RBP9.33□□□□□ -0.92
SF3A3-206ENST00000487062 NCOA3Q9Y6Q9 1424 aa9.33□□□□□ -0.92
SF3A3-206ENST00000487062 STRCQ7RTU9 1775 aa9.33□□□□□ -0.92
SF3A3-206ENST00000487062 HSPA2P54652 639 aa9.33□□□□□ -0.92
SF3A3-206ENST00000487062 PMFBP1Q8TBY8 1022 aa9.33□□□□□ -0.92
SF3A3-206ENST00000487062 AATKQ6ZMQ8 1374 aa9.33□□□□□ -0.92
SF3A3-206ENST00000487062 PAXIP1Q6ZW49 1069 aaPredicted RBP9.32□□□□□ -0.92
SF3A3-206ENST00000487062 PNNQ9H307 717 aaKnown RBP9.32□□□□□ -0.92
SF3A3-206ENST00000487062 PHF8Q9UPP1 1060 aa9.32□□□□□ -0.92
SF3A3-206ENST00000487062 KIF1AQ12756 1690 aa9.32□□□□□ -0.92
SF3A3-206ENST00000487062 USP54Q70EL1 1684 aa9.32□□□□□ -0.92
SF3A3-206ENST00000487062 STRCP1A6NGW2 1772 aa9.32□□□□□ -0.92
SF3A3-206ENST00000487062 SSH2Q76I76 1423 aa9.31□□□□□ -0.92
SF3A3-206ENST00000487062 DIAPH1O60610 1272 aaKnown RBP9.31□□□□□ -0.92
SF3A3-206ENST00000487062 COL3A1P02461 1466 aaPredicted RBP9.31□□□□□ -0.92
SF3A3-206ENST00000487062 CDK12Q9NYV4 1490 aaPredicted RBP9.31□□□□□ -0.92
SF3A3-206ENST00000487062 OVOS2A0A0J9YW53 1432 aa9.31□□□□□ -0.92
SF3A3-206ENST00000487062 OVOS2Q6IE36 1432 aa9.31□□□□□ -0.92
SF3A3-206ENST00000487062 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 PNPLA6Q8IY17 1366 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 CCDC146Q8IYE0 955 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 SPOCK2Q92563 424 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 RUNDC1Q96C34 613 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 C19orf44Q9H6X5 657 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 POLKQ9UBT6 870 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 SALL2Q9Y467 1007 aaPredicted RBP9.3□□□□□ -0.92
SF3A3-206ENST00000487062 DCCP43146 1447 aa9.3□□□□□ -0.92
SF3A3-206ENST00000487062 PIK3C2AO00443 1686 aa9.29□□□□□ -0.92
SF3A3-206ENST00000487062 U2SURPO15042 1029 aaKnown RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 PPM1GO15355 546 aaPredicted RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 ECM2O94769 699 aaPredicted RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 U2AF1L5P0DN76 240 aaPredicted RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 U2AF1Q01081 240 aaKnown RBP eCLIP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 C1QBPQ07021 282 aaKnown RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 ESCO1Q5FWF5 840 aa9.29□□□□□ -0.92
SF3A3-206ENST00000487062 RBM33Q96EV2 1170 aaKnown RBP9.29□□□□□ -0.92
SF3A3-206ENST00000487062 ZRANB1Q9UGI0 708 aa9.29□□□□□ -0.92
SF3A3-206ENST00000487062 LRRC7Q96NW7 1537 aa9.29□□□□□ -0.92
SF3A3-206ENST00000487062 TMEM94Q12767 1356 aa9.28□□□□□ -0.92
SF3A3-206ENST00000487062 SENP3-EIF4A1A0A087X0R7 540 aa9.28□□□□□ -0.92
SF3A3-206ENST00000487062 APAF1O14727 1248 aa9.28□□□□□ -0.92
SF3A3-206ENST00000487062 NEFMP07197 916 aa9.28□□□□□ -0.92
SF3A3-206ENST00000487062 ATF3P18847 181 aa9.28□□□□□ -0.92
SF3A3-206ENST00000487062 XIRP1Q702N8 1843 aaKnown RBP9.27□□□□□ -0.93
SF3A3-206ENST00000487062 PSME1Q06323 249 aa9.27□□□□□ -0.93
SF3A3-206ENST00000487062 GOLGA2Q08379 1002 aa9.27□□□□□ -0.93
SF3A3-206ENST00000487062 CFAP44Q96MT7 982 aa9.27□□□□□ -0.93
SF3A3-206ENST00000487062 SUPT16HQ9Y5B9 1047 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms