RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SPIRE2Q8WWL2 714 aa7.35□□□□□ -1.23
PTCD3-216ENST00000487043 HLA-CQ95604 372 aa7.35□□□□□ -1.23
PTCD3-216ENST00000487043 SPDYE5A6NIY4 337 aa7.34□□□□□ -1.23
PTCD3-216ENST00000487043 J3QL48 77 aa7.34□□□□□ -1.23
PTCD3-216ENST00000487043 SNRKQ9NRH2 765 aa7.34□□□□□ -1.23
PTCD3-216ENST00000487043 PODXL2Q9NZ53 605 aa7.34□□□□□ -1.23
PTCD3-216ENST00000487043 CSPP1Q1MSJ5 1256 aa7.33□□□□□ -1.24
PTCD3-216ENST00000487043 NUTM1Q86Y26 1132 aa7.33□□□□□ -1.24
PTCD3-216ENST00000487043 BANK1Q8NDB2 785 aa7.33□□□□□ -1.24
PTCD3-216ENST00000487043 ATP13A2Q9NQ11 1180 aa7.33□□□□□ -1.24
PTCD3-216ENST00000487043 HOXA2O43364 376 aa7.32□□□□□ -1.24
PTCD3-216ENST00000487043 GUCA2AQ02747 115 aa7.32□□□□□ -1.24
PTCD3-216ENST00000487043 TMEM259Q4ZIN3 620 aa7.32□□□□□ -1.24
PTCD3-216ENST00000487043 LCE2AQ5TA79 106 aaPredicted RBP7.32□□□□□ -1.24
PTCD3-216ENST00000487043 RC3H1Q5TC82 1133 aaKnown RBP7.32□□□□□ -1.24
PTCD3-216ENST00000487043 FNBP4Q8N3X1 1017 aaPredicted RBP7.32□□□□□ -1.24
PTCD3-216ENST00000487043 COG6Q9Y2V7 657 aa7.32□□□□□ -1.24
PTCD3-216ENST00000487043 TRIM26Q12899 539 aaPredicted RBP7.31□□□□□ -1.24
PTCD3-216ENST00000487043 PPP2R2DQ66LE6 453 aa7.31□□□□□ -1.24
PTCD3-216ENST00000487043 HPS1Q92902 700 aa7.31□□□□□ -1.24
PTCD3-216ENST00000487043 SENP2Q9HC62 589 aa7.31□□□□□ -1.24
PTCD3-216ENST00000487043 MOXD2PA6NHM9 499 aa7.3□□□□□ -1.24
PTCD3-216ENST00000487043 SPTLC1O15269 473 aa7.3□□□□□ -1.24
PTCD3-216ENST00000487043 SNRPBP14678 240 aaKnown RBP7.3□□□□□ -1.24
PTCD3-216ENST00000487043 WNT7BP56706 349 aa7.3□□□□□ -1.24
PTCD3-216ENST00000487043 RSBN1LQ6PCB5 846 aaPredicted RBP7.3□□□□□ -1.24
PTCD3-216ENST00000487043 SYMPKQ92797 1274 aaKnown RBP7.3□□□□□ -1.24
PTCD3-216ENST00000487043 ALDH1A1P00352 501 aa7.29□□□□□ -1.24
PTCD3-216ENST00000487043 JUNDP17535 347 aa7.29□□□□□ -1.24
PTCD3-216ENST00000487043 NDUFV2P19404 249 aa7.29□□□□□ -1.24
PTCD3-216ENST00000487043 SKOR1P84550 965 aa7.29□□□□□ -1.24
PTCD3-216ENST00000487043 NFX1Q12986 1120 aaKnown RBP7.28□□□□□ -1.24
PTCD3-216ENST00000487043 QPCTQ16769 361 aa7.28□□□□□ -1.24
PTCD3-216ENST00000487043 TUSC1Q2TAM9 212 aa7.28□□□□□ -1.24
PTCD3-216ENST00000487043 CCDC97Q96F63 343 aaPredicted RBP7.28□□□□□ -1.24
PTCD3-216ENST00000487043 TRIM47Q96LD4 638 aa7.28□□□□□ -1.24
PTCD3-216ENST00000487043 NUDT12Q9BQG2 462 aa7.28□□□□□ -1.24
PTCD3-216ENST00000487043 ZNF330Q9Y3S2 320 aaPredicted RBP7.28□□□□□ -1.24
PTCD3-216ENST00000487043 RETREG3Q86VR2 466 aa7.27□□□□□ -1.25
PTCD3-216ENST00000487043 EHBP1Q8NDI1 1231 aa7.27□□□□□ -1.25
PTCD3-216ENST00000487043 KIFC2Q96AC6 838 aa7.27□□□□□ -1.25
PTCD3-216ENST00000487043 SERPINA10Q9UK55 444 aa7.27□□□□□ -1.25
PTCD3-216ENST00000487043 PCDHB15Q9Y5E8 787 aa7.27□□□□□ -1.25
PTCD3-216ENST00000487043 NUTM2BA6NNL0 878 aaPredicted RBP7.26□□□□□ -1.25
PTCD3-216ENST00000487043 NUTM2EB1AL46 878 aaPredicted RBP7.26□□□□□ -1.25
PTCD3-216ENST00000487043 C6orf229H3BNL8 230 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 AP1G2O75843 785 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 PDIA4P13667 645 aaKnown RBP7.26□□□□□ -1.25
PTCD3-216ENST00000487043 HRCP23327 699 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 NUTM2DQ5VT03 806 aaPredicted RBP7.26□□□□□ -1.25
PTCD3-216ENST00000487043 NUTM2AQ8IVF1 878 aaPredicted RBP7.26□□□□□ -1.25
PTCD3-216ENST00000487043 MTMR14Q8NCE2 650 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 GDPD2Q9HCC8 539 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 PCDHGC3Q9UN70 934 aa7.26□□□□□ -1.25
PTCD3-216ENST00000487043 TERTO14746 1132 aaKnown RBP7.25□□□□□ -1.25
PTCD3-216ENST00000487043 LILRB3O75022 631 aa7.25□□□□□ -1.25
PTCD3-216ENST00000487043 FDX1P10109 184 aa7.25□□□□□ -1.25
PTCD3-216ENST00000487043 INSM1Q01101 510 aaPredicted RBP7.25□□□□□ -1.25
PTCD3-216ENST00000487043 RTL5Q5HYW3 569 aaPredicted RBP7.25□□□□□ -1.25
PTCD3-216ENST00000487043 CABLES1Q8TDN4 633 aa7.25□□□□□ -1.25
PTCD3-216ENST00000487043 WASF2Q9Y6W5 498 aa7.25□□□□□ -1.25
PTCD3-216ENST00000487043 ABL2P42684 1182 aa7.24□□□□□ -1.25
PTCD3-216ENST00000487043 WIPF1O43516 503 aa7.23□□□□□ -1.25
PTCD3-216ENST00000487043 GJA5P36382 358 aa7.23□□□□□ -1.25
PTCD3-216ENST00000487043 PTCRAQ6ISU1 281 aaPredicted RBP7.23□□□□□ -1.25
PTCD3-216ENST00000487043 WWC1Q8IX03 1113 aa7.23□□□□□ -1.25
PTCD3-216ENST00000487043 PRM3Q9NNZ6 103 aa7.23□□□□□ -1.25
PTCD3-216ENST00000487043 STK17AQ9UEE5 414 aa7.23□□□□□ -1.25
PTCD3-216ENST00000487043 TBC1D2BQ9UPU7 963 aa7.22□□□□□ -1.25
PTCD3-216ENST00000487043 CAPN5O15484 640 aaPredicted RBP7.21□□□□□ -1.26
PTCD3-216ENST00000487043 USP17L8P0C7I0 530 aa7.21□□□□□ -1.26
PTCD3-216ENST00000487043 CCNYL3P0C7X3 344 aa7.21□□□□□ -1.26
PTCD3-216ENST00000487043 ZBTB3Q9H5J0 574 aa7.21□□□□□ -1.26
PTCD3-216ENST00000487043 SIAH2O43255 324 aa7.2□□□□□ -1.26
PTCD3-216ENST00000487043 BMP1P13497 986 aa7.2□□□□□ -1.26
PTCD3-216ENST00000487043 SH3BP2P78314 561 aa7.2□□□□□ -1.26
PTCD3-216ENST00000487043 LINC01559Q495D7 138 aa7.2□□□□□ -1.26
PTCD3-216ENST00000487043 PRPF38BQ5VTL8 546 aaKnown RBP7.2□□□□□ -1.26
PTCD3-216ENST00000487043 SLC16A10Q8TF71 515 aa7.2□□□□□ -1.26
PTCD3-216ENST00000487043 CALR3Q96L12 384 aaKnown RBP7.19□□□□□ -1.26
PTCD3-216ENST00000487043 UNC93B1Q9H1C4 597 aa7.19□□□□□ -1.26
PTCD3-216ENST00000487043 ZBTB7CA1YPR0 619 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 POM121CA8CG34 1229 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 SOCS7O14512 581 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 PTPRNQ16849 979 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 BAP1Q92560 729 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 TSC1Q92574 1164 aa7.18□□□□□ -1.26
PTCD3-216ENST00000487043 LCE2CQ5TA81 110 aa7.17□□□□□ -1.26
PTCD3-216ENST00000487043 TRIM46Q7Z4K8 759 aa7.17□□□□□ -1.26
PTCD3-216ENST00000487043 PRR7Q8TB68 274 aa7.17□□□□□ -1.26
PTCD3-216ENST00000487043 EVA1BQ9NVM1 165 aa7.17□□□□□ -1.26
PTCD3-216ENST00000487043 NXF1Q9UBU9 619 aaKnown RBP7.17□□□□□ -1.26
PTCD3-216ENST00000487043 CTDSPL2Q05D32 466 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 KCNH2Q12809 1159 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 MTMR2Q13614 643 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 GLMNQ92990 594 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 TLL2Q9Y6L7 1015 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 NDUFB9Q9Y6M9 179 aa7.16□□□□□ -1.26
PTCD3-216ENST00000487043 GJD4Q96KN9 370 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-216ENST00000487043 VARSP26640 1264 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms