RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 CCDC61Q9Y6R9 512 aa18.35■□□□□ 0.53
CHMP3-208ENST00000486404 COL14A1Q05707 1796 aaKnown RBP18.35■□□□□ 0.53
CHMP3-208ENST00000486404 EVC2Q86UK5 1308 aa18.34■□□□□ 0.53
CHMP3-208ENST00000486404 FNBP4Q8N3X1 1017 aaPredicted RBP18.34■□□□□ 0.53
CHMP3-208ENST00000486404 CABLES1Q8TDN4 633 aa18.34■□□□□ 0.53
CHMP3-208ENST00000486404 ACEP12821 1306 aa18.33■□□□□ 0.53
CHMP3-208ENST00000486404 CARD11Q9BXL7 1154 aa18.33■□□□□ 0.52
CHMP3-208ENST00000486404 CABP2Q9NPB3 220 aa18.33■□□□□ 0.52
CHMP3-208ENST00000486404 SLIT2O94813 1529 aa18.33■□□□□ 0.52
CHMP3-208ENST00000486404 AKAP12Q02952 1782 aa18.32■□□□□ 0.52
CHMP3-208ENST00000486404 NRAPQ86VF7 1730 aa18.32■□□□□ 0.52
CHMP3-208ENST00000486404 BCL9LQ86UU0 1499 aa18.32■□□□□ 0.52
CHMP3-208ENST00000486404 PLEKHG3A1L390 1219 aa18.29■□□□□ 0.52
CHMP3-208ENST00000486404 PCGF6Q9BYE7 350 aa18.29■□□□□ 0.52
CHMP3-208ENST00000486404 NRKQ7Z2Y5 1582 aa18.29■□□□□ 0.52
CHMP3-208ENST00000486404 GLI3P10071 1580 aa18.28■□□□□ 0.52
CHMP3-208ENST00000486404 SBNO2Q9Y2G9 1366 aa18.28■□□□□ 0.52
CHMP3-208ENST00000486404 UNC5CLQ8IV45 518 aa18.27■□□□□ 0.52
CHMP3-208ENST00000486404 ATAD2Q6PL18 1390 aa18.27■□□□□ 0.51
CHMP3-208ENST00000486404 MON2Q7Z3U7 1717 aa18.26■□□□□ 0.51
CHMP3-208ENST00000486404 ADRA2BP18089 450 aa18.26■□□□□ 0.51
CHMP3-208ENST00000486404 PIK3C2AO00443 1686 aa18.25■□□□□ 0.51
CHMP3-208ENST00000486404 USP6P35125 1406 aa18.25■□□□□ 0.51
CHMP3-208ENST00000486404 NUTM2GQ5VZR2 741 aa18.25■□□□□ 0.51
CHMP3-208ENST00000486404 BRD4O60885 1362 aaPredicted RBP18.25■□□□□ 0.51
CHMP3-208ENST00000486404 CABP1Q9NZU7 370 aa18.24■□□□□ 0.51
CHMP3-208ENST00000486404 CCDC9Q9Y3X0 531 aaKnown RBP18.24■□□□□ 0.51
CHMP3-208ENST00000486404 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
CHMP3-208ENST00000486404 ABTB2Q8N961 1025 aa18.23■□□□□ 0.51
CHMP3-208ENST00000486404 GJD4Q96KN9 370 aaPredicted RBP18.23■□□□□ 0.51
CHMP3-208ENST00000486404 PRDM11Q9NQV5 511 aa18.23■□□□□ 0.51
CHMP3-208ENST00000486404 BRWD3Q6RI45 1802 aa18.23■□□□□ 0.51
CHMP3-208ENST00000486404 KIAA0232Q92628 1395 aa18.21■□□□□ 0.51
CHMP3-208ENST00000486404 FAM83GA6ND36 823 aa18.2■□□□□ 0.5
CHMP3-208ENST00000486404 VPS72Q15906 364 aa18.2■□□□□ 0.5
CHMP3-208ENST00000486404 BTG4Q9NY30 223 aa18.2■□□□□ 0.5
CHMP3-208ENST00000486404 USP19O94966 1318 aa18.19■□□□□ 0.5
CHMP3-208ENST00000486404 NLRP13Q86W25 1043 aa18.18■□□□□ 0.5
CHMP3-208ENST00000486404 SLIT3O75094 1523 aa18.18■□□□□ 0.5
CHMP3-208ENST00000486404 A0A0G2JS52 829 aa18.17■□□□□ 0.5
CHMP3-208ENST00000486404 MYT1Q01538 1121 aa18.17■□□□□ 0.5
CHMP3-208ENST00000486404 UPF1Q92900 1129 aaKnown RBP eCLIP18.17■□□□□ 0.5
CHMP3-208ENST00000486404 LMO7Q8WWI1 1683 aa18.17■□□□□ 0.5
CHMP3-208ENST00000486404 KTN1Q86UP2 1357 aaKnown RBP18.17■□□□□ 0.5
CHMP3-208ENST00000486404 USP47Q96K76 1375 aa18.17■□□□□ 0.5
CHMP3-208ENST00000486404 ZC3H6P61129 1189 aaKnown RBP18.16■□□□□ 0.5
CHMP3-208ENST00000486404 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
CHMP3-208ENST00000486404 CHRNA2Q15822 529 aa18.15■□□□□ 0.5
CHMP3-208ENST00000486404 TMC1Q8TDI8 760 aa18.15■□□□□ 0.5
CHMP3-208ENST00000486404 TIMELESSQ9UNS1 1208 aa18.15■□□□□ 0.5
CHMP3-208ENST00000486404 CPSF1Q10570 1443 aaKnown RBP18.15■□□□□ 0.5
CHMP3-208ENST00000486404 SSH2Q76I76 1423 aa18.15■□□□□ 0.5
CHMP3-208ENST00000486404 NLRP6P59044 892 aa18.14■□□□□ 0.49
CHMP3-208ENST00000486404 ZNF692Q9BU19 519 aaPredicted RBP18.14■□□□□ 0.49
CHMP3-208ENST00000486404 USP54Q70EL1 1684 aa18.14■□□□□ 0.49
CHMP3-208ENST00000486404 CPDO75976 1380 aa18.14■□□□□ 0.49
CHMP3-208ENST00000486404 ST20-MTHFSA0A0A6YYL1 179 aa18.13■□□□□ 0.49
CHMP3-208ENST00000486404 TTC21AQ8NDW8 1320 aa18.13■□□□□ 0.49
CHMP3-208ENST00000486404 THSD7AQ9UPZ6 1657 aa18.12■□□□□ 0.49
CHMP3-208ENST00000486404 ZBTB7CA1YPR0 619 aa18.12■□□□□ 0.49
CHMP3-208ENST00000486404 SLC24A1O60721 1099 aa18.12■□□□□ 0.49
CHMP3-208ENST00000486404 HDGFL2Q7Z4V5 671 aaPredicted RBP18.12■□□□□ 0.49
CHMP3-208ENST00000486404 STRN4Q9NRL3 753 aa18.12■□□□□ 0.49
CHMP3-208ENST00000486404 TTC21BQ7Z4L5 1316 aa18.12■□□□□ 0.49
CHMP3-208ENST00000486404 SEPT12Q8IYM1 358 aa18.11■□□□□ 0.49
CHMP3-208ENST00000486404 NINLQ9Y2I6 1382 aa18.11■□□□□ 0.49
CHMP3-208ENST00000486404 CD163L1Q9NR16 1453 aa18.11■□□□□ 0.49
CHMP3-208ENST00000486404 LTN1O94822 1766 aa18.1■□□□□ 0.49
CHMP3-208ENST00000486404 GCP02774 474 aa18.1■□□□□ 0.49
CHMP3-208ENST00000486404 CAMTA1Q9Y6Y1 1673 aa18.09■□□□□ 0.49
CHMP3-208ENST00000486404 SPATA31A5Q5VU36 1347 aa18.09■□□□□ 0.49
CHMP3-208ENST00000486404 SPATA31A7Q8IWB4 1347 aa18.09■□□□□ 0.49
CHMP3-208ENST00000486404 FAM98CQ17RN3 349 aaKnown RBP18.09■□□□□ 0.49
CHMP3-208ENST00000486404 TERF2IPQ9NYB0 399 aa18.09■□□□□ 0.49
CHMP3-208ENST00000486404 RGPD5Q99666 1765 aa18.09■□□□□ 0.49
CHMP3-208ENST00000486404 EP400Q96L91 3159 aa18.08■□□□□ 0.49
CHMP3-208ENST00000486404 EDC4Q6P2E9 1401 aaKnown RBP18.08■□□□□ 0.49
CHMP3-208ENST00000486404 A0A1W2PP64 1363 aa18.08■□□□□ 0.49
CHMP3-208ENST00000486404 WNK3Q9BYP7 1800 aa18.08■□□□□ 0.48
CHMP3-208ENST00000486404 EVA1CP58658 441 aa18.08■□□□□ 0.48
CHMP3-208ENST00000486404 TESK2Q96S53 571 aa18.08■□□□□ 0.48
CHMP3-208ENST00000486404 NFAT5O94916 1531 aa18.08■□□□□ 0.48
CHMP3-208ENST00000486404 COL5A2P05997 1499 aaPredicted RBP18.07■□□□□ 0.48
CHMP3-208ENST00000486404 TMF1P82094 1093 aa18.07■□□□□ 0.48
CHMP3-208ENST00000486404 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.07■□□□□ 0.48
CHMP3-208ENST00000486404 PUS7Q96PZ0 661 aaKnown RBP18.07■□□□□ 0.48
CHMP3-208ENST00000486404 COL18A1P39060 1754 aa18.07■□□□□ 0.48
CHMP3-208ENST00000486404 SOX12O15370 315 aa18.06■□□□□ 0.48
CHMP3-208ENST00000486404 KCNH5Q8NCM2 988 aa18.06■□□□□ 0.48
CHMP3-208ENST00000486404 ABCC6O95255 1503 aa18.06■□□□□ 0.48
CHMP3-208ENST00000486404 MYOM1P52179 1685 aa18.06■□□□□ 0.48
CHMP3-208ENST00000486404 KIF20BQ96Q89 1820 aa18.05■□□□□ 0.48
CHMP3-208ENST00000486404 SPATA31A1Q5TZJ5 1347 aa18.05■□□□□ 0.48
CHMP3-208ENST00000486404 KRT27Q7Z3Y8 459 aa18.05■□□□□ 0.48
CHMP3-208ENST00000486404 SLC12A5Q9H2X9 1139 aa18.05■□□□□ 0.48
CHMP3-208ENST00000486404 RGPD1P0DJD0 1748 aa18.05■□□□□ 0.48
CHMP3-208ENST00000486404 AATKQ6ZMQ8 1374 aa18.04■□□□□ 0.48
CHMP3-208ENST00000486404 USP35Q9P2H5 1018 aa18.04■□□□□ 0.48
CHMP3-208ENST00000486404 PARP4Q9UKK3 1724 aaKnown RBP18.03■□□□□ 0.48
CHMP3-208ENST00000486404 ONECUT3O60422 494 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms