RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 ATRNO75882 1429 aa25.07■■□□□ 1.6
COL6A1-204ENST00000486023 ABTB2Q8N961 1025 aa25.07■■□□□ 1.6
COL6A1-204ENST00000486023 QRICH2Q9H0J4 1663 aa25.06■■□□□ 1.6
COL6A1-204ENST00000486023 POLR3AO14802 1390 aaPredicted RBP25.05■■□□□ 1.6
COL6A1-204ENST00000486023 CDK12Q9NYV4 1490 aaPredicted RBP25.04■■□□□ 1.6
COL6A1-204ENST00000486023 UPF1Q92900 1129 aaKnown RBP eCLIP25.04■■□□□ 1.6
COL6A1-204ENST00000486023 BTG4Q9NY30 223 aa25.04■■□□□ 1.6
COL6A1-204ENST00000486023 ITSN1Q15811 1721 aa25.03■■□□□ 1.6
COL6A1-204ENST00000486023 ZC3H6P61129 1189 aaKnown RBP25.03■■□□□ 1.6
COL6A1-204ENST00000486023 TRPM3Q9HCF6 1732 aaPredicted RBP25.03■■□□□ 1.6
COL6A1-204ENST00000486023 SLIT2O94813 1529 aa25.02■■□□□ 1.6
COL6A1-204ENST00000486023 PRDM11Q9NQV5 511 aa25.02■■□□□ 1.6
COL6A1-204ENST00000486023 MARF1Q9Y4F3 1742 aaKnown RBP25■■□□□ 1.59
COL6A1-204ENST00000486023 CHRNA2Q15822 529 aa25■■□□□ 1.59
COL6A1-204ENST00000486023 A0A0G2JS52 829 aa24.98■■□□□ 1.59
COL6A1-204ENST00000486023 MYT1Q01538 1121 aa24.98■■□□□ 1.59
COL6A1-204ENST00000486023 VPS72Q15906 364 aa24.98■■□□□ 1.59
COL6A1-204ENST00000486023 ALS2Q96Q42 1657 aa24.97■■□□□ 1.59
COL6A1-204ENST00000486023 ZBTB7CA1YPR0 619 aa24.97■■□□□ 1.59
COL6A1-204ENST00000486023 NLRP13Q86W25 1043 aa24.96■■□□□ 1.59
COL6A1-204ENST00000486023 TMC1Q8TDI8 760 aa24.96■■□□□ 1.59
COL6A1-204ENST00000486023 TOPAZ1Q8N9V7 1692 aa24.96■■□□□ 1.59
COL6A1-204ENST00000486023 RALGAPBQ86X10 1494 aa24.96■■□□□ 1.59
COL6A1-204ENST00000486023 KIAA0232Q92628 1395 aa24.95■■□□□ 1.59
COL6A1-204ENST00000486023 NLRP6P59044 892 aa24.94■■□□□ 1.58
COL6A1-204ENST00000486023 STRN4Q9NRL3 753 aa24.94■■□□□ 1.58
COL6A1-204ENST00000486023 ABCA3Q99758 1704 aa24.93■■□□□ 1.58
COL6A1-204ENST00000486023 SEPT12Q8IYM1 358 aa24.92■■□□□ 1.58
COL6A1-204ENST00000486023 ST20-MTHFSA0A0A6YYL1 179 aa24.91■■□□□ 1.58
COL6A1-204ENST00000486023 CCER1Q8TC90 406 aaPredicted RBP24.91■■□□□ 1.58
COL6A1-204ENST00000486023 ATAD2Q6PL18 1390 aa24.91■■□□□ 1.58
COL6A1-204ENST00000486023 USP6P35125 1406 aa24.9■■□□□ 1.58
COL6A1-204ENST00000486023 EVA1CP58658 441 aa24.9■■□□□ 1.58
COL6A1-204ENST00000486023 FAM98CQ17RN3 349 aaKnown RBP24.9■■□□□ 1.58
COL6A1-204ENST00000486023 ZNF692Q9BU19 519 aaPredicted RBP24.9■■□□□ 1.58
COL6A1-204ENST00000486023 GCP02774 474 aa24.89■■□□□ 1.58
COL6A1-204ENST00000486023 PLCH1Q4KWH8 1693 aa24.88■■□□□ 1.57
COL6A1-204ENST00000486023 SOX12O15370 315 aa24.88■■□□□ 1.57
COL6A1-204ENST00000486023 GLI3P10071 1580 aa24.88■■□□□ 1.57
COL6A1-204ENST00000486023 USP35Q9P2H5 1018 aa24.87■■□□□ 1.57
COL6A1-204ENST00000486023 TTC21BQ7Z4L5 1316 aa24.86■■□□□ 1.57
COL6A1-204ENST00000486023 KTN1Q86UP2 1357 aaKnown RBP24.86■■□□□ 1.57
COL6A1-204ENST00000486023 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.86■■□□□ 1.57
COL6A1-204ENST00000486023 SLC12A5Q9H2X9 1139 aa24.86■■□□□ 1.57
COL6A1-204ENST00000486023 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.86■■□□□ 1.57
COL6A1-204ENST00000486023 BRD4O60885 1362 aaPredicted RBP24.85■■□□□ 1.57
COL6A1-204ENST00000486023 COL14A1Q05707 1796 aaKnown RBP24.85■■□□□ 1.57
COL6A1-204ENST00000486023 USP19O94966 1318 aa24.85■■□□□ 1.57
COL6A1-204ENST00000486023 SBNO2Q9Y2G9 1366 aa24.84■■□□□ 1.57
COL6A1-204ENST00000486023 NWD2Q9ULI1 1742 aa24.83■■□□□ 1.57
COL6A1-204ENST00000486023 HDGFL2Q7Z4V5 671 aaPredicted RBP24.82■■□□□ 1.56
COL6A1-204ENST00000486023 SPATA31A5Q5VU36 1347 aa24.82■■□□□ 1.56
COL6A1-204ENST00000486023 SPATA31A7Q8IWB4 1347 aa24.82■■□□□ 1.56
COL6A1-204ENST00000486023 ONECUT3O60422 494 aaPredicted RBP24.81■■□□□ 1.56
COL6A1-204ENST00000486023 KRT27Q7Z3Y8 459 aa24.81■■□□□ 1.56
COL6A1-204ENST00000486023 TESK2Q96S53 571 aa24.81■■□□□ 1.56
COL6A1-204ENST00000486023 PHRF1Q9P1Y6 1649 aaKnown RBP24.8■■□□□ 1.56
COL6A1-204ENST00000486023 ZRANB1Q9UGI0 708 aa24.8■■□□□ 1.56
COL6A1-204ENST00000486023 TIMELESSQ9UNS1 1208 aa24.8■■□□□ 1.56
COL6A1-204ENST00000486023 CRYBG1Q9Y4K1 1723 aa24.8■■□□□ 1.56
COL6A1-204ENST00000486023 CLSPNQ9HAW4 1339 aa24.8■■□□□ 1.56
COL6A1-204ENST00000486023 SSH2Q76I76 1423 aa24.79■■□□□ 1.56
COL6A1-204ENST00000486023 LARP1Q6PKG0 1096 aaKnown RBP24.79■■□□□ 1.56
COL6A1-204ENST00000486023 USP47Q96K76 1375 aa24.78■■□□□ 1.56
COL6A1-204ENST00000486023 CPSF1Q10570 1443 aaKnown RBP24.78■■□□□ 1.56
COL6A1-204ENST00000486023 FAM182BQ5T319 152 aa24.77■■□□□ 1.56
COL6A1-204ENST00000486023 TERF2IPQ9NYB0 399 aa24.77■■□□□ 1.56
COL6A1-204ENST00000486023 TTC21AQ8NDW8 1320 aa24.77■■□□□ 1.56
COL6A1-204ENST00000486023 NRAPQ86VF7 1730 aa24.76■■□□□ 1.55
COL6A1-204ENST00000486023 NME9Q86XW9 330 aa24.76■■□□□ 1.55
COL6A1-204ENST00000486023 SPATA31A1Q5TZJ5 1347 aa24.76■■□□□ 1.55
COL6A1-204ENST00000486023 CPDO75976 1380 aa24.76■■□□□ 1.55
COL6A1-204ENST00000486023 NRKQ7Z2Y5 1582 aa24.76■■□□□ 1.55
COL6A1-204ENST00000486023 TMF1P82094 1093 aa24.75■■□□□ 1.55
COL6A1-204ENST00000486023 KCNH5Q8NCM2 988 aa24.75■■□□□ 1.55
COL6A1-204ENST00000486023 SLC24A1O60721 1099 aa24.74■■□□□ 1.55
COL6A1-204ENST00000486023 CAMTA1Q9Y6Y1 1673 aa24.72■■□□□ 1.55
COL6A1-204ENST00000486023 SF3B2Q13435 895 aaKnown RBP24.72■■□□□ 1.55
COL6A1-204ENST00000486023 CCDC125Q86Z20 511 aa24.72■■□□□ 1.55
COL6A1-204ENST00000486023 PUS7Q96PZ0 661 aaKnown RBP24.72■■□□□ 1.55
COL6A1-204ENST00000486023 EP400Q96L91 3159 aa24.7■■□□□ 1.54
COL6A1-204ENST00000486023 PIK3C2AO00443 1686 aa24.7■■□□□ 1.54
COL6A1-204ENST00000486023 CD163L1Q9NR16 1453 aa24.7■■□□□ 1.54
COL6A1-204ENST00000486023 A0A1W2PP64 1363 aa24.69■■□□□ 1.54
COL6A1-204ENST00000486023 TOM1L2Q6ZVM7 507 aa24.69■■□□□ 1.54
COL6A1-204ENST00000486023 ARHGEF25Q86VW2 580 aa24.69■■□□□ 1.54
COL6A1-204ENST00000486023 TCP11L2Q8N4U5 519 aa24.69■■□□□ 1.54
COL6A1-204ENST00000486023 AXIN2Q9Y2T1 843 aa24.69■■□□□ 1.54
COL6A1-204ENST00000486023 CSB-PGBD3P0DP91 1061 aa24.68■■□□□ 1.54
COL6A1-204ENST00000486023 BRWD3Q6RI45 1802 aa24.68■■□□□ 1.54
COL6A1-204ENST00000486023 AATKQ6ZMQ8 1374 aa24.67■■□□□ 1.54
COL6A1-204ENST00000486023 AKAP12Q02952 1782 aa24.67■■□□□ 1.54
COL6A1-204ENST00000486023 SLIT3O75094 1523 aa24.67■■□□□ 1.54
COL6A1-204ENST00000486023 POLR3GLQ9BT43 218 aa24.67■■□□□ 1.54
COL6A1-204ENST00000486023 PDE3BQ13370 1112 aa24.66■■□□□ 1.54
COL6A1-204ENST00000486023 DEFB132Q7Z7B7 95 aa24.66■■□□□ 1.54
COL6A1-204ENST00000486023 COL5A2P05997 1499 aaPredicted RBP24.64■■□□□ 1.54
COL6A1-204ENST00000486023 BLMP54132 1417 aaPredicted RBP24.64■■□□□ 1.54
COL6A1-204ENST00000486023 EDC4Q6P2E9 1401 aaKnown RBP24.64■■□□□ 1.54
COL6A1-204ENST00000486023 BARGINQ6ZT62 677 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms