RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 MEX3CQ5U5Q3 659 aaKnown RBP12.81□□□□□ -0.36
CTSA-208ENST00000485627 ZNF692Q9BU19 519 aaPredicted RBP12.81□□□□□ -0.36
CTSA-208ENST00000485627 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.8□□□□□ -0.36
CTSA-208ENST00000485627 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
CTSA-208ENST00000485627 HNRNPUQ00839 825 aaKnown RBP eCLIP12.8□□□□□ -0.36
CTSA-208ENST00000485627 CHD2O14647 1828 aaKnown RBP12.8□□□□□ -0.36
CTSA-208ENST00000485627 SRCAPQ6ZRS2 3230 aa12.8□□□□□ -0.36
CTSA-208ENST00000485627 PNISRQ8TF01 805 aaKnown RBP12.79□□□□□ -0.36
CTSA-208ENST00000485627 COL16A1Q07092 1604 aaPredicted RBP12.79□□□□□ -0.36
CTSA-208ENST00000485627 USP32Q8NFA0 1604 aa12.79□□□□□ -0.36
CTSA-208ENST00000485627 PLEKHG3A1L390 1219 aa12.78□□□□□ -0.36
CTSA-208ENST00000485627 PRR36Q9H6K5 1346 aa12.78□□□□□ -0.36
CTSA-208ENST00000485627 MSH6P52701 1360 aa12.78□□□□□ -0.36
CTSA-208ENST00000485627 CD163L1Q9NR16 1453 aa12.78□□□□□ -0.36
CTSA-208ENST00000485627 NUTM2BA6NNL0 878 aaPredicted RBP12.77□□□□□ -0.37
CTSA-208ENST00000485627 NUTM2EB1AL46 878 aaPredicted RBP12.77□□□□□ -0.37
CTSA-208ENST00000485627 TNNT2P45379 298 aaPredicted RBP12.77□□□□□ -0.37
CTSA-208ENST00000485627 WDR43Q15061 677 aaKnown RBP eCLIP12.77□□□□□ -0.37
CTSA-208ENST00000485627 NUTM2AQ8IVF1 878 aaPredicted RBP12.77□□□□□ -0.37
CTSA-208ENST00000485627 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.77□□□□□ -0.37
CTSA-208ENST00000485627 GGNBP2Q9H3C7 697 aa12.77□□□□□ -0.37
CTSA-208ENST00000485627 EDC4Q6P2E9 1401 aaKnown RBP12.77□□□□□ -0.37
CTSA-208ENST00000485627 ATXN8OSP0DMR3 200 aa12.76□□□□□ -0.37
CTSA-208ENST00000485627 NGDNQ8NEJ9 315 aaKnown RBP12.76□□□□□ -0.37
CTSA-208ENST00000485627 CPSF1Q10570 1443 aaKnown RBP12.76□□□□□ -0.37
CTSA-208ENST00000485627 ANKARQ7Z5J8 1434 aa12.76□□□□□ -0.37
CTSA-208ENST00000485627 CDC42BPGQ6DT37 1551 aa12.76□□□□□ -0.37
CTSA-208ENST00000485627 FYB1O15117 783 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 ACEP12821 1306 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 RXRBP28702 533 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 NKTRP30414 1462 aaKnown RBP12.75□□□□□ -0.37
CTSA-208ENST00000485627 NWD1Q149M9 1564 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 ZNF772Q68DY9 489 aaPredicted RBP12.75□□□□□ -0.37
CTSA-208ENST00000485627 CFAP53Q96M91 514 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 ADGRL3Q9HAR2 1447 aa12.75□□□□□ -0.37
CTSA-208ENST00000485627 PMFBP1Q8TBY8 1022 aa12.74□□□□□ -0.37
CTSA-208ENST00000485627 SPATA31A6Q5VVP1 1343 aa12.73□□□□□ -0.37
CTSA-208ENST00000485627 COG3Q96JB2 828 aa12.73□□□□□ -0.37
CTSA-208ENST00000485627 C19orf44Q9H6X5 657 aa12.72□□□□□ -0.37
CTSA-208ENST00000485627 ITSN1Q15811 1721 aa12.71□□□□□ -0.37
CTSA-208ENST00000485627 POLR3AO14802 1390 aaPredicted RBP12.71□□□□□ -0.37
CTSA-208ENST00000485627 AFF2P51816 1311 aa12.71□□□□□ -0.37
CTSA-208ENST00000485627 TTC21BQ7Z4L5 1316 aa12.71□□□□□ -0.37
CTSA-208ENST00000485627 DCAF8L1A6NGE4 600 aa12.71□□□□□ -0.37
CTSA-208ENST00000485627 MTHFSP49914 203 aa12.71□□□□□ -0.37
CTSA-208ENST00000485627 TOPAZ1Q8N9V7 1692 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 ATF3P18847 181 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 NME9Q86XW9 330 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 PHF8Q9UPP1 1060 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 RGS12O14924 1447 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 USP6P35125 1406 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 NCOA3Q9Y6Q9 1424 aa12.7□□□□□ -0.38
CTSA-208ENST00000485627 INSRP06213 1382 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 ZBED9Q6R2W3 1325 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 TTC21AQ8NDW8 1320 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 NALCNQ8IZF0 1738 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 FMN2Q9NZ56 1722 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 ESCO1Q5FWF5 840 aa12.69□□□□□ -0.38
CTSA-208ENST00000485627 KIF20BQ96Q89 1820 aa12.68□□□□□ -0.38
CTSA-208ENST00000485627 ADAMTS8Q9UP79 889 aa12.68□□□□□ -0.38
CTSA-208ENST00000485627 AKAP12Q02952 1782 aa12.68□□□□□ -0.38
CTSA-208ENST00000485627 MON2Q7Z3U7 1717 aa12.68□□□□□ -0.38
CTSA-208ENST00000485627 BRINP3Q76B58 766 aa12.67□□□□□ -0.38
CTSA-208ENST00000485627 DDX17Q92841 729 aaKnown RBP12.67□□□□□ -0.38
CTSA-208ENST00000485627 NUDCQ9Y266 331 aa12.67□□□□□ -0.38
CTSA-208ENST00000485627 SHPRHQ149N8 1683 aa12.67□□□□□ -0.38
CTSA-208ENST00000485627 AHDC1Q5TGY3 1603 aaPredicted RBP12.66□□□□□ -0.38
CTSA-208ENST00000485627 ANKRD26Q9UPS8 1709 aa12.66□□□□□ -0.38
CTSA-208ENST00000485627 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
CTSA-208ENST00000485627 PSME1Q06323 249 aa12.66□□□□□ -0.38
CTSA-208ENST00000485627 CADPS2Q86UW7 1296 aa12.66□□□□□ -0.38
CTSA-208ENST00000485627 C8orf37Q96NL8 207 aa12.66□□□□□ -0.38
CTSA-208ENST00000485627 CDK12Q9NYV4 1490 aaPredicted RBP12.65□□□□□ -0.38
CTSA-208ENST00000485627 PPM1GO15355 546 aaPredicted RBP12.65□□□□□ -0.38
CTSA-208ENST00000485627 FKBP8Q14318 412 aa12.65□□□□□ -0.38
CTSA-208ENST00000485627 QTRT2Q9H974 415 aaKnown RBP12.65□□□□□ -0.38
CTSA-208ENST00000485627 ZRANB1Q9UGI0 708 aa12.65□□□□□ -0.38
CTSA-208ENST00000485627 DCCP43146 1447 aa12.64□□□□□ -0.39
CTSA-208ENST00000485627 AATKQ6ZMQ8 1374 aa12.64□□□□□ -0.39
CTSA-208ENST00000485627 BLMP54132 1417 aaPredicted RBP12.63□□□□□ -0.39
CTSA-208ENST00000485627 SSH2Q76I76 1423 aa12.63□□□□□ -0.39
CTSA-208ENST00000485627 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
CTSA-208ENST00000485627 RGPD8O14715 1765 aaPredicted RBP12.63□□□□□ -0.39
CTSA-208ENST00000485627 NRKQ7Z2Y5 1582 aa12.62□□□□□ -0.39
CTSA-208ENST00000485627 C1orf167Q5SNV9 1468 aa12.62□□□□□ -0.39
CTSA-208ENST00000485627 DIAPH1O60610 1272 aaKnown RBP12.62□□□□□ -0.39
CTSA-208ENST00000485627 U2AF1L5P0DN76 240 aaPredicted RBP12.62□□□□□ -0.39
CTSA-208ENST00000485627 NLRP6P59044 892 aa12.62□□□□□ -0.39
CTSA-208ENST00000485627 U2AF1Q01081 240 aaKnown RBP eCLIP12.62□□□□□ -0.39
CTSA-208ENST00000485627 ABTB2Q8N961 1025 aa12.62□□□□□ -0.39
CTSA-208ENST00000485627 ORAI2Q96SN7 254 aa12.62□□□□□ -0.39
CTSA-208ENST00000485627 USP31Q70CQ4 1352 aa12.61□□□□□ -0.39
CTSA-208ENST00000485627 U2SURPO15042 1029 aaKnown RBP12.61□□□□□ -0.39
CTSA-208ENST00000485627 RBM6P78332 1123 aaKnown RBP12.61□□□□□ -0.39
CTSA-208ENST00000485627 PNNQ9H307 717 aaKnown RBP12.61□□□□□ -0.39
CTSA-208ENST00000485627 SALL2Q9Y467 1007 aaPredicted RBP12.61□□□□□ -0.39
CTSA-208ENST00000485627 OVOS2A0A0J9YW53 1432 aa12.61□□□□□ -0.39
CTSA-208ENST00000485627 OVOS2Q6IE36 1432 aa12.61□□□□□ -0.39
CTSA-208ENST00000485627 SENP3-EIF4A1A0A087X0R7 540 aa12.6□□□□□ -0.39
CTSA-208ENST00000485627 FOXO3O43524 673 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms