RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 NPHP3Q7Z494 1330 aa24.2■■□□□ 1.46
SMARCD3-212ENST00000485610 TTC21AQ8NDW8 1320 aa24.2■■□□□ 1.46
SMARCD3-212ENST00000485610 FOXO3O43524 673 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 PXDNQ92626 1479 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 ALS2Q96Q42 1657 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 TTC21BQ7Z4L5 1316 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 TOM1O60784 492 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 PSME1Q06323 249 aa24.19■■□□□ 1.46
SMARCD3-212ENST00000485610 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.18■■□□□ 1.46
SMARCD3-212ENST00000485610 AHDC1Q5TGY3 1603 aaPredicted RBP24.17■■□□□ 1.46
SMARCD3-212ENST00000485610 MARF1Q9Y4F3 1742 aaKnown RBP24.17■■□□□ 1.46
SMARCD3-212ENST00000485610 CC2D1BQ5T0F9 858 aaKnown RBP24.17■■□□□ 1.46
SMARCD3-212ENST00000485610 PARD3Q8TEW0 1356 aa24.17■■□□□ 1.46
SMARCD3-212ENST00000485610 PRKRIP1Q9H875 184 aaPredicted RBP24.15■■□□□ 1.46
SMARCD3-212ENST00000485610 FYB1O15117 783 aa24.14■■□□□ 1.46
SMARCD3-212ENST00000485610 UBAP1LF5GYI3 381 aa24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 CNGB1Q14028 1251 aaPredicted RBP24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 KRT28Q7Z3Y7 464 aa24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 SBNO1A3KN83 1393 aa24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 XPCQ01831 940 aaPredicted RBP24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 RALBP1Q15311 655 aa24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 NME9Q86XW9 330 aa24.13■■□□□ 1.45
SMARCD3-212ENST00000485610 OVOS2A0A0J9YW53 1432 aa24.12■■□□□ 1.45
SMARCD3-212ENST00000485610 OVOS2Q6IE36 1432 aa24.12■■□□□ 1.45
SMARCD3-212ENST00000485610 PHLPP1O60346 1717 aa24.12■■□□□ 1.45
SMARCD3-212ENST00000485610 PAK3O75914 559 aaPredicted RBP24.11■■□□□ 1.45
SMARCD3-212ENST00000485610 DDX17Q92841 729 aaKnown RBP24.11■■□□□ 1.45
SMARCD3-212ENST00000485610 GGNBP2Q9H3C7 697 aa24.11■■□□□ 1.45
SMARCD3-212ENST00000485610 USP31Q70CQ4 1352 aa24.1■■□□□ 1.45
SMARCD3-212ENST00000485610 TNS3Q68CZ2 1445 aa24.1■■□□□ 1.45
SMARCD3-212ENST00000485610 SOS2Q07890 1332 aaPredicted RBP24.09■■□□□ 1.45
SMARCD3-212ENST00000485610 MORC1Q86VD1 984 aa24.08■■□□□ 1.45
SMARCD3-212ENST00000485610 MIER1Q8N108 512 aa24.08■■□□□ 1.45
SMARCD3-212ENST00000485610 MAP2P11137 1827 aaKnown RBP24.08■■□□□ 1.44
SMARCD3-212ENST00000485610 CRYBG1Q9Y4K1 1723 aa24.07■■□□□ 1.44
SMARCD3-212ENST00000485610 COG3Q96JB2 828 aa24.07■■□□□ 1.44
SMARCD3-212ENST00000485610 COL16A1Q07092 1604 aaPredicted RBP24.06■■□□□ 1.44
SMARCD3-212ENST00000485610 MED1Q15648 1581 aaPredicted RBP24.06■■□□□ 1.44
SMARCD3-212ENST00000485610 PIP4K2BP78356 416 aa24.06■■□□□ 1.44
SMARCD3-212ENST00000485610 ABTB2Q8N961 1025 aa24.06■■□□□ 1.44
SMARCD3-212ENST00000485610 MYBBP1AQ9BQG0 1328 aaKnown RBP24.06■■□□□ 1.44
SMARCD3-212ENST00000485610 ZRANB1Q9UGI0 708 aa24.05■■□□□ 1.44
SMARCD3-212ENST00000485610 ARHGEF10O15013 1369 aa24.05■■□□□ 1.44
SMARCD3-212ENST00000485610 PHRF1Q9P1Y6 1649 aaKnown RBP24.04■■□□□ 1.44
SMARCD3-212ENST00000485610 SPATA31A3Q5VYP0 1347 aa24.04■■□□□ 1.44
SMARCD3-212ENST00000485610 SCAF1Q9H7N4 1312 aaKnown RBP24.04■■□□□ 1.44
SMARCD3-212ENST00000485610 NLRP6P59044 892 aa24.03■■□□□ 1.44
SMARCD3-212ENST00000485610 SLIT3O75094 1523 aa24.03■■□□□ 1.44
SMARCD3-212ENST00000485610 ABCA3Q99758 1704 aa24.03■■□□□ 1.44
SMARCD3-212ENST00000485610 LTN1O94822 1766 aa24■■□□□ 1.43
SMARCD3-212ENST00000485610 NUTM2GQ5VZR2 741 aa24■■□□□ 1.43
SMARCD3-212ENST00000485610 LMOD2Q6P5Q4 547 aa24■■□□□ 1.43
SMARCD3-212ENST00000485610 NLRP13Q86W25 1043 aa24■■□□□ 1.43
SMARCD3-212ENST00000485610 AATKQ6ZMQ8 1374 aa23.99■■□□□ 1.43
SMARCD3-212ENST00000485610 COL22A1Q8NFW1 1626 aaPredicted RBP23.99■■□□□ 1.43
SMARCD3-212ENST00000485610 PPP2R1AP30153 589 aa23.99■■□□□ 1.43
SMARCD3-212ENST00000485610 USP19O94966 1318 aa23.98■■□□□ 1.43
SMARCD3-212ENST00000485610 NFAT5O94916 1531 aa23.98■■□□□ 1.43
SMARCD3-212ENST00000485610 CCER2I3L3R5 266 aa23.98■■□□□ 1.43
SMARCD3-212ENST00000485610 TNNT2P45379 298 aaPredicted RBP23.98■■□□□ 1.43
SMARCD3-212ENST00000485610 SMG6Q86US8 1419 aaKnown RBP23.96■■□□□ 1.43
SMARCD3-212ENST00000485610 LRRC59Q96AG4 307 aaKnown RBP23.94■■□□□ 1.42
SMARCD3-212ENST00000485610 SHPRHQ149N8 1683 aa23.94■■□□□ 1.42
SMARCD3-212ENST00000485610 PEAK1Q9H792 1746 aa23.92■■□□□ 1.42
SMARCD3-212ENST00000485610 KCNH5Q8NCM2 988 aa23.92■■□□□ 1.42
SMARCD3-212ENST00000485610 CDK12Q9NYV4 1490 aaPredicted RBP23.92■■□□□ 1.42
SMARCD3-212ENST00000485610 PNPLA6Q8IY17 1366 aa23.9■■□□□ 1.42
SMARCD3-212ENST00000485610 SOX12O15370 315 aa23.89■■□□□ 1.42
SMARCD3-212ENST00000485610 MRS2Q9HD23 443 aa23.88■■□□□ 1.41
SMARCD3-212ENST00000485610 GCP02774 474 aa23.87■■□□□ 1.41
SMARCD3-212ENST00000485610 FBLN1P23142 703 aa23.87■■□□□ 1.41
SMARCD3-212ENST00000485610 MTHFSP49914 203 aa23.87■■□□□ 1.41
SMARCD3-212ENST00000485610 POLKQ9UBT6 870 aa23.87■■□□□ 1.41
SMARCD3-212ENST00000485610 RRS1Q15050 365 aaKnown RBP23.87■■□□□ 1.41
SMARCD3-212ENST00000485610 COL3A1P02461 1466 aaPredicted RBP23.86■■□□□ 1.41
SMARCD3-212ENST00000485610 EMILIN1Q9Y6C2 1016 aa23.86■■□□□ 1.41
SMARCD3-212ENST00000485610 MAP3K19Q56UN5 1328 aa23.86■■□□□ 1.41
SMARCD3-212ENST00000485610 RTL1A6NKG5 1358 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 KIF24Q5T7B8 1368 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 ABCC6O95255 1503 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 PLEKHG5O94827 1062 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 CCDC184Q52MB2 194 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 CFAP53Q96M91 514 aa23.85■■□□□ 1.41
SMARCD3-212ENST00000485610 CABLES1Q8TDN4 633 aa23.83■■□□□ 1.41
SMARCD3-212ENST00000485610 RGPD5Q99666 1765 aa23.83■■□□□ 1.41
SMARCD3-212ENST00000485610 INSRP06213 1382 aa23.83■■□□□ 1.41
SMARCD3-212ENST00000485610 FLT4P35916 1363 aa23.83■■□□□ 1.41
SMARCD3-212ENST00000485610 COL18A1P39060 1754 aa23.82■■□□□ 1.4
SMARCD3-212ENST00000485610 PPM1GO15355 546 aaPredicted RBP23.81■■□□□ 1.4
SMARCD3-212ENST00000485610 CPDO75976 1380 aa23.81■■□□□ 1.4
SMARCD3-212ENST00000485610 JCADQ9P266 1359 aa23.81■■□□□ 1.4
SMARCD3-212ENST00000485610 HAP1P54257 671 aaPredicted RBP23.81■■□□□ 1.4
SMARCD3-212ENST00000485610 AMPHP49418 695 aa23.8■■□□□ 1.4
SMARCD3-212ENST00000485610 ARHGEF25Q86VW2 580 aa23.8■■□□□ 1.4
SMARCD3-212ENST00000485610 HSPA1LP34931 641 aa23.78■■□□□ 1.4
SMARCD3-212ENST00000485610 LMO7Q8WWI1 1683 aa23.78■■□□□ 1.4
SMARCD3-212ENST00000485610 KIAA0232Q92628 1395 aa23.77■■□□□ 1.4
SMARCD3-212ENST00000485610 ZC3H6P61129 1189 aaKnown RBP23.76■■□□□ 1.39
SMARCD3-212ENST00000485610 COL14A1Q05707 1796 aaKnown RBP23.76■■□□□ 1.39
SMARCD3-212ENST00000485610 BLMP54132 1417 aaPredicted RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms