RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RGPD1P0DJD0 1748 aa20.4■□□□□ 0.86
SQSTM1-208ENST00000485412 TULP4Q9NRJ4 1543 aa20.4■□□□□ 0.86
SQSTM1-208ENST00000485412 BTG4Q9NY30 223 aa20.4■□□□□ 0.86
SQSTM1-208ENST00000485412 ACIN1Q9UKV3 1341 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-208ENST00000485412 DCAF11Q8TEB1 546 aa20.39■□□□□ 0.85
SQSTM1-208ENST00000485412 GPRASP1Q5JY77 1395 aa20.38■□□□□ 0.85
SQSTM1-208ENST00000485412 EIF3AQ14152 1382 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-208ENST00000485412 ITSN1Q15811 1721 aa20.35■□□□□ 0.85
SQSTM1-208ENST00000485412 HRCP23327 699 aa20.34■□□□□ 0.85
SQSTM1-208ENST00000485412 ATP7BP35670 1465 aa20.33■□□□□ 0.85
SQSTM1-208ENST00000485412 EN1Q05925 392 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-208ENST00000485412 WASLO00401 505 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-208ENST00000485412 FAM182BQ5T319 152 aa20.32■□□□□ 0.84
SQSTM1-208ENST00000485412 SPATA31A5Q5VU36 1347 aa20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 SPATA31A7Q8IWB4 1347 aa20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 PAK3O75914 559 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 NGDNQ8NEJ9 315 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 TOPAZ1Q8N9V7 1692 aa20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 PHRF1Q9P1Y6 1649 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-208ENST00000485412 TNS1Q9HBL0 1735 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-208ENST00000485412 THSD7AQ9UPZ6 1657 aa20.3■□□□□ 0.84
SQSTM1-208ENST00000485412 PRDM11Q9NQV5 511 aa20.3■□□□□ 0.84
SQSTM1-208ENST00000485412 R3HDM1Q15032 1099 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-208ENST00000485412 KIAA1210Q9ULL0 1709 aa20.26■□□□□ 0.83
SQSTM1-208ENST00000485412 DISP2A7MBM2 1401 aa20.26■□□□□ 0.83
SQSTM1-208ENST00000485412 NUDT16Q96DE0 195 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-208ENST00000485412 KIAA0232Q92628 1395 aa20.23■□□□□ 0.83
SQSTM1-208ENST00000485412 EZH2Q15910 746 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-208ENST00000485412 STRN4Q9NRL3 753 aa20.23■□□□□ 0.83
SQSTM1-208ENST00000485412 SPATA31A1Q5TZJ5 1347 aa20.23■□□□□ 0.83
SQSTM1-208ENST00000485412 CHRNA2Q15822 529 aa20.22■□□□□ 0.83
SQSTM1-208ENST00000485412 TRIM37O94972 964 aa20.21■□□□□ 0.83
SQSTM1-208ENST00000485412 NUTM2GQ5VZR2 741 aa20.21■□□□□ 0.83
SQSTM1-208ENST00000485412 FAM196AQ6ZSG2 479 aa20.21■□□□□ 0.83
SQSTM1-208ENST00000485412 CDK19Q9BWU1 502 aa20.21■□□□□ 0.83
SQSTM1-208ENST00000485412 NBPF1Q3BBV0 1214 aa20.2■□□□□ 0.82
SQSTM1-208ENST00000485412 STAC3Q96MF2 364 aa20.2■□□□□ 0.82
SQSTM1-208ENST00000485412 NRKQ7Z2Y5 1582 aa20.2■□□□□ 0.82
SQSTM1-208ENST00000485412 ZC3H6P61129 1189 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-208ENST00000485412 APBA3O96018 575 aa20.18■□□□□ 0.82
SQSTM1-208ENST00000485412 CAMKK2Q96RR4 588 aa20.18■□□□□ 0.82
SQSTM1-208ENST00000485412 USP35Q9P2H5 1018 aa20.18■□□□□ 0.82
SQSTM1-208ENST00000485412 POLR3AO14802 1390 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-208ENST00000485412 QRICH2Q9H0J4 1663 aa20.17■□□□□ 0.82
SQSTM1-208ENST00000485412 EVA1CP58658 441 aa20.17■□□□□ 0.82
SQSTM1-208ENST00000485412 ACEP12821 1306 aa20.17■□□□□ 0.82
SQSTM1-208ENST00000485412 PARD3Q8TEW0 1356 aa20.17■□□□□ 0.82
SQSTM1-208ENST00000485412 PDE3BQ13370 1112 aa20.16■□□□□ 0.82
SQSTM1-208ENST00000485412 RREB1Q92766 1687 aa20.16■□□□□ 0.82
SQSTM1-208ENST00000485412 LMO7Q8WWI1 1683 aa20.15■□□□□ 0.82
SQSTM1-208ENST00000485412 NUP188Q5SRE5 1749 aa20.14■□□□□ 0.81
SQSTM1-208ENST00000485412 SSH2Q76I76 1423 aa20.14■□□□□ 0.81
SQSTM1-208ENST00000485412 NBPF8Q3BBV2 869 aa20.14■□□□□ 0.81
SQSTM1-208ENST00000485412 CAMTA1Q9Y6Y1 1673 aa20.13■□□□□ 0.81
SQSTM1-208ENST00000485412 BARGINQ6ZT62 677 aa20.13■□□□□ 0.81
SQSTM1-208ENST00000485412 NBPF14Q5TI25 921 aa20.11■□□□□ 0.81
SQSTM1-208ENST00000485412 CCDC61Q9Y6R9 512 aa20.11■□□□□ 0.81
SQSTM1-208ENST00000485412 PLEKHG3A1L390 1219 aa20.1■□□□□ 0.81
SQSTM1-208ENST00000485412 ABTB2Q8N961 1025 aa20.1■□□□□ 0.81
SQSTM1-208ENST00000485412 PPIP5K1Q6PFW1 1433 aa20.1■□□□□ 0.81
SQSTM1-208ENST00000485412 LARP1Q6PKG0 1096 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-208ENST00000485412 TCP11L2Q8N4U5 519 aa20.09■□□□□ 0.81
SQSTM1-208ENST00000485412 CABP2Q9NPB3 220 aa20.09■□□□□ 0.81
SQSTM1-208ENST00000485412 TRPM1Q7Z4N2 1603 aa20.08■□□□□ 0.8
SQSTM1-208ENST00000485412 USP19O94966 1318 aa20.07■□□□□ 0.8
SQSTM1-208ENST00000485412 CENPJQ9HC77 1338 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-208ENST00000485412 SRPK2P78362 688 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-208ENST00000485412 PARP4Q9UKK3 1724 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-208ENST00000485412 PIK3C2AO00443 1686 aa20.06■□□□□ 0.8
SQSTM1-208ENST00000485412 CPDO75976 1380 aa20.06■□□□□ 0.8
SQSTM1-208ENST00000485412 PPP1R1BQ9UD71 204 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-208ENST00000485412 THRAP3Q9Y2W1 955 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-208ENST00000485412 YY1P25490 414 aa20.03■□□□□ 0.8
SQSTM1-208ENST00000485412 NLRP13Q86W25 1043 aa20.03■□□□□ 0.8
SQSTM1-208ENST00000485412 L3MBTL2Q969R5 705 aa20.03■□□□□ 0.8
SQSTM1-208ENST00000485412 ZBTB7CA1YPR0 619 aa20.02■□□□□ 0.8
SQSTM1-208ENST00000485412 SPON1Q9HCB6 807 aa20.02■□□□□ 0.8
SQSTM1-208ENST00000485412 COL5A2P05997 1499 aaPredicted RBP20.02■□□□□ 0.8
SQSTM1-208ENST00000485412 COL18A1P39060 1754 aa20.02■□□□□ 0.8
SQSTM1-208ENST00000485412 USP6P35125 1406 aa20.02■□□□□ 0.79
SQSTM1-208ENST00000485412 RGPD5Q99666 1765 aa20.01■□□□□ 0.79
SQSTM1-208ENST00000485412 C11orf95C9JLR9 678 aaPredicted RBP20.01■□□□□ 0.79
SQSTM1-208ENST00000485412 GCP02774 474 aa20.01■□□□□ 0.79
SQSTM1-208ENST00000485412 SIN3AQ96ST3 1273 aa20.01■□□□□ 0.79
SQSTM1-208ENST00000485412 SLIT3O75094 1523 aa20.01■□□□□ 0.79
SQSTM1-208ENST00000485412 AKAP12Q02952 1782 aa20■□□□□ 0.79
SQSTM1-208ENST00000485412 DCAF8L1A6NGE4 600 aa20■□□□□ 0.79
SQSTM1-208ENST00000485412 CABP1Q9NZU7 370 aa20■□□□□ 0.79
SQSTM1-208ENST00000485412 CRB1P82279 1406 aa20■□□□□ 0.79
SQSTM1-208ENST00000485412 SBF2Q86WG5 1849 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 WNK3Q9BYP7 1800 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 RGPD3A6NKT7 1758 aaPredicted RBP19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 RGPD4Q7Z3J3 1758 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 KCNQ2O43526 872 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 OVOS2A0A0G2JMS6 1433 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 OVOS2A0A0J9YW53 1432 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 OVOS2Q6IE36 1432 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 PEAK1Q9H792 1746 aa19.99■□□□□ 0.79
SQSTM1-208ENST00000485412 LRRC37A3O60309 1634 aa19.98■□□□□ 0.79
SQSTM1-208ENST00000485412 BRD4O60885 1362 aaPredicted RBP19.95■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms