RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 NBPF1Q3BBV0 1214 aa27.95■■■□□ 2.06
COL27A1-205ENST00000485397 KRT27Q7Z3Y8 459 aa27.94■■■□□ 2.06
COL27A1-205ENST00000485397 EP400Q96L91 3159 aa27.94■■■□□ 2.06
COL27A1-205ENST00000485397 NRAPQ86VF7 1730 aa27.92■■■□□ 2.06
COL27A1-205ENST00000485397 A0A0G2JS52 829 aa27.92■■■□□ 2.06
COL27A1-205ENST00000485397 MYT1Q01538 1121 aa27.92■■■□□ 2.06
COL27A1-205ENST00000485397 FAM98CQ17RN3 349 aaKnown RBP27.92■■■□□ 2.06
COL27A1-205ENST00000485397 DEFB132Q7Z7B7 95 aa27.92■■■□□ 2.06
COL27A1-205ENST00000485397 COL14A1Q05707 1796 aaKnown RBP27.91■■■□□ 2.06
COL27A1-205ENST00000485397 ITSN1Q15811 1721 aa27.89■■■□□ 2.06
COL27A1-205ENST00000485397 PRDM11Q9NQV5 511 aa27.89■■■□□ 2.06
COL27A1-205ENST00000485397 KIAA1210Q9ULL0 1709 aa27.89■■■□□ 2.05
COL27A1-205ENST00000485397 CRYBG1Q9Y4K1 1723 aa27.89■■■□□ 2.05
COL27A1-205ENST00000485397 NUTM2GQ5VZR2 741 aa27.88■■■□□ 2.05
COL27A1-205ENST00000485397 CCDC61Q9Y6R9 512 aa27.88■■■□□ 2.05
COL27A1-205ENST00000485397 ACEP12821 1306 aa27.88■■■□□ 2.05
COL27A1-205ENST00000485397 SF3B2Q13435 895 aaKnown RBP27.87■■■□□ 2.05
COL27A1-205ENST00000485397 NBPF8Q3BBV2 869 aa27.87■■■□□ 2.05
COL27A1-205ENST00000485397 SPATA31A5Q5VU36 1347 aa27.86■■■□□ 2.05
COL27A1-205ENST00000485397 SPATA31A7Q8IWB4 1347 aa27.86■■■□□ 2.05
COL27A1-205ENST00000485397 POLR3AO14802 1390 aaPredicted RBP27.86■■■□□ 2.05
COL27A1-205ENST00000485397 PLEKHG3A1L390 1219 aa27.85■■■□□ 2.05
COL27A1-205ENST00000485397 CHRNA2Q15822 529 aa27.85■■■□□ 2.05
COL27A1-205ENST00000485397 KIAA0232Q92628 1395 aa27.85■■■□□ 2.05
COL27A1-205ENST00000485397 TOPAZ1Q8N9V7 1692 aa27.83■■■□□ 2.05
COL27A1-205ENST00000485397 ZC3H6P61129 1189 aaKnown RBP27.82■■■□□ 2.04
COL27A1-205ENST00000485397 CENPJQ9HC77 1338 aaPredicted RBP27.81■■■□□ 2.04
COL27A1-205ENST00000485397 SRPK2P78362 688 aaKnown RBP27.8■■■□□ 2.04
COL27A1-205ENST00000485397 FAM182BQ5T319 152 aa27.79■■■□□ 2.04
COL27A1-205ENST00000485397 L3MBTL2Q969R5 705 aa27.79■■■□□ 2.04
COL27A1-205ENST00000485397 CABP2Q9NPB3 220 aa27.79■■■□□ 2.04
COL27A1-205ENST00000485397 STRN4Q9NRL3 753 aa27.79■■■□□ 2.04
COL27A1-205ENST00000485397 PHRF1Q9P1Y6 1649 aaKnown RBP27.78■■■□□ 2.04
COL27A1-205ENST00000485397 ABTB2Q8N961 1025 aa27.77■■■□□ 2.04
COL27A1-205ENST00000485397 SPATA31A1Q5TZJ5 1347 aa27.76■■■□□ 2.03
COL27A1-205ENST00000485397 SIN3AQ96ST3 1273 aa27.76■■■□□ 2.03
COL27A1-205ENST00000485397 PPIP5K1Q6PFW1 1433 aa27.75■■■□□ 2.03
COL27A1-205ENST00000485397 BAG6P46379 1132 aa27.73■■■□□ 2.03
COL27A1-205ENST00000485397 THSD7AQ9UPZ6 1657 aa27.72■■■□□ 2.03
COL27A1-205ENST00000485397 USP19O94966 1318 aa27.7■■■□□ 2.03
COL27A1-205ENST00000485397 EVA1CP58658 441 aa27.7■■■□□ 2.02
COL27A1-205ENST00000485397 CABP1Q9NZU7 370 aa27.7■■■□□ 2.02
COL27A1-205ENST00000485397 USP35Q9P2H5 1018 aa27.7■■■□□ 2.02
COL27A1-205ENST00000485397 NRKQ7Z2Y5 1582 aa27.69■■■□□ 2.02
COL27A1-205ENST00000485397 NEUROD1Q13562 356 aa27.69■■■□□ 2.02
COL27A1-205ENST00000485397 NLRP13Q86W25 1043 aa27.69■■■□□ 2.02
COL27A1-205ENST00000485397 QRICH2Q9H0J4 1663 aa27.68■■■□□ 2.02
COL27A1-205ENST00000485397 EN1Q05925 392 aaPredicted RBP27.68■■■□□ 2.02
COL27A1-205ENST00000485397 SRCAPQ6ZRS2 3230 aa27.68■■■□□ 2.02
COL27A1-205ENST00000485397 SSH2Q76I76 1423 aa27.67■■■□□ 2.02
COL27A1-205ENST00000485397 GCP02774 474 aa27.67■■■□□ 2.02
COL27A1-205ENST00000485397 CPDO75976 1380 aa27.67■■■□□ 2.02
COL27A1-205ENST00000485397 CAMTA1Q9Y6Y1 1673 aa27.67■■■□□ 2.02
COL27A1-205ENST00000485397 LARP1Q6PKG0 1096 aaKnown RBP27.66■■■□□ 2.02
COL27A1-205ENST00000485397 PSDA5PKW4 1024 aaPredicted RBP27.64■■■□□ 2.02
COL27A1-205ENST00000485397 BARGINQ6ZT62 677 aa27.63■■■□□ 2.01
COL27A1-205ENST00000485397 BRD4O60885 1362 aaPredicted RBP27.62■■■□□ 2.01
COL27A1-205ENST00000485397 RGPD1P0DJD0 1748 aa27.62■■■□□ 2.01
COL27A1-205ENST00000485397 USP6P35125 1406 aa27.62■■■□□ 2.01
COL27A1-205ENST00000485397 TRPM1Q7Z4N2 1603 aa27.61■■■□□ 2.01
COL27A1-205ENST00000485397 NLRP6P59044 892 aa27.61■■■□□ 2.01
COL27A1-205ENST00000485397 FAM196AQ6ZSG2 479 aa27.61■■■□□ 2.01
COL27A1-205ENST00000485397 LMO7Q8WWI1 1683 aa27.61■■■□□ 2.01
COL27A1-205ENST00000485397 EVC2Q86UK5 1308 aa27.61■■■□□ 2.01
COL27A1-205ENST00000485397 ROCK2O75116 1388 aaKnown RBP27.6■■■□□ 2.01
COL27A1-205ENST00000485397 ZBTB7CA1YPR0 619 aa27.59■■■□□ 2.01
COL27A1-205ENST00000485397 TRIM37O94972 964 aa27.59■■■□□ 2.01
COL27A1-205ENST00000485397 TCP11L2Q8N4U5 519 aa27.59■■■□□ 2.01
COL27A1-205ENST00000485397 PDE3BQ13370 1112 aa27.58■■■□□ 2.01
COL27A1-205ENST00000485397 EZH2Q15910 746 aaKnown RBP27.57■■■□□ 2
COL27A1-205ENST00000485397 DISP2A7MBM2 1401 aa27.57■■■□□ 2
COL27A1-205ENST00000485397 TNS1Q9HBL0 1735 aaKnown RBP27.56■■■□□ 2
COL27A1-205ENST00000485397 COL5A2P05997 1499 aaPredicted RBP27.55■■■□□ 2
COL27A1-205ENST00000485397 CAMKK2Q96RR4 588 aa27.53■■■□□ 2
COL27A1-205ENST00000485397 THRAP3Q9Y2W1 955 aaKnown RBP27.53■■■□□ 2
COL27A1-205ENST00000485397 SLIT3O75094 1523 aa27.52■■■□□ 2
COL27A1-205ENST00000485397 APBA3O96018 575 aa27.52■■■□□ 2
COL27A1-205ENST00000485397 R3HDM1Q15032 1099 aaKnown RBP27.51■■□□□ 1.99
COL27A1-205ENST00000485397 AATKQ6ZMQ8 1374 aa27.5■■□□□ 1.99
COL27A1-205ENST00000485397 TTC21BQ7Z4L5 1316 aa27.5■■□□□ 1.99
COL27A1-205ENST00000485397 CRB1P82279 1406 aa27.5■■□□□ 1.99
COL27A1-205ENST00000485397 PIK3C2AO00443 1686 aa27.49■■□□□ 1.99
COL27A1-205ENST00000485397 ZNF692Q9BU19 519 aaPredicted RBP27.49■■□□□ 1.99
COL27A1-205ENST00000485397 LRP5O75197 1615 aa27.48■■□□□ 1.99
COL27A1-205ENST00000485397 AXIN2Q9Y2T1 843 aa27.47■■□□□ 1.99
COL27A1-205ENST00000485397 SOX12O15370 315 aa27.45■■□□□ 1.98
COL27A1-205ENST00000485397 TOM1L2Q6ZVM7 507 aa27.45■■□□□ 1.98
COL27A1-205ENST00000485397 CPSF1Q10570 1443 aaKnown RBP27.43■■□□□ 1.98
COL27A1-205ENST00000485397 COL18A1P39060 1754 aa27.43■■□□□ 1.98
COL27A1-205ENST00000485397 ARHGEF25Q86VW2 580 aa27.43■■□□□ 1.98
COL27A1-205ENST00000485397 TTC21AQ8NDW8 1320 aa27.42■■□□□ 1.98
COL27A1-205ENST00000485397 PARP4Q9UKK3 1724 aaKnown RBP27.42■■□□□ 1.98
COL27A1-205ENST00000485397 KCNH5Q8NCM2 988 aa27.42■■□□□ 1.98
COL27A1-205ENST00000485397 CARD11Q9BXL7 1154 aa27.42■■□□□ 1.98
COL27A1-205ENST00000485397 PARD3Q8TEW0 1356 aa27.42■■□□□ 1.98
COL27A1-205ENST00000485397 AKAP12Q02952 1782 aa27.42■■□□□ 1.98
COL27A1-205ENST00000485397 KTN1Q86UP2 1357 aaKnown RBP27.41■■□□□ 1.98
COL27A1-205ENST00000485397 WDR17Q8IZU2 1322 aa27.4■■□□□ 1.98
COL27A1-205ENST00000485397 DDB1Q16531 1140 aa27.38■■□□□ 1.97
COL27A1-205ENST00000485397 SBNO2Q9Y2G9 1366 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms