RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 ITSN1Q15811 1721 aa7.54□□□□□ -1.2
CCDC39-205ENST00000485055 TMED8Q6PL24 325 aaPredicted RBP7.54□□□□□ -1.2
CCDC39-205ENST00000485055 ABCA3Q99758 1704 aa7.54□□□□□ -1.2
CCDC39-205ENST00000485055 STAG3Q9UJ98 1225 aa7.54□□□□□ -1.2
CCDC39-205ENST00000485055 ARHGEF28Q8N1W1 1705 aaKnown RBP7.53□□□□□ -1.2
CCDC39-205ENST00000485055 TRPM3Q9HCF6 1732 aaPredicted RBP7.53□□□□□ -1.2
CCDC39-205ENST00000485055 SOCS7O14512 581 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 CERS3Q8IU89 383 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 WDR70Q9NW82 654 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 ANKARQ7Z5J8 1434 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 NWD2Q9ULI1 1742 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 PROSER2Q86WR7 435 aaPredicted RBP7.53□□□□□ -1.2
CCDC39-205ENST00000485055 HS6ST3Q8IZP7 471 aa7.53□□□□□ -1.2
CCDC39-205ENST00000485055 USP32Q8NFA0 1604 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 CLUAP1Q96AJ1 413 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 MPHOSPH9Q99550 1183 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 RNF216Q9NWF9 866 aaPredicted RBP7.52□□□□□ -1.21
CCDC39-205ENST00000485055 SLAIN2Q9P270 581 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 C1orf167Q5SNV9 1468 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 PXDNQ92626 1479 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 USP54Q70EL1 1684 aa7.52□□□□□ -1.21
CCDC39-205ENST00000485055 ALS2Q96Q42 1657 aa7.51□□□□□ -1.21
CCDC39-205ENST00000485055 CCDC136Q96JN2 1154 aa7.51□□□□□ -1.21
CCDC39-205ENST00000485055 AMOTL2Q9Y2J4 779 aa7.51□□□□□ -1.21
CCDC39-205ENST00000485055 C14orf93Q9H972 538 aaKnown RBP7.51□□□□□ -1.21
CCDC39-205ENST00000485055 SOS2Q07890 1332 aaPredicted RBP7.5□□□□□ -1.21
CCDC39-205ENST00000485055 RAB3GAP2Q9H2M9 1393 aa7.5□□□□□ -1.21
CCDC39-205ENST00000485055 ROBO2Q9HCK4 1378 aa7.5□□□□□ -1.21
CCDC39-205ENST00000485055 YTHDC2Q9H6S0 1430 aaKnown RBP7.5□□□□□ -1.21
CCDC39-205ENST00000485055 IRF5Q13568 498 aa7.49□□□□□ -1.21
CCDC39-205ENST00000485055 SLC26A8Q96RN1 970 aa7.49□□□□□ -1.21
CCDC39-205ENST00000485055 LRP6O75581 1613 aa7.49□□□□□ -1.21
CCDC39-205ENST00000485055 BCCIPQ9P287 314 aaKnown RBP eCLIP7.49□□□□□ -1.21
CCDC39-205ENST00000485055 ZNF316A6NFI3 1004 aaPredicted RBP7.49□□□□□ -1.21
CCDC39-205ENST00000485055 SCAF1Q9H7N4 1312 aaKnown RBP7.49□□□□□ -1.21
CCDC39-205ENST00000485055 DISP3Q9P2K9 1392 aa7.48□□□□□ -1.21
CCDC39-205ENST00000485055 A0A0U1RQG5 324 aaPredicted RBP7.48□□□□□ -1.21
CCDC39-205ENST00000485055 PPP1R15AO75807 674 aaPredicted RBP7.48□□□□□ -1.21
CCDC39-205ENST00000485055 BRD4O60885 1362 aaPredicted RBP7.48□□□□□ -1.21
CCDC39-205ENST00000485055 EIF3AQ14152 1382 aaKnown RBP7.48□□□□□ -1.21
CCDC39-205ENST00000485055 RETREG2Q8NC44 543 aa7.48□□□□□ -1.21
CCDC39-205ENST00000485055 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.48□□□□□ -1.21
CCDC39-205ENST00000485055 TRPM1Q7Z4N2 1603 aa7.47□□□□□ -1.21
CCDC39-205ENST00000485055 RGPD8O14715 1765 aaPredicted RBP7.47□□□□□ -1.21
CCDC39-205ENST00000485055 BRINP3Q76B58 766 aa7.47□□□□□ -1.21
CCDC39-205ENST00000485055 PNPLA6Q8IY17 1366 aa7.47□□□□□ -1.21
CCDC39-205ENST00000485055 TULP4Q9NRJ4 1543 aa7.47□□□□□ -1.21
CCDC39-205ENST00000485055 NRAPQ86VF7 1730 aa7.47□□□□□ -1.21
CCDC39-205ENST00000485055 SBNO1A3KN83 1393 aa7.46□□□□□ -1.21
CCDC39-205ENST00000485055 PKNOX2Q96KN3 472 aa7.46□□□□□ -1.21
CCDC39-205ENST00000485055 RGS17Q9UGC6 210 aaPredicted RBP7.46□□□□□ -1.21
CCDC39-205ENST00000485055 ILDR2Q71H61 639 aa7.46□□□□□ -1.22
CCDC39-205ENST00000485055 ZNF526Q8TF50 670 aaPredicted RBP7.46□□□□□ -1.22
CCDC39-205ENST00000485055 DHX57Q6P158 1386 aaKnown RBP7.46□□□□□ -1.22
CCDC39-205ENST00000485055 FBXW7Q969H0 707 aa7.45□□□□□ -1.22
CCDC39-205ENST00000485055 ATF3P18847 181 aa7.45□□□□□ -1.22
CCDC39-205ENST00000485055 RNF25Q96BH1 459 aaPredicted RBP7.45□□□□□ -1.22
CCDC39-205ENST00000485055 ABCC6O95255 1503 aa7.45□□□□□ -1.22
CCDC39-205ENST00000485055 ADGRF5Q8IZF2 1346 aa7.44□□□□□ -1.22
CCDC39-205ENST00000485055 TICAM2Q86XR7 235 aa7.44□□□□□ -1.22
CCDC39-205ENST00000485055 CIZ1Q9ULV3 898 aaPredicted RBP7.44□□□□□ -1.22
CCDC39-205ENST00000485055 PLCH1Q4KWH8 1693 aa7.44□□□□□ -1.22
CCDC39-205ENST00000485055 AKAP12Q02952 1782 aa7.44□□□□□ -1.22
CCDC39-205ENST00000485055 COL14A1Q05707 1796 aaKnown RBP7.44□□□□□ -1.22
CCDC39-205ENST00000485055 ZMYND10O75800 440 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 FGD1P98174 961 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 MKRN4PQ13434 485 aaPredicted RBP7.43□□□□□ -1.22
CCDC39-205ENST00000485055 LRRC59Q96AG4 307 aaKnown RBP7.43□□□□□ -1.22
CCDC39-205ENST00000485055 PSMD1Q99460 953 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 KDM4CQ9H3R0 1056 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 ATRNO75882 1429 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 ATP7BP35670 1465 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 KDM4AO75164 1064 aa7.43□□□□□ -1.22
CCDC39-205ENST00000485055 TRAK2O60296 914 aa7.42□□□□□ -1.22
CCDC39-205ENST00000485055 PHRF1Q9P1Y6 1649 aaKnown RBP7.42□□□□□ -1.22
CCDC39-205ENST00000485055 SLIT2O94813 1529 aa7.42□□□□□ -1.22
CCDC39-205ENST00000485055 GPRASP1Q5JY77 1395 aa7.42□□□□□ -1.22
CCDC39-205ENST00000485055 PIP4K2BP78356 416 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 ZNF772Q68DY9 489 aaPredicted RBP7.41□□□□□ -1.22
CCDC39-205ENST00000485055 ZNF326Q5BKZ1 582 aaKnown RBP7.41□□□□□ -1.22
CCDC39-205ENST00000485055 TRIM52Q96A61 297 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 QRICH2Q9H0J4 1663 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 NRKQ7Z2Y5 1582 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 SBNO2Q9Y2G9 1366 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 SEMA3EO15041 775 aa7.41□□□□□ -1.22
CCDC39-205ENST00000485055 FNBP4Q8N3X1 1017 aaPredicted RBP7.41□□□□□ -1.22
CCDC39-205ENST00000485055 POLR3AO14802 1390 aaPredicted RBP7.4□□□□□ -1.22
CCDC39-205ENST00000485055 PRDM16Q9HAZ2 1276 aa7.4□□□□□ -1.22
CCDC39-205ENST00000485055 NPHP3Q7Z494 1330 aa7.4□□□□□ -1.22
CCDC39-205ENST00000485055 THSD7AQ9UPZ6 1657 aa7.4□□□□□ -1.22
CCDC39-205ENST00000485055 LMO7Q8WWI1 1683 aa7.4□□□□□ -1.23
CCDC39-205ENST00000485055 WNK3Q9BYP7 1800 aa7.4□□□□□ -1.23
CCDC39-205ENST00000485055 RGPD3A6NKT7 1758 aaPredicted RBP7.39□□□□□ -1.23
CCDC39-205ENST00000485055 RGPD4Q7Z3J3 1758 aa7.39□□□□□ -1.23
CCDC39-205ENST00000485055 CCDC125Q86Z20 511 aa7.39□□□□□ -1.23
CCDC39-205ENST00000485055 TNS3Q68CZ2 1445 aa7.39□□□□□ -1.23
CCDC39-205ENST00000485055 MON2Q7Z3U7 1717 aa7.39□□□□□ -1.23
CCDC39-205ENST00000485055 ITGAEP38570 1179 aa7.38□□□□□ -1.23
CCDC39-205ENST00000485055 ARHGEF10O15013 1369 aa7.38□□□□□ -1.23
CCDC39-205ENST00000485055 SLIT3O75094 1523 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms