RNA–Protein interactions for RNA: ENST00000484038.1

SEMA3D-204, Transcript of semaphorin 3D, humanhuman

TSL 1 (best)

Gene SEMA3D, Length 1,503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-204ENST00000484038 SYCP2Q9BX26 1530 aa9.8□□□□□ -0.84
SEMA3D-204ENST00000484038 IQSEC2Q5JU85 1478 aa9.8□□□□□ -0.84
SEMA3D-204ENST00000484038 C3orf80F5H4A9 247 aa9.8□□□□□ -0.84
SEMA3D-204ENST00000484038 WNT2BQ93097 391 aa9.8□□□□□ -0.84
SEMA3D-204ENST00000484038 ZNF777Q9ULD5 760 aaPredicted RBP9.8□□□□□ -0.84
SEMA3D-204ENST00000484038 SUPT6HQ7KZ85 1726 aaKnown RBP9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 CASKIN1Q8WXD9 1431 aa9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 ANKK1Q8NFD2 765 aa9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 RBM46Q8TBY0 533 aaKnown RBP9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 ZC3H15Q8WU90 426 aaKnown RBP9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 ZFRQ96KR1 1074 aaKnown RBP9.79□□□□□ -0.84
SEMA3D-204ENST00000484038 NPATQ14207 1427 aa9.78□□□□□ -0.84
SEMA3D-204ENST00000484038 KRI1Q8N9T8 703 aaKnown RBP9.78□□□□□ -0.84
SEMA3D-204ENST00000484038 CLTCQ00610 1675 aaKnown RBP9.78□□□□□ -0.84
SEMA3D-204ENST00000484038 MYO3AQ8NEV4 1616 aa9.78□□□□□ -0.84
SEMA3D-204ENST00000484038 SPAG9O60271 1321 aaKnown RBP9.77□□□□□ -0.84
SEMA3D-204ENST00000484038 RNF40O75150 1001 aa9.77□□□□□ -0.84
SEMA3D-204ENST00000484038 ADGRG1Q9Y653 693 aa9.77□□□□□ -0.84
SEMA3D-204ENST00000484038 ZMYM3Q14202 1370 aa9.77□□□□□ -0.85
SEMA3D-204ENST00000484038 ZNF335Q9H4Z2 1342 aaPredicted RBP9.77□□□□□ -0.85
SEMA3D-204ENST00000484038 HDGFP51858 240 aaKnown RBP9.77□□□□□ -0.85
SEMA3D-204ENST00000484038 ATP7AQ04656 1500 aa9.77□□□□□ -0.85
SEMA3D-204ENST00000484038 FYCO1Q9BQS8 1478 aa9.76□□□□□ -0.85
SEMA3D-204ENST00000484038 ZNF142P52746 1687 aaPredicted RBP9.76□□□□□ -0.85
SEMA3D-204ENST00000484038 MAP2K5Q13163 448 aa9.76□□□□□ -0.85
SEMA3D-204ENST00000484038 INO80Q9ULG1 1556 aaPredicted RBP9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 CEP170BQ9Y4F5 1589 aaPredicted RBP9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 UBAP1LF5GYI3 381 aa9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 OATP04181 439 aa9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 HNRNPMP52272 730 aaKnown RBP eCLIP9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 LRCH3Q96II8 777 aa9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 PLXNC1O60486 1568 aa9.75□□□□□ -0.85
SEMA3D-204ENST00000484038 GPATCH8Q9UKJ3 1502 aaKnown RBP9.74□□□□□ -0.85
SEMA3D-204ENST00000484038 A2MP01023 1474 aa9.74□□□□□ -0.85
SEMA3D-204ENST00000484038 PTPN5P54829 565 aa9.74□□□□□ -0.85
SEMA3D-204ENST00000484038 PLA2R1Q13018 1463 aa9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 BCAMP50895 628 aa9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 GGT6Q6P531 493 aa9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 SAMD7Q7Z3H4 446 aa9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 EYA1Q99502 592 aa9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.73□□□□□ -0.85
SEMA3D-204ENST00000484038 PTPRKQ15262 1439 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 ZMYND10O75800 440 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 DNAJB2P25686 324 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 PXYLP1Q8TE99 480 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 TCOF1Q13428 1488 aaKnown RBP9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 PLEKHH2Q8IVE3 1493 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 SLC4A3P48751 1232 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 THSD4Q6ZMP0 1018 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 METTL3Q86U44 580 aaKnown RBP9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 CCDC102AQ96A19 550 aa9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 CFDP1Q9UEE9 299 aaPredicted RBP9.72□□□□□ -0.85
SEMA3D-204ENST00000484038 CCNB3Q8WWL7 1395 aa9.71□□□□□ -0.85
SEMA3D-204ENST00000484038 ADGBQ8N7X0 1667 aa9.71□□□□□ -0.85
SEMA3D-204ENST00000484038 MINK1Q8N4C8 1332 aaPredicted RBP9.71□□□□□ -0.85
SEMA3D-204ENST00000484038 KIAA1107Q9UPP5 1409 aa9.71□□□□□ -0.86
SEMA3D-204ENST00000484038 RCCD1A6NED2 376 aa9.71□□□□□ -0.86
SEMA3D-204ENST00000484038 SOWAHBA6NEL2 793 aa9.71□□□□□ -0.86
SEMA3D-204ENST00000484038 IRF6O14896 467 aa9.7□□□□□ -0.86
SEMA3D-204ENST00000484038 SWT1Q5T5J6 900 aaKnown RBP9.7□□□□□ -0.86
SEMA3D-204ENST00000484038 BARGINQ6ZT62 677 aa9.7□□□□□ -0.86
SEMA3D-204ENST00000484038 MTUS2Q5JR59 1369 aa9.69□□□□□ -0.86
SEMA3D-204ENST00000484038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.69□□□□□ -0.86
SEMA3D-204ENST00000484038 NLRP7Q8WX94 980 aa9.69□□□□□ -0.86
SEMA3D-204ENST00000484038 A2ML1A8K2U0 1454 aa9.68□□□□□ -0.86
SEMA3D-204ENST00000484038 POLR1AO95602 1720 aaPredicted RBP9.68□□□□□ -0.86
SEMA3D-204ENST00000484038 DNMT1P26358 1616 aaKnown RBP9.68□□□□□ -0.86
SEMA3D-204ENST00000484038 HCSTQ9UBK5 93 aa9.68□□□□□ -0.86
SEMA3D-204ENST00000484038 HPS5Q9UPZ3 1129 aa9.68□□□□□ -0.86
SEMA3D-204ENST00000484038 PIP4K2BP78356 416 aa9.67□□□□□ -0.86
SEMA3D-204ENST00000484038 SLF2Q8IX21 1173 aa9.67□□□□□ -0.86
SEMA3D-204ENST00000484038 TIAM1Q13009 1591 aa9.67□□□□□ -0.86
SEMA3D-204ENST00000484038 TMEM134Q9H6X4 195 aa9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 MED1Q15648 1581 aaPredicted RBP9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 ZNF644Q9H582 1327 aaPredicted RBP9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 NEURL4Q96JN8 1562 aa9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 PPP4CP60510 307 aa9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 TSR3Q9UJK0 312 aaKnown RBP9.66□□□□□ -0.86
SEMA3D-204ENST00000484038 CPS1P31327 1500 aa9.65□□□□□ -0.86
SEMA3D-204ENST00000484038 HSPA1LP34931 641 aa9.65□□□□□ -0.86
SEMA3D-204ENST00000484038 PHOX2BQ99453 314 aa9.65□□□□□ -0.86
SEMA3D-204ENST00000484038 EHBP1L1Q8N3D4 1523 aa9.65□□□□□ -0.87
SEMA3D-204ENST00000484038 KDM5DQ9BY66 1539 aa9.65□□□□□ -0.87
SEMA3D-204ENST00000484038 TNRQ92752 1358 aa9.64□□□□□ -0.87
SEMA3D-204ENST00000484038 MBD5Q9P267 1494 aa9.64□□□□□ -0.87
SEMA3D-204ENST00000484038 TOM1O60784 492 aa9.64□□□□□ -0.87
SEMA3D-204ENST00000484038 SLC24A3Q9HC58 644 aa9.64□□□□□ -0.87
SEMA3D-204ENST00000484038 WBP1LQ9NX94 342 aa9.64□□□□□ -0.87
SEMA3D-204ENST00000484038 PZPP20742 1482 aa9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 SHANK2Q9UPX8 1470 aa9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 KIF3BO15066 747 aa9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 FBXO31Q5XUX0 539 aaPredicted RBP9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 DHX29Q7Z478 1369 aaKnown RBP9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 RTEL1-TNFRSF6BF6WH68 1400 aa9.63□□□□□ -0.87
SEMA3D-204ENST00000484038 MDM2Q00987 491 aaPredicted RBP9.62□□□□□ -0.87
SEMA3D-204ENST00000484038 TPRNQ4KMQ1 711 aa9.62□□□□□ -0.87
SEMA3D-204ENST00000484038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.62□□□□□ -0.87
SEMA3D-204ENST00000484038 NECTIN2Q92692 538 aa9.61□□□□□ -0.87
SEMA3D-204ENST00000484038 AK7Q96M32 723 aa9.61□□□□□ -0.87
SEMA3D-204ENST00000484038 CCDC141Q6ZP82 1450 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms