RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CAMSAP1Q5T5Y3 1602 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 CCDC27Q2M243 656 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 HSCBQ8IWL3 235 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 MYH16Q9H6N6 1097 aa16.78■□□□□ 0.28
USP40-214ENST00000483519 RIMS1Q86UR5 1692 aaKnown RBP16.77■□□□□ 0.28
USP40-214ENST00000483519 ABCC3O15438 1527 aa16.77■□□□□ 0.28
USP40-214ENST00000483519 TNNQ9UQP3 1299 aa16.77■□□□□ 0.28
USP40-214ENST00000483519 RRP7AQ9Y3A4 280 aaKnown RBP16.77■□□□□ 0.28
USP40-214ENST00000483519 SBNO2Q9Y2G9 1366 aa16.77■□□□□ 0.27
USP40-214ENST00000483519 HSP90AA1P07900 732 aaKnown RBP16.76■□□□□ 0.27
USP40-214ENST00000483519 MFAP1P55081 439 aaKnown RBP16.76■□□□□ 0.27
USP40-214ENST00000483519 MORC1Q86VD1 984 aa16.76■□□□□ 0.27
USP40-214ENST00000483519 BCL2L13Q9BXK5 485 aa16.76■□□□□ 0.27
USP40-214ENST00000483519 CLTCQ00610 1675 aaKnown RBP16.76■□□□□ 0.27
USP40-214ENST00000483519 FTSJ3Q8IY81 847 aaKnown RBP16.76■□□□□ 0.27
USP40-214ENST00000483519 GRPEL1Q9HAV7 217 aa16.76■□□□□ 0.27
USP40-214ENST00000483519 ZKSCAN2Q63HK3 967 aa16.75■□□□□ 0.27
USP40-214ENST00000483519 RRP9O43818 475 aaKnown RBP16.75■□□□□ 0.27
USP40-214ENST00000483519 NSD3Q9BZ95 1437 aa16.75■□□□□ 0.27
USP40-214ENST00000483519 PTPRMP28827 1452 aa16.74■□□□□ 0.27
USP40-214ENST00000483519 PDIA4P13667 645 aaKnown RBP16.74■□□□□ 0.27
USP40-214ENST00000483519 NOS1P29475 1434 aa16.73■□□□□ 0.27
USP40-214ENST00000483519 CT47B1P0C2W7 299 aaPredicted RBP16.73■□□□□ 0.27
USP40-214ENST00000483519 CFAP70Q5T0N1 1121 aa16.73■□□□□ 0.27
USP40-214ENST00000483519 DZIP1LQ8IYY4 767 aaKnown RBP16.73■□□□□ 0.27
USP40-214ENST00000483519 HSP90AA2PQ14568 343 aaPredicted RBP16.73■□□□□ 0.27
USP40-214ENST00000483519 CFAP53Q96M91 514 aa16.73■□□□□ 0.27
USP40-214ENST00000483519 NCOA3Q9Y6Q9 1424 aa16.72■□□□□ 0.27
USP40-214ENST00000483519 HDAC1Q13547 482 aaPredicted RBP16.72■□□□□ 0.27
USP40-214ENST00000483519 RPGRIP1LQ68CZ1 1315 aa16.72■□□□□ 0.27
USP40-214ENST00000483519 PPLO60437 1756 aa16.72■□□□□ 0.27
USP40-214ENST00000483519 ESPNB1AK53 854 aa16.71■□□□□ 0.27
USP40-214ENST00000483519 USP32Q8NFA0 1604 aa16.71■□□□□ 0.27
USP40-214ENST00000483519 PTMSP20962 102 aa16.7■□□□□ 0.26
USP40-214ENST00000483519 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
USP40-214ENST00000483519 TRIM44Q96DX7 344 aaPredicted RBP16.7■□□□□ 0.26
USP40-214ENST00000483519 CIZ1Q9ULV3 898 aaPredicted RBP16.69■□□□□ 0.26
USP40-214ENST00000483519 NPATQ14207 1427 aa16.69■□□□□ 0.26
USP40-214ENST00000483519 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
USP40-214ENST00000483519 GBP4Q96PP9 640 aa16.69■□□□□ 0.26
USP40-214ENST00000483519 DDX19BQ9UMR2 479 aa16.69■□□□□ 0.26
USP40-214ENST00000483519 C3P01024 1663 aa16.69■□□□□ 0.26
USP40-214ENST00000483519 SNX21Q969T3 373 aa16.69■□□□□ 0.26
USP40-214ENST00000483519 ZFYVE9O95405 1425 aa16.68■□□□□ 0.26
USP40-214ENST00000483519 DDIT3P35638 169 aa16.68■□□□□ 0.26
USP40-214ENST00000483519 SKOR2Q2VWA4 1001 aaPredicted RBP16.68■□□□□ 0.26
USP40-214ENST00000483519 ADGRB2O60241 1585 aa16.67■□□□□ 0.26
USP40-214ENST00000483519 ADGRF5Q8IZF2 1346 aa16.67■□□□□ 0.26
USP40-214ENST00000483519 CEBPAP49715 358 aaPredicted RBP16.67■□□□□ 0.26
USP40-214ENST00000483519 RBM25P49756 843 aaKnown RBP16.67■□□□□ 0.26
USP40-214ENST00000483519 MTHFSP49914 203 aa16.66■□□□□ 0.26
USP40-214ENST00000483519 SMC5Q8IY18 1101 aa16.66■□□□□ 0.26
USP40-214ENST00000483519 PKNOX2Q96KN3 472 aa16.66■□□□□ 0.26
USP40-214ENST00000483519 SMC4Q9NTJ3 1288 aa16.66■□□□□ 0.26
USP40-214ENST00000483519 SETD1BQ9UPS6 1966 aaKnown RBP16.66■□□□□ 0.26
USP40-214ENST00000483519 ITPRIPQ8IWB1 547 aa16.65■□□□□ 0.26
USP40-214ENST00000483519 HSP90AB1P08238 724 aaKnown RBP16.64■□□□□ 0.25
USP40-214ENST00000483519 TNPO1Q92973 898 aaKnown RBP16.64■□□□□ 0.25
USP40-214ENST00000483519 TRIM27P14373 513 aa16.64■□□□□ 0.25
USP40-214ENST00000483519 QRICH2Q9H0J4 1663 aa16.63■□□□□ 0.25
USP40-214ENST00000483519 TNRQ92752 1358 aa16.63■□□□□ 0.25
USP40-214ENST00000483519 ATF7IPQ6VMQ6 1270 aa16.63■□□□□ 0.25
USP40-214ENST00000483519 ERBB4Q15303 1308 aa16.63■□□□□ 0.25
USP40-214ENST00000483519 U2AF1L5P0DN76 240 aaPredicted RBP16.62■□□□□ 0.25
USP40-214ENST00000483519 U2AF1Q01081 240 aaKnown RBP eCLIP16.62■□□□□ 0.25
USP40-214ENST00000483519 RAB3GAP1Q15042 981 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 UGGT1Q9NYU2 1555 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 NSD2O96028 1365 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 SPATA31D1Q6ZQQ2 1576 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 TPM2P07951 284 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 FBXO31Q5XUX0 539 aaPredicted RBP16.62■□□□□ 0.25
USP40-214ENST00000483519 SLC12A5Q9H2X9 1139 aa16.62■□□□□ 0.25
USP40-214ENST00000483519 VSIG10Q8N0Z9 540 aa16.61■□□□□ 0.25
USP40-214ENST00000483519 PREX1Q8TCU6 1659 aa16.61■□□□□ 0.25
USP40-214ENST00000483519 ABCC11Q96J66 1382 aa16.6■□□□□ 0.25
USP40-214ENST00000483519 CFAP65Q6ZU64 1925 aaKnown RBP16.6■□□□□ 0.25
USP40-214ENST00000483519 TSR2Q969E8 191 aaKnown RBP16.6■□□□□ 0.25
USP40-214ENST00000483519 NUCB1Q02818 461 aa16.6■□□□□ 0.25
USP40-214ENST00000483519 EXOSC9Q06265 439 aaKnown RBP16.6■□□□□ 0.25
USP40-214ENST00000483519 SSH1Q8WYL5 1049 aa16.59■□□□□ 0.25
USP40-214ENST00000483519 PUS7Q96PZ0 661 aaKnown RBP16.59■□□□□ 0.25
USP40-214ENST00000483519 CCDC173Q0VFZ6 552 aa16.59■□□□□ 0.25
USP40-214ENST00000483519 SLC52A1Q9NWF4 448 aa16.59■□□□□ 0.25
USP40-214ENST00000483519 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
USP40-214ENST00000483519 GAS2L3Q86XJ1 694 aa16.58■□□□□ 0.25
USP40-214ENST00000483519 ZBTB40Q9NUA8 1239 aa16.58■□□□□ 0.25
USP40-214ENST00000483519 GOLGA6L22H0YM25 854 aa16.58■□□□□ 0.24
USP40-214ENST00000483519 IPO8O15397 1037 aaKnown RBP16.58■□□□□ 0.24
USP40-214ENST00000483519 NEXMIFQ5QGS0 1516 aa16.57■□□□□ 0.24
USP40-214ENST00000483519 IL16Q14005 1332 aa16.57■□□□□ 0.24
USP40-214ENST00000483519 BMP2KLQ5H9B9 411 aa16.57■□□□□ 0.24
USP40-214ENST00000483519 ANP32BQ92688 251 aaKnown RBP16.57■□□□□ 0.24
USP40-214ENST00000483519 NOB1Q9ULX3 412 aaKnown RBP16.57■□□□□ 0.24
USP40-214ENST00000483519 TRAK1Q9UPV9 953 aa16.57■□□□□ 0.24
USP40-214ENST00000483519 ADGRB1O14514 1584 aa16.57■□□□□ 0.24
USP40-214ENST00000483519 TMEM57Q8N5G2 664 aa16.56■□□□□ 0.24
USP40-214ENST00000483519 ZMYND15Q9H091 742 aa16.56■□□□□ 0.24
USP40-214ENST00000483519 CHD1LQ86WJ1 897 aa16.56■□□□□ 0.24
USP40-214ENST00000483519 HAP1P54257 671 aaPredicted RBP16.55■□□□□ 0.24
USP40-214ENST00000483519 ANKRD36BQ8N2N9 1353 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms