RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 DZIP1LQ8IYY4 767 aaKnown RBP19.61■□□□□ 0.73
C9orf3-218ENST00000482056 PLEKHF1Q96S99 279 aa19.61■□□□□ 0.73
C9orf3-218ENST00000482056 PCDHB15Q9Y5E8 787 aa19.61■□□□□ 0.73
C9orf3-218ENST00000482056 KIF20BQ96Q89 1820 aa19.61■□□□□ 0.73
C9orf3-218ENST00000482056 ALKQ9UM73 1620 aa19.6■□□□□ 0.73
C9orf3-218ENST00000482056 FYB1O15117 783 aa19.6■□□□□ 0.73
C9orf3-218ENST00000482056 CD163L1Q9NR16 1453 aa19.59■□□□□ 0.73
C9orf3-218ENST00000482056 SMC4Q9NTJ3 1288 aa19.59■□□□□ 0.73
C9orf3-218ENST00000482056 STAG3Q9UJ98 1225 aa19.59■□□□□ 0.73
C9orf3-218ENST00000482056 DIAPH1O60610 1272 aaKnown RBP19.58■□□□□ 0.73
C9orf3-218ENST00000482056 PDZRN3Q9UPQ7 1066 aa19.58■□□□□ 0.73
C9orf3-218ENST00000482056 NLRP1Q9C000 1473 aa19.58■□□□□ 0.72
C9orf3-218ENST00000482056 TNNQ9UQP3 1299 aa19.57■□□□□ 0.72
C9orf3-218ENST00000482056 EXOSC9Q06265 439 aaKnown RBP19.57■□□□□ 0.72
C9orf3-218ENST00000482056 TSR2Q969E8 191 aaKnown RBP19.56■□□□□ 0.72
C9orf3-218ENST00000482056 CDK19Q9BWU1 502 aa19.56■□□□□ 0.72
C9orf3-218ENST00000482056 PPP6R1Q9UPN7 881 aa19.56■□□□□ 0.72
C9orf3-218ENST00000482056 USP19O94966 1318 aa19.56■□□□□ 0.72
C9orf3-218ENST00000482056 DDX19BQ9UMR2 479 aa19.55■□□□□ 0.72
C9orf3-218ENST00000482056 TRIM35Q9UPQ4 493 aa19.55■□□□□ 0.72
C9orf3-218ENST00000482056 ARHGEF40Q8TER5 1519 aa19.55■□□□□ 0.72
C9orf3-218ENST00000482056 PNPLA6Q8IY17 1366 aa19.54■□□□□ 0.72
C9orf3-218ENST00000482056 DLC1Q96QB1 1528 aa19.54■□□□□ 0.72
C9orf3-218ENST00000482056 RIPK4P57078 832 aa19.54■□□□□ 0.72
C9orf3-218ENST00000482056 SENP3Q9H4L4 574 aaPredicted RBP19.54■□□□□ 0.72
C9orf3-218ENST00000482056 GSE1Q14687 1217 aa19.53■□□□□ 0.72
C9orf3-218ENST00000482056 CDC42BPGQ6DT37 1551 aa19.53■□□□□ 0.72
C9orf3-218ENST00000482056 ATP7BP35670 1465 aa19.53■□□□□ 0.72
C9orf3-218ENST00000482056 KIF16BQ96L93 1317 aa19.52■□□□□ 0.72
C9orf3-218ENST00000482056 REREQ9P2R6 1566 aa19.52■□□□□ 0.72
C9orf3-218ENST00000482056 IPO8O15397 1037 aaKnown RBP19.52■□□□□ 0.72
C9orf3-218ENST00000482056 FCHSD2O94868 740 aa19.52■□□□□ 0.72
C9orf3-218ENST00000482056 ATF7IPQ6VMQ6 1270 aa19.52■□□□□ 0.72
C9orf3-218ENST00000482056 FBXO31Q5XUX0 539 aaPredicted RBP19.52■□□□□ 0.71
C9orf3-218ENST00000482056 CABP1Q9NZU7 370 aa19.52■□□□□ 0.71
C9orf3-218ENST00000482056 SEC24BO95487 1268 aa19.51■□□□□ 0.71
C9orf3-218ENST00000482056 SSH1Q8WYL5 1049 aa19.51■□□□□ 0.71
C9orf3-218ENST00000482056 TRIM27P14373 513 aa19.5■□□□□ 0.71
C9orf3-218ENST00000482056 HDAC1Q13547 482 aaPredicted RBP19.5■□□□□ 0.71
C9orf3-218ENST00000482056 ITPRIPQ8IWB1 547 aa19.5■□□□□ 0.71
C9orf3-218ENST00000482056 AGLP35573 1532 aa19.5■□□□□ 0.71
C9orf3-218ENST00000482056 ALDH1L2Q3SY69 923 aa19.48■□□□□ 0.71
C9orf3-218ENST00000482056 ZNF428Q96B54 188 aa19.48■□□□□ 0.71
C9orf3-218ENST00000482056 TBC1D32Q96NH3 1257 aa19.48■□□□□ 0.71
C9orf3-218ENST00000482056 LRRC7Q96NW7 1537 aa19.47■□□□□ 0.71
C9orf3-218ENST00000482056 CALD1Q05682 793 aaKnown RBP19.47■□□□□ 0.71
C9orf3-218ENST00000482056 NOB1Q9ULX3 412 aaKnown RBP19.47■□□□□ 0.71
C9orf3-218ENST00000482056 A2ML1A8K2U0 1454 aa19.46■□□□□ 0.71
C9orf3-218ENST00000482056 RIMS2Q9UQ26 1411 aa19.46■□□□□ 0.71
C9orf3-218ENST00000482056 SPATA31D1Q6ZQQ2 1576 aa19.46■□□□□ 0.71
C9orf3-218ENST00000482056 FAM135BQ49AJ0 1406 aa19.45■□□□□ 0.7
C9orf3-218ENST00000482056 FRAT2O75474 233 aaPredicted RBP19.44■□□□□ 0.7
C9orf3-218ENST00000482056 CHMP4BQ9H444 224 aaKnown RBP19.44■□□□□ 0.7
C9orf3-218ENST00000482056 SETD1AO15047 1707 aaKnown RBP19.44■□□□□ 0.7
C9orf3-218ENST00000482056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.44■□□□□ 0.7
C9orf3-218ENST00000482056 RSPH6AQ9H0K4 717 aa19.44■□□□□ 0.7
C9orf3-218ENST00000482056 PRKAR2BP31323 418 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 FAM69CQ0P6D2 419 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 RIMBP3CA6NJZ7 1639 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 RIMBP3BA6NNM3 1639 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 RIMBP3Q9UFD9 1639 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 MAP2P11137 1827 aaKnown RBP19.43■□□□□ 0.7
C9orf3-218ENST00000482056 EDC4Q6P2E9 1401 aaKnown RBP19.43■□□□□ 0.7
C9orf3-218ENST00000482056 PPIP5K1Q6PFW1 1433 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 DIP2BQ9P265 1576 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 POLKQ9UBT6 870 aa19.43■□□□□ 0.7
C9orf3-218ENST00000482056 TMEM57Q8N5G2 664 aa19.42■□□□□ 0.7
C9orf3-218ENST00000482056 BRPF1P55201 1214 aaPredicted RBP19.41■□□□□ 0.7
C9orf3-218ENST00000482056 NFE2L2Q16236 605 aa19.41■□□□□ 0.7
C9orf3-218ENST00000482056 SMC5Q8IY18 1101 aa19.41■□□□□ 0.7
C9orf3-218ENST00000482056 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.41■□□□□ 0.7
C9orf3-218ENST00000482056 ZBTB40Q9NUA8 1239 aa19.41■□□□□ 0.7
C9orf3-218ENST00000482056 WAPLQ7Z5K2 1190 aa19.41■□□□□ 0.7
C9orf3-218ENST00000482056 CYB5RLQ6IPT4 315 aa19.4■□□□□ 0.7
C9orf3-218ENST00000482056 TSPOAP1O95153 1857 aa19.39■□□□□ 0.69
C9orf3-218ENST00000482056 CDK12Q9NYV4 1490 aaPredicted RBP19.39■□□□□ 0.69
C9orf3-218ENST00000482056 GNAI1P63096 354 aa19.38■□□□□ 0.69
C9orf3-218ENST00000482056 LMOD3Q0VAK6 560 aa19.38■□□□□ 0.69
C9orf3-218ENST00000482056 CPSF1Q10570 1443 aaKnown RBP19.38■□□□□ 0.69
C9orf3-218ENST00000482056 WASLO00401 505 aaPredicted RBP19.37■□□□□ 0.69
C9orf3-218ENST00000482056 ARHGAP45Q92619 1136 aa19.37■□□□□ 0.69
C9orf3-218ENST00000482056 SLKQ9H2G2 1235 aaPredicted RBP19.37■□□□□ 0.69
C9orf3-218ENST00000482056 IFT57Q9NWB7 429 aa19.37■□□□□ 0.69
C9orf3-218ENST00000482056 AATKQ6ZMQ8 1374 aa19.37■□□□□ 0.69
C9orf3-218ENST00000482056 C22orf23Q9BZE7 217 aa19.36■□□□□ 0.69
C9orf3-218ENST00000482056 HDGFP51858 240 aaKnown RBP19.35■□□□□ 0.69
C9orf3-218ENST00000482056 TBC1D2Q9BYX2 928 aa19.35■□□□□ 0.69
C9orf3-218ENST00000482056 KNDC1Q76NI1 1749 aa19.35■□□□□ 0.69
C9orf3-218ENST00000482056 HMOX1P09601 288 aa19.34■□□□□ 0.69
C9orf3-218ENST00000482056 NUCB1Q02818 461 aa19.34■□□□□ 0.69
C9orf3-218ENST00000482056 COG3Q96JB2 828 aa19.34■□□□□ 0.69
C9orf3-218ENST00000482056 IL13P35225 146 aa19.33■□□□□ 0.69
C9orf3-218ENST00000482056 MFAP1P55081 439 aaKnown RBP19.33■□□□□ 0.69
C9orf3-218ENST00000482056 SIRT1Q96EB6 747 aa19.33■□□□□ 0.69
C9orf3-218ENST00000482056 ANTXR1Q9H6X2 564 aa19.33■□□□□ 0.69
C9orf3-218ENST00000482056 MON2Q7Z3U7 1717 aa19.33■□□□□ 0.69
C9orf3-218ENST00000482056 NRXN3Q9Y4C0 1643 aa19.33■□□□□ 0.69
C9orf3-218ENST00000482056 ESF1Q9H501 851 aaKnown RBP19.33■□□□□ 0.68
C9orf3-218ENST00000482056 EMILIN1Q9Y6C2 1016 aa19.32■□□□□ 0.68
C9orf3-218ENST00000482056 PTCH1Q13635 1447 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms