RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 GNAI3P08754 354 aa11.38□□□□□ -0.59
VEGFA-212ENST00000480614 CCAR1Q8IX12 1150 aaKnown RBP11.38□□□□□ -0.59
VEGFA-212ENST00000480614 GAS2L2Q8NHY3 880 aa11.38□□□□□ -0.59
VEGFA-212ENST00000480614 BRD4O60885 1362 aaPredicted RBP11.38□□□□□ -0.59
VEGFA-212ENST00000480614 CCDC27Q2M243 656 aa11.38□□□□□ -0.59
VEGFA-212ENST00000480614 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.38□□□□□ -0.595e-41■□□□□ 9.6
VEGFA-212ENST00000480614 DACH1Q9UI36 760 aa11.37□□□□□ -0.59
VEGFA-212ENST00000480614 ELL2O00472 640 aaPredicted RBP11.37□□□□□ -0.59
VEGFA-212ENST00000480614 CLASRPQ8N2M8 674 aaKnown RBP11.37□□□□□ -0.59
VEGFA-212ENST00000480614 ANKRD1Q15327 319 aa11.37□□□□□ -0.59
VEGFA-212ENST00000480614 PAF1Q8N7H5 531 aa11.37□□□□□ -0.59
VEGFA-212ENST00000480614 FSD1Q9BTV5 496 aa11.37□□□□□ -0.59
VEGFA-212ENST00000480614 CAVIN1Q6NZI2 390 aaKnown RBP11.36□□□□□ -0.59
VEGFA-212ENST00000480614 ARHGAP5Q13017 1502 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 LEKR1Q6ZMV7 388 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 GPRASP1Q5JY77 1395 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 SMC2O95347 1197 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 SEPT7Q16181 437 aaKnown RBP11.36□□□□□ -0.59
VEGFA-212ENST00000480614 TRIM5Q9C035 493 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 INCENPQ9NQS7 918 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 EXOC6Q8TAG9 804 aa11.36□□□□□ -0.59
VEGFA-212ENST00000480614 RRP9O43818 475 aaKnown RBP11.36□□□□□ -0.59
VEGFA-212ENST00000480614 IKQ13123 557 aaPredicted RBP11.35□□□□□ -0.59
VEGFA-212ENST00000480614 APAF1O14727 1248 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 TRIM22Q8IYM9 498 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 TRIM21P19474 475 aaKnown RBP11.35□□□□□ -0.59
VEGFA-212ENST00000480614 TSPY26PQ9H489 355 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 CCDC30Q5VVM6 783 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 AEBP1Q8IUX7 1158 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 DNAI2Q9GZS0 605 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 FANCD2Q9BXW9 1451 aa11.35□□□□□ -0.59
VEGFA-212ENST00000480614 GAPVD1Q14C86 1478 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 PPFIBP1Q86W92 1011 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 NEUROD6Q96NK8 337 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 CDKL5O76039 1030 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 GON4LQ3T8J9 2241 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 KRT18P05783 430 aaKnown RBP11.34□□□□□ -0.59
VEGFA-212ENST00000480614 PLIN1O60240 522 aa11.34□□□□□ -0.59
VEGFA-212ENST00000480614 CT47B1P0C2W7 299 aaPredicted RBP11.34□□□□□ -0.59
VEGFA-212ENST00000480614 EIF3JO75822 258 aaKnown RBP11.33□□□□□ -0.6
VEGFA-212ENST00000480614 NACAP1Q9BZK3 213 aa11.33□□□□□ -0.6
VEGFA-212ENST00000480614 KIAA0754O94854 1291 aa11.33□□□□□ -0.6
VEGFA-212ENST00000480614 TSPYL1Q9H0U9 437 aa11.33□□□□□ -0.6
VEGFA-212ENST00000480614 GBP2P32456 591 aaPredicted RBP11.33□□□□□ -0.6
VEGFA-212ENST00000480614 HECW1Q76N89 1606 aa11.33□□□□□ -0.6
VEGFA-212ENST00000480614 CBFA2T2O43439 604 aa11.33□□□□□ -0.6
VEGFA-212ENST00000480614 FOSBP53539 338 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 PLEKHH2Q8IVE3 1493 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 STK38Q15208 465 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 SRCIN1Q9C0H9 1055 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 CCDC192P0DO97 292 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 PLEKHO1Q53GL0 409 aaPredicted RBP11.32□□□□□ -0.6
VEGFA-212ENST00000480614 FYB1O15117 783 aa11.32□□□□□ -0.6
VEGFA-212ENST00000480614 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.31□□□□□ -0.6
VEGFA-212ENST00000480614 LNPKQ9C0E8 428 aa11.31□□□□□ -0.6
VEGFA-212ENST00000480614 ZSCAN25Q6NSZ9 544 aa11.31□□□□□ -0.6
VEGFA-212ENST00000480614 AXDND1Q5T1B0 1012 aaPredicted RBP11.31□□□□□ -0.6
VEGFA-212ENST00000480614 ERLIN1O75477 346 aa11.31□□□□□ -0.6
VEGFA-212ENST00000480614 NECTIN2Q92692 538 aa11.31□□□□□ -0.6
VEGFA-212ENST00000480614 NLRP2Q9NX02 1062 aa11.31□□□□□ -0.6
VEGFA-212ENST00000480614 FGD6Q6ZV73 1430 aa11.3□□□□□ -0.6
VEGFA-212ENST00000480614 CCT4P50991 539 aaKnown RBP11.3□□□□□ -0.6
VEGFA-212ENST00000480614 NEFHP12036 1026 aa11.3□□□□□ -0.6
VEGFA-212ENST00000480614 BMP2KQ9NSY1 1161 aaPredicted RBP11.3□□□□□ -0.6
VEGFA-212ENST00000480614 NOL7Q9UMY1 257 aaKnown RBP11.3□□□□□ -0.6
VEGFA-212ENST00000480614 GNAI2P04899 355 aa11.3□□□□□ -0.6
VEGFA-212ENST00000480614 USP8P40818 1118 aa11.3□□□□□ -0.6
VEGFA-212ENST00000480614 WDR33Q9C0J8 1336 aaKnown RBP11.29□□□□□ -0.6
VEGFA-212ENST00000480614 CCDC158Q5M9N0 1113 aa11.29□□□□□ -0.6
VEGFA-212ENST00000480614 GCC1Q96CN9 775 aa11.29□□□□□ -0.6
VEGFA-212ENST00000480614 DEF6Q9H4E7 631 aa11.29□□□□□ -0.6
VEGFA-212ENST00000480614 EFCAB5A4FU69 1503 aa11.29□□□□□ -0.6
VEGFA-212ENST00000480614 PNISRQ8TF01 805 aaKnown RBP11.29□□□□□ -0.6
VEGFA-212ENST00000480614 PRKCSHP14314 528 aaPredicted RBP11.28□□□□□ -0.6
VEGFA-212ENST00000480614 ENOX2Q16206 610 aaKnown RBP11.28□□□□□ -0.6
VEGFA-212ENST00000480614 POTEJP0CG39 1038 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 TTLL5Q6EMB2 1281 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 WASF1Q92558 559 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 PDCL3Q9H2J4 239 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 CTNNA3Q9UI47 895 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 EHBP1L1Q8N3D4 1523 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 SURF6O75683 361 aaKnown RBP11.28□□□□□ -0.6
VEGFA-212ENST00000480614 SLC4A3P48751 1232 aa11.28□□□□□ -0.6
VEGFA-212ENST00000480614 KIF2AO00139 706 aaPredicted RBP11.27□□□□□ -0.6
VEGFA-212ENST00000480614 SETD1BQ9UPS6 1966 aaKnown RBP11.27□□□□□ -0.6
VEGFA-212ENST00000480614 TTC39AQ5SRH9 613 aa11.27□□□□□ -0.61
VEGFA-212ENST00000480614 GOLGA4Q13439 2230 aaKnown RBP11.27□□□□□ -0.61
VEGFA-212ENST00000480614 ANKRD50Q9ULJ7 1429 aa11.27□□□□□ -0.61
VEGFA-212ENST00000480614 SAMD1Q6SPF0 538 aaPredicted RBP11.27□□□□□ -0.61
VEGFA-212ENST00000480614 ERICH3Q5RHP9 1530 aa11.27□□□□□ -0.61
VEGFA-212ENST00000480614 CFAP45Q9UL16 551 aa11.27□□□□□ -0.61
VEGFA-212ENST00000480614 HFM1A2PYH4 1435 aa11.27□□□□□ -0.61
VEGFA-212ENST00000480614 AIMP1Q12904 312 aaKnown RBP11.27□□□□□ -0.61
VEGFA-212ENST00000480614 PDE3AQ14432 1141 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 CCDC181Q5TID7 509 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 TNMDQ9H2S6 317 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 KRT85P78386 507 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 KRT32Q14532 448 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 CYP46A1Q9Y6A2 500 aa11.26□□□□□ -0.61
VEGFA-212ENST00000480614 SOGA3Q5TF21 947 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms