RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	USP19	O94966	1318 aa		7.12	□□□□□ -1.27
HDAC6-223	ENST00000480525	SRPK2	P78362	688 aa	Known RBP	7.12	□□□□□ -1.27
HDAC6-223	ENST00000480525	TERF2IP	Q9NYB0	399 aa		7.12	□□□□□ -1.27
HDAC6-223	ENST00000480525	KIF20B	Q96Q89	1820 aa		7.12	□□□□□ -1.27
HDAC6-223	ENST00000480525	DISP3	Q9P2K9	1392 aa		7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	ACE	P12821	1306 aa		7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	FOXO3	O43524	673 aa		7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	SAFB2	Q14151	953 aa	Known RBP eCLIP	7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	KRT28	Q7Z3Y7	464 aa		7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	HIRIP3	Q9BW71	556 aa	Predicted RBP	7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	SENP3	Q9H4L4	574 aa	Predicted RBP	7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	CDK12	Q9NYV4	1490 aa	Predicted RBP	7.11	□□□□□ -1.27
HDAC6-223	ENST00000480525	NSD2	O96028	1365 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	KIF24	Q5T7B8	1368 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	NPC1L1	Q9UHC9	1359 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	LMO7	Q8WWI1	1683 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	FAM208A	Q9UK61	1670 aa	Known RBP	7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	SCAF1	Q9H7N4	1312 aa	Known RBP	7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	LRP6	O75581	1613 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	NGDN	Q8NEJ9	315 aa	Known RBP	7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	SLIT2	O94813	1529 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	OVOS2	A0A0J9YW53	1432 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	OVOS2	Q6IE36	1432 aa		7.1	□□□□□ -1.27
HDAC6-223	ENST00000480525	PLCH1	Q4KWH8	1693 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525		A0A1W2PP64	1363 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	KTN1	Q86UP2	1357 aa	Known RBP	7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	PLEKHG2	Q9H7P9	1386 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	CABP2	Q9NPB3	220 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	CABP1	Q9NZU7	370 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	NRAP	Q86VF7	1730 aa		7.09	□□□□□ -1.27
HDAC6-223	ENST00000480525	COL18A1	P39060	1754 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	WASHC2A	Q641Q2	1341 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	NFAT5	O94916	1531 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	HSPA5	P11021	654 aa	Known RBP	7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	NLRP13	Q86W25	1043 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	FNBP4	Q8N3X1	1017 aa	Predicted RBP	7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	KCNH5	Q8NCM2	988 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	LTN1	O94822	1766 aa		7.08	□□□□□ -1.28
HDAC6-223	ENST00000480525	TTC21B	Q7Z4L5	1316 aa		7.07	□□□□□ -1.28
HDAC6-223	ENST00000480525	RTL1	A6NKG5	1358 aa		7.07	□□□□□ -1.28
HDAC6-223	ENST00000480525	ZNF772	Q68DY9	489 aa	Predicted RBP	7.06	□□□□□ -1.28
HDAC6-223	ENST00000480525	PMFBP1	Q8TBY8	1022 aa		7.06	□□□□□ -1.28
HDAC6-223	ENST00000480525	AATK	Q6ZMQ8	1374 aa		7.06	□□□□□ -1.28
HDAC6-223	ENST00000480525	BCL9L	Q86UU0	1499 aa		7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	BLM	P54132	1417 aa	Predicted RBP	7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	SMG6	Q86US8	1419 aa	Known RBP	7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	NUTM2F	A1L443	756 aa		7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	SLC12A5	Q9H2X9	1139 aa		7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	CCDC7	Q96M83	1385 aa		7.05	□□□□□ -1.28
HDAC6-223	ENST00000480525	CGNL1	Q0VF96	1302 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	KIF7	Q2M1P5	1343 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	MAP2	P11137	1827 aa	Known RBP	7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	WNK3	Q9BYP7	1800 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	ATRN	O75882	1429 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	CAMTA1	Q9Y6Y1	1673 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	ABTB2	Q8N961	1025 aa		7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	DDX17	Q92841	729 aa	Known RBP	7.04	□□□□□ -1.28
HDAC6-223	ENST00000480525	GC	P02774	474 aa		7.03	□□□□□ -1.28
HDAC6-223	ENST00000480525	THSD7A	Q9UPZ6	1657 aa		7.03	□□□□□ -1.28
HDAC6-223	ENST00000480525	PARP4	Q9UKK3	1724 aa	Known RBP	7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	FYB1	O15117	783 aa		7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	PER1	O15534	1290 aa	Predicted RBP	7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	ONECUT3	O60422	494 aa	Predicted RBP	7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	NLRP6	P59044	892 aa		7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	ARHGEF25	Q86VW2	580 aa		7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	COL5A2	P05997	1499 aa	Predicted RBP	7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	RGPD5	Q99666	1765 aa		7.02	□□□□□ -1.29
HDAC6-223	ENST00000480525	NCAPD2	Q15021	1401 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	NSD3	Q9BZ95	1437 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	KIAA0232	Q92628	1395 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	VPS72	Q15906	364 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	UNC5CL	Q8IV45	518 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	TMC1	Q8TDI8	760 aa		7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	TRPC5	Q9UL62	973 aa	Predicted RBP	7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	THRAP3	Q9Y2W1	955 aa	Known RBP	7.01	□□□□□ -1.29
HDAC6-223	ENST00000480525	GLI3	P10071	1580 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	INSR	P06213	1382 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	C11orf95	C9JLR9	678 aa	Predicted RBP	7	□□□□□ -1.29
HDAC6-223	ENST00000480525	PAK3	O75914	559 aa	Predicted RBP	7	□□□□□ -1.29
HDAC6-223	ENST00000480525	XPC	Q01831	940 aa	Predicted RBP	7	□□□□□ -1.29
HDAC6-223	ENST00000480525	NGLY1	Q96IV0	654 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	COG3	Q96JB2	828 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	CARD14	Q9BXL6	1004 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	RGS17	Q9UGC6	210 aa	Predicted RBP	7	□□□□□ -1.29
HDAC6-223	ENST00000480525	BCL9	O00512	1426 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	CRB1	P82279	1406 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	AFF2	P51816	1311 aa		7	□□□□□ -1.29
HDAC6-223	ENST00000480525	FLT4	P35916	1363 aa		6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	RBM6	P78332	1123 aa	Known RBP	6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	AMER1	Q5JTC6	1135 aa	Predicted RBP	6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	MEX3C	Q5U5Q3	659 aa	Known RBP	6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	BARGIN	Q6ZT62	677 aa		6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	CDCA7	Q9BWT1	371 aa	Predicted RBP	6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	PRDM11	Q9NQV5	511 aa		6.99	□□□□□ -1.29
HDAC6-223	ENST00000480525	FAM83G	A6ND36	823 aa		6.98	□□□□□ -1.29
HDAC6-223	ENST00000480525	HAP1	P54257	671 aa	Predicted RBP	6.98	□□□□□ -1.29
HDAC6-223	ENST00000480525	PHF23	Q9BUL5	403 aa	Predicted RBP	6.98	□□□□□ -1.29
HDAC6-223	ENST00000480525	PANK3	Q9H999	370 aa		6.98	□□□□□ -1.29
HDAC6-223	ENST00000480525	USP21	Q9UK80	565 aa		6.98	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms