RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 ANKRD50Q9ULJ7 1429 aa14.88□□□□□ -0.03
PTPRE-208ENST00000479896 KDM4AO75164 1064 aa14.88□□□□□ -0.03
PTPRE-208ENST00000479896 RBM5P52756 815 aaKnown RBP eCLIP14.88□□□□□ -0.03
PTPRE-208ENST00000479896 NACAP1Q9BZK3 213 aa14.88□□□□□ -0.03
PTPRE-208ENST00000479896 DDX54Q8TDD1 881 aaKnown RBP14.87□□□□□ -0.03
PTPRE-208ENST00000479896 MNS1Q8NEH6 495 aa14.87□□□□□ -0.03
PTPRE-208ENST00000479896 PDILTQ8N807 584 aa14.87□□□□□ -0.03
PTPRE-208ENST00000479896 POGZQ7Z3K3 1410 aa14.87□□□□□ -0.03
PTPRE-208ENST00000479896 SDF4Q9BRK5 362 aa14.86□□□□□ -0.03
PTPRE-208ENST00000479896 CNTLNQ9NXG0 1405 aa14.86□□□□□ -0.03
PTPRE-208ENST00000479896 PIP4K2AP48426 406 aaPredicted RBP14.86□□□□□ -0.03
PTPRE-208ENST00000479896 ANKLE2Q86XL3 938 aa14.86□□□□□ -0.03
PTPRE-208ENST00000479896 CAGE1Q8TC20 777 aa14.86□□□□□ -0.03
PTPRE-208ENST00000479896 ZNF692Q9BU19 519 aaPredicted RBP14.86□□□□□ -0.03
PTPRE-208ENST00000479896 ARGLU1Q9NWB6 273 aaPredicted RBP14.86□□□□□ -0.03
PTPRE-208ENST00000479896 SYNJ2O15056 1496 aa14.86□□□□□ -0.03
PTPRE-208ENST00000479896 PRAM1Q96QH2 718 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 FGD6Q6ZV73 1430 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 ZSCAN25Q6NSZ9 544 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 C22orf23Q9BZE7 217 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 RAD54L2Q9Y4B4 1467 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 MTHFSP49914 203 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 PIP4K2BP78356 416 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 SCAPERQ9BY12 1400 aa14.85□□□□□ -0.03
PTPRE-208ENST00000479896 ZNF396Q96N95 335 aaPredicted RBP14.85□□□□□ -0.03
PTPRE-208ENST00000479896 FILIP1LQ4L180 1135 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 PRKAR2BP31323 418 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 MPHOSPH8Q99549 860 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 GNAI2P04899 355 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 SMARCE1Q969G3 411 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 TSHZ2Q9NRE2 1034 aa14.84□□□□□ -0.03
PTPRE-208ENST00000479896 GSE1Q14687 1217 aa14.83□□□□□ -0.03
PTPRE-208ENST00000479896 IFT57Q9NWB7 429 aa14.83□□□□□ -0.03
PTPRE-208ENST00000479896 KIF7Q2M1P5 1343 aa14.83□□□□□ -0.03
PTPRE-208ENST00000479896 ZNF644Q9H582 1327 aaPredicted RBP14.83□□□□□ -0.03
PTPRE-208ENST00000479896 SOGA3Q5TF21 947 aa14.83□□□□□ -0.04
PTPRE-208ENST00000479896 ATP2B1P20020 1258 aa14.83□□□□□ -0.04
PTPRE-208ENST00000479896 MPHOSPH10O00566 681 aaKnown RBP14.83□□□□□ -0.04
PTPRE-208ENST00000479896 LETM1O95202 739 aaPredicted RBP14.83□□□□□ -0.04
PTPRE-208ENST00000479896 ZNF530Q6P9A1 599 aaPredicted RBP14.83□□□□□ -0.04
PTPRE-208ENST00000479896 TWISTNBQ3B726 338 aaPredicted RBP14.82□□□□□ -0.04
PTPRE-208ENST00000479896 AQRO60306 1485 aaKnown RBP eCLIP14.82□□□□□ -0.04
PTPRE-208ENST00000479896 HDGFL1Q5TGJ6 251 aa14.82□□□□□ -0.04
PTPRE-208ENST00000479896 PANK1Q8TE04 598 aa14.82□□□□□ -0.04
PTPRE-208ENST00000479896 PRDM11Q9NQV5 511 aa14.82□□□□□ -0.04
PTPRE-208ENST00000479896 CCDC69A6NI79 296 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 PDCP20941 246 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 TRIM22Q8IYM9 498 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 CCDC7Q96M83 1385 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 CCDC57Q2TAC2 916 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 AFAP1Q8N556 730 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 KINO60870 393 aaKnown RBP14.81□□□□□ -0.04
PTPRE-208ENST00000479896 CCT4P50991 539 aaKnown RBP14.81□□□□□ -0.04
PTPRE-208ENST00000479896 CDK19Q9BWU1 502 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 PDCL3Q9H2J4 239 aa14.81□□□□□ -0.04
PTPRE-208ENST00000479896 HSP90B2PQ58FF3 399 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 CFAP70Q5T0N1 1121 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 IGF1RP08069 1367 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 GRIN2BQ13224 1484 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 PLEKHH2Q8IVE3 1493 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 ZNF771Q7L3S4 317 aaPredicted RBP14.8□□□□□ -0.04
PTPRE-208ENST00000479896 ZSCAN29Q8IWY8 852 aaPredicted RBP14.8□□□□□ -0.04
PTPRE-208ENST00000479896 JMYQ8N9B5 988 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 PRG4Q92954 1404 aaPredicted RBP14.8□□□□□ -0.04
PTPRE-208ENST00000479896 MCM2P49736 904 aa14.8□□□□□ -0.04
PTPRE-208ENST00000479896 ERCC4Q92889 916 aaPredicted RBP14.79□□□□□ -0.04
PTPRE-208ENST00000479896 TCP11L2Q8N4U5 519 aa14.79□□□□□ -0.04
PTPRE-208ENST00000479896 TMOD2Q9NZR1 351 aa14.79□□□□□ -0.04
PTPRE-208ENST00000479896 DCTN1Q14203 1278 aa14.79□□□□□ -0.04
PTPRE-208ENST00000479896 STK38Q15208 465 aa14.79□□□□□ -0.04
PTPRE-208ENST00000479896 HSP90AA2PQ14568 343 aaPredicted RBP14.78□□□□□ -0.04
PTPRE-208ENST00000479896 RTEL1-TNFRSF6BF6WH68 1400 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 STIM1Q13586 685 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 SRCIN1Q9C0H9 1055 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 BRD4O60885 1362 aaPredicted RBP14.78□□□□□ -0.04
PTPRE-208ENST00000479896 CCP110O43303 1012 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 SLC4A2P04920 1241 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 GCC1Q96CN9 775 aa14.78□□□□□ -0.04
PTPRE-208ENST00000479896 WDHD1O75717 1129 aaPredicted RBP14.77□□□□□ -0.04
PTPRE-208ENST00000479896 MYL6BP14649 208 aa14.77□□□□□ -0.04
PTPRE-208ENST00000479896 ANKRD1Q15327 319 aa14.77□□□□□ -0.04
PTPRE-208ENST00000479896 SULT6B1Q6IMI4 303 aa14.77□□□□□ -0.04
PTPRE-208ENST00000479896 SMC2O95347 1197 aa14.77□□□□□ -0.05
PTPRE-208ENST00000479896 NOL7Q9UMY1 257 aaKnown RBP14.77□□□□□ -0.05
PTPRE-208ENST00000479896 RSPH6AQ9H0K4 717 aa14.77□□□□□ -0.05
PTPRE-208ENST00000479896 SLC52A1Q9NWF4 448 aa14.77□□□□□ -0.05
PTPRE-208ENST00000479896 IGHMBP2P38935 993 aaKnown RBP14.77□□□□□ -0.05
PTPRE-208ENST00000479896 TTLL5Q6EMB2 1281 aa14.76□□□□□ -0.05
PTPRE-208ENST00000479896 ZNHIT6Q9NWK9 470 aaKnown RBP14.76□□□□□ -0.05
PTPRE-208ENST00000479896 DACH1Q9UI36 760 aa14.76□□□□□ -0.05
PTPRE-208ENST00000479896 EXOSC9Q06265 439 aaKnown RBP14.76□□□□□ -0.05
PTPRE-208ENST00000479896 ZHX3Q9H4I2 956 aa14.76□□□□□ -0.05
PTPRE-208ENST00000479896 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.76□□□□□ -0.05
PTPRE-208ENST00000479896 LUC7LQ9NQ29 371 aaKnown RBP14.76□□□□□ -0.05
PTPRE-208ENST00000479896 DESP17661 470 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 TXLNBQ8N3L3 684 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 SIL1Q9H173 461 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 NCOA2Q15596 1464 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 STK11IPQ8N1F8 1099 aa14.75□□□□□ -0.05
PTPRE-208ENST00000479896 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms