RNA–Protein interactions for RNA: ENST00000479511.1

GAPVD1-217, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 3

Gene GAPVD1, Length 575 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-217ENST00000479511 SKIP12755 728 aa12□□□□□ -0.49
GAPVD1-217ENST00000479511 PUS10Q3MIT2 529 aaKnown RBP12□□□□□ -0.49
GAPVD1-217ENST00000479511 DEPDC4Q8N2C3 294 aa12□□□□□ -0.49
GAPVD1-217ENST00000479511 KCNH8Q96L42 1107 aa12□□□□□ -0.49
GAPVD1-217ENST00000479511 HS3ST6Q96QI5 342 aa12□□□□□ -0.49
GAPVD1-217ENST00000479511 PLEKHM2Q8IWE5 1019 aa11.99□□□□□ -0.49
GAPVD1-217ENST00000479511 CCER1Q8TC90 406 aaPredicted RBP11.99□□□□□ -0.49
GAPVD1-217ENST00000479511 SLC4A3P48751 1232 aa11.98□□□□□ -0.49
GAPVD1-217ENST00000479511 CRTC2Q53ET0 693 aaPredicted RBP11.98□□□□□ -0.49
GAPVD1-217ENST00000479511 POTEEQ6S8J3 1075 aa11.98□□□□□ -0.49
GAPVD1-217ENST00000479511 SSFA2P28290 1259 aa11.97□□□□□ -0.49
GAPVD1-217ENST00000479511 DMRTA1Q5VZB9 504 aa11.97□□□□□ -0.49
GAPVD1-217ENST00000479511 FKBPLQ9UIM3 349 aa11.97□□□□□ -0.49
GAPVD1-217ENST00000479511 RBM47A0AV96 593 aaKnown RBP11.96□□□□□ -0.49
GAPVD1-217ENST00000479511 RNF40O75150 1001 aa11.96□□□□□ -0.49
GAPVD1-217ENST00000479511 SLC4A5Q9BY07 1137 aa11.96□□□□□ -0.49
GAPVD1-217ENST00000479511 FAM196BA6NMK8 535 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L15C9J2P7 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L10C9JJH3 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L13C9JLJ4 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L12C9JPN9 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L11C9JVI0 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L21D6R901 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L18D6R9N7 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L22D6RA61 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L17D6RBQ6 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L19D6RCP7 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L20D6RJB6 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 FAM69CQ0P6D2 419 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 USP17L24Q0WX57 530 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 RNF19BQ6ZMZ0 732 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 MYT1LQ9UL68 1186 aa11.95□□□□□ -0.5
GAPVD1-217ENST00000479511 POTEB3A0JP26 581 aa11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 F12P00748 615 aaPredicted RBP11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 Q3C1V9 767 aa11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 KMT5BQ4FZB7 885 aa11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 NOM1Q5C9Z4 860 aaKnown RBP11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 BLOC1S3Q6QNY0 202 aa11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 POTEBQ6S5H4 581 aa11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 DNAJC14Q6Y2X3 702 aaPredicted RBP11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 MKRN1Q9UHC7 482 aaKnown RBP11.94□□□□□ -0.5
GAPVD1-217ENST00000479511 ERBB3P21860 1342 aa11.93□□□□□ -0.5
GAPVD1-217ENST00000479511 PTK7Q13308 1070 aa11.93□□□□□ -0.5
GAPVD1-217ENST00000479511 MAP10Q9P2G4 905 aa11.93□□□□□ -0.5
GAPVD1-217ENST00000479511 ACTN4O43707 911 aaKnown RBP11.92□□□□□ -0.5
GAPVD1-217ENST00000479511 ARID4AP29374 1257 aaPredicted RBP11.92□□□□□ -0.5
GAPVD1-217ENST00000479511 ARHGAP33O14559 1287 aa11.91□□□□□ -0.5
GAPVD1-217ENST00000479511 IGSF5Q9NSI5 407 aa11.91□□□□□ -0.5
GAPVD1-217ENST00000479511 AXIN2Q9Y2T1 843 aa11.91□□□□□ -0.5
GAPVD1-217ENST00000479511 NCOA4Q13772 614 aa11.9□□□□□ -0.5
GAPVD1-217ENST00000479511 CLP1Q92989 425 aaKnown RBP11.9□□□□□ -0.5
GAPVD1-217ENST00000479511 VPS9D1Q9Y2B5 631 aa11.9□□□□□ -0.5
GAPVD1-217ENST00000479511 SHROOM4Q9ULL8 1493 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 SOWAHDA6NJG2 315 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 RASA1P20936 1047 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 SCNN1AP37088 669 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 PHTF2Q8N3S3 785 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 FAM200AQ8TCP9 573 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 USB1Q9BQ65 265 aaKnown RBP11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 KIAA1522Q9P206 1035 aaPredicted RBP11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 CEP126Q9P2H0 1117 aa11.89□□□□□ -0.51
GAPVD1-217ENST00000479511 ZC3H4Q9UPT8 1303 aaKnown RBP11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 SERPINB4P48594 390 aa11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 LARP1Q6PKG0 1096 aaKnown RBP11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 BRICD5Q6PL45 260 aa11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 LAPTM4BQ86VI4 370 aa11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 CDCA7Q9BWT1 371 aaPredicted RBP11.88□□□□□ -0.51
GAPVD1-217ENST00000479511 SPNS2Q8IVW8 549 aa11.87□□□□□ -0.51
GAPVD1-217ENST00000479511 OCSTAMPQ9BR26 566 aa11.87□□□□□ -0.51
GAPVD1-217ENST00000479511 ATP2B4P23634 1241 aa11.86□□□□□ -0.51
GAPVD1-217ENST00000479511 KCNH2Q12809 1159 aa11.86□□□□□ -0.51
GAPVD1-217ENST00000479511 ANKMY2Q8IV38 441 aa11.86□□□□□ -0.51
GAPVD1-217ENST00000479511 ZFRQ96KR1 1074 aaKnown RBP11.86□□□□□ -0.51
GAPVD1-217ENST00000479511 VARS2Q5ST30 1063 aaKnown RBP11.85□□□□□ -0.51
GAPVD1-217ENST00000479511 PLPP7Q8NBV4 271 aa11.85□□□□□ -0.51
GAPVD1-217ENST00000479511 KRTAP3-3Q9BYR6 98 aa11.85□□□□□ -0.51
GAPVD1-217ENST00000479511 KRTAP3-2Q9BYR7 98 aa11.85□□□□□ -0.51
GAPVD1-217ENST00000479511 ATP5J2-PTCD1G3V325 749 aa11.84□□□□□ -0.51
GAPVD1-217ENST00000479511 SLFNL1Q499Z3 407 aa11.84□□□□□ -0.51
GAPVD1-217ENST00000479511 RNF135Q8IUD6 432 aa11.84□□□□□ -0.51
GAPVD1-217ENST00000479511 JUNDP17535 347 aa11.83□□□□□ -0.52
GAPVD1-217ENST00000479511 DPYDQ12882 1025 aa11.83□□□□□ -0.52
GAPVD1-217ENST00000479511 PTPRNQ16849 979 aa11.83□□□□□ -0.52
GAPVD1-217ENST00000479511 PCDHB9Q9Y5E1 797 aa11.83□□□□□ -0.52
GAPVD1-217ENST00000479511 BHMG1C9JSJ3 638 aaPredicted RBP11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 ZNF16P17020 682 aaPredicted RBP11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 ERCC3P19447 782 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 CTHP32929 405 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 MMRN1Q13201 1228 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 TSGA10IPQ3SY00 556 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 MRRFQ96E11 262 aaKnown RBP11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 THAP11Q96EK4 314 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 CHIC2Q9UKJ5 165 aa11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 SALL2Q9Y467 1007 aaPredicted RBP11.82□□□□□ -0.52
GAPVD1-217ENST00000479511 CLDN10P78369 228 aa11.81□□□□□ -0.52
GAPVD1-217ENST00000479511 OGFOD1Q8N543 542 aa11.81□□□□□ -0.52
GAPVD1-217ENST00000479511 USP35Q9P2H5 1018 aa11.81□□□□□ -0.52
GAPVD1-217ENST00000479511 ZNF594Q96JF6 807 aaPredicted RBP11.8□□□□□ -0.52
GAPVD1-217ENST00000479511 MARSP56192 900 aaKnown RBP11.79□□□□□ -0.52
GAPVD1-217ENST00000479511 PTK2Q05397 1052 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms