RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 UNC5CLQ8IV45 518 aa16.04■□□□□ 0.16
PTPRN-213ENST00000476930 GLI3P10071 1580 aa16.04■□□□□ 0.16
PTPRN-213ENST00000476930 ACEP12821 1306 aa16.03■□□□□ 0.16
PTPRN-213ENST00000476930 GJD4Q96KN9 370 aaPredicted RBP16.03■□□□□ 0.16
PTPRN-213ENST00000476930 CCDC61Q9Y6R9 512 aa16.03■□□□□ 0.16
PTPRN-213ENST00000476930 NRAPQ86VF7 1730 aa16.02■□□□□ 0.16
PTPRN-213ENST00000476930 FAM83GA6ND36 823 aa16.02■□□□□ 0.16
PTPRN-213ENST00000476930 SRPK2P78362 688 aaKnown RBP16.02■□□□□ 0.16
PTPRN-213ENST00000476930 CABP2Q9NPB3 220 aa16.02■□□□□ 0.16
PTPRN-213ENST00000476930 POLR3AO14802 1390 aaPredicted RBP16.01■□□□□ 0.15
PTPRN-213ENST00000476930 ROCK2O75116 1388 aaKnown RBP16.01■□□□□ 0.15
PTPRN-213ENST00000476930 PHRF1Q9P1Y6 1649 aaKnown RBP16.01■□□□□ 0.15
PTPRN-213ENST00000476930 PLEKHG3A1L390 1219 aa16.01■□□□□ 0.15
PTPRN-213ENST00000476930 RALGAPBQ86X10 1494 aa16.01■□□□□ 0.15
PTPRN-213ENST00000476930 COL14A1Q05707 1796 aaKnown RBP16■□□□□ 0.15
PTPRN-213ENST00000476930 PPIP5K1Q6PFW1 1433 aa16■□□□□ 0.15
PTPRN-213ENST00000476930 NUTM2GQ5VZR2 741 aa15.99■□□□□ 0.15
PTPRN-213ENST00000476930 VPS72Q15906 364 aa15.96■□□□□ 0.15
PTPRN-213ENST00000476930 BTG4Q9NY30 223 aa15.96■□□□□ 0.15
PTPRN-213ENST00000476930 TONSLQ96HA7 1378 aa15.96■□□□□ 0.15
PTPRN-213ENST00000476930 AKAP12Q02952 1782 aa15.95■□□□□ 0.14
PTPRN-213ENST00000476930 CABP1Q9NZU7 370 aa15.95■□□□□ 0.14
PTPRN-213ENST00000476930 CCDC9Q9Y3X0 531 aaKnown RBP15.95■□□□□ 0.14
PTPRN-213ENST00000476930 ATAD2Q6PL18 1390 aa15.95■□□□□ 0.14
PTPRN-213ENST00000476930 EVC2Q86UK5 1308 aa15.94■□□□□ 0.14
PTPRN-213ENST00000476930 ABTB2Q8N961 1025 aa15.93■□□□□ 0.14
PTPRN-213ENST00000476930 NRKQ7Z2Y5 1582 aa15.92■□□□□ 0.14
PTPRN-213ENST00000476930 KIAA0232Q92628 1395 aa15.92■□□□□ 0.14
PTPRN-213ENST00000476930 ZC3H6P61129 1189 aaKnown RBP15.92■□□□□ 0.14
PTPRN-213ENST00000476930 CHRNA2Q15822 529 aa15.92■□□□□ 0.14
PTPRN-213ENST00000476930 CARD11Q9BXL7 1154 aa15.92■□□□□ 0.14
PTPRN-213ENST00000476930 PRDM11Q9NQV5 511 aa15.92■□□□□ 0.14
PTPRN-213ENST00000476930 SEPT12Q8IYM1 358 aa15.91■□□□□ 0.14
PTPRN-213ENST00000476930 PIK3C2AO00443 1686 aa15.9■□□□□ 0.14
PTPRN-213ENST00000476930 ONECUT3O60422 494 aaPredicted RBP15.9■□□□□ 0.14
PTPRN-213ENST00000476930 USP6P35125 1406 aa15.9■□□□□ 0.14
PTPRN-213ENST00000476930 USP19O94966 1318 aa15.89■□□□□ 0.13
PTPRN-213ENST00000476930 SSH2Q76I76 1423 aa15.88■□□□□ 0.13
PTPRN-213ENST00000476930 SRCAPQ6ZRS2 3230 aa15.88■□□□□ 0.13
PTPRN-213ENST00000476930 FAM98CQ17RN3 349 aaKnown RBP15.88■□□□□ 0.13
PTPRN-213ENST00000476930 LMO7Q8WWI1 1683 aa15.88■□□□□ 0.13
PTPRN-213ENST00000476930 MON2Q7Z3U7 1717 aa15.88■□□□□ 0.13
PTPRN-213ENST00000476930 NLRP13Q86W25 1043 aa15.87■□□□□ 0.13
PTPRN-213ENST00000476930 SPATA31A5Q5VU36 1347 aa15.87■□□□□ 0.13
PTPRN-213ENST00000476930 SPATA31A7Q8IWB4 1347 aa15.87■□□□□ 0.13
PTPRN-213ENST00000476930 RGPD5Q99666 1765 aa15.87■□□□□ 0.13
PTPRN-213ENST00000476930 BRD4O60885 1362 aaPredicted RBP15.87■□□□□ 0.13
PTPRN-213ENST00000476930 SBNO2Q9Y2G9 1366 aa15.87■□□□□ 0.13
PTPRN-213ENST00000476930 CAMTA1Q9Y6Y1 1673 aa15.86■□□□□ 0.13
PTPRN-213ENST00000476930 GCP02774 474 aa15.86■□□□□ 0.13
PTPRN-213ENST00000476930 THSD7AQ9UPZ6 1657 aa15.86■□□□□ 0.13
PTPRN-213ENST00000476930 A0A0G2JS52 829 aa15.85■□□□□ 0.13
PTPRN-213ENST00000476930 NLRP6P59044 892 aa15.85■□□□□ 0.13
PTPRN-213ENST00000476930 MYT1Q01538 1121 aa15.85■□□□□ 0.13
PTPRN-213ENST00000476930 STRN4Q9NRL3 753 aa15.85■□□□□ 0.13
PTPRN-213ENST00000476930 SLIT3O75094 1523 aa15.84■□□□□ 0.13
PTPRN-213ENST00000476930 KRT27Q7Z3Y8 459 aa15.84■□□□□ 0.13
PTPRN-213ENST00000476930 COL18A1P39060 1754 aa15.84■□□□□ 0.13
PTPRN-213ENST00000476930 CPDO75976 1380 aa15.84■□□□□ 0.13
PTPRN-213ENST00000476930 CPSF1Q10570 1443 aaKnown RBP15.84■□□□□ 0.13
PTPRN-213ENST00000476930 ZNF692Q9BU19 519 aaPredicted RBP15.83■□□□□ 0.12
PTPRN-213ENST00000476930 SPATA31A1Q5TZJ5 1347 aa15.83■□□□□ 0.12
PTPRN-213ENST00000476930 TTC21BQ7Z4L5 1316 aa15.83■□□□□ 0.12
PTPRN-213ENST00000476930 CCDC125Q86Z20 511 aa15.82■□□□□ 0.12
PTPRN-213ENST00000476930 ZBTB7CA1YPR0 619 aa15.81■□□□□ 0.12
PTPRN-213ENST00000476930 EVA1CP58658 441 aa15.81■□□□□ 0.12
PTPRN-213ENST00000476930 KTN1Q86UP2 1357 aaKnown RBP15.81■□□□□ 0.12
PTPRN-213ENST00000476930 PCGF6Q9BYE7 350 aa15.81■□□□□ 0.12
PTPRN-213ENST00000476930 CD163L1Q9NR16 1453 aa15.81■□□□□ 0.12
PTPRN-213ENST00000476930 BLMP54132 1417 aaPredicted RBP15.8■□□□□ 0.12
PTPRN-213ENST00000476930 ST20-MTHFSA0A0A6YYL1 179 aa15.8■□□□□ 0.12
PTPRN-213ENST00000476930 FAM182BQ5T319 152 aa15.8■□□□□ 0.12
PTPRN-213ENST00000476930 LARP1Q6PKG0 1096 aaKnown RBP15.8■□□□□ 0.12
PTPRN-213ENST00000476930 USP35Q9P2H5 1018 aa15.8■□□□□ 0.12
PTPRN-213ENST00000476930 TMC1Q8TDI8 760 aa15.79■□□□□ 0.12
PTPRN-213ENST00000476930 TESK2Q96S53 571 aa15.79■□□□□ 0.12
PTPRN-213ENST00000476930 SLC12A5Q9H2X9 1139 aa15.79■□□□□ 0.12
PTPRN-213ENST00000476930 COL5A2P05997 1499 aaPredicted RBP15.78■□□□□ 0.12
PTPRN-213ENST00000476930 TTC21AQ8NDW8 1320 aa15.78■□□□□ 0.12
PTPRN-213ENST00000476930 DEFB132Q7Z7B7 95 aa15.78■□□□□ 0.12
PTPRN-213ENST00000476930 ZRANB1Q9UGI0 708 aa15.78■□□□□ 0.12
PTPRN-213ENST00000476930 RGPD1P0DJD0 1748 aa15.77■□□□□ 0.12
PTPRN-213ENST00000476930 USP54Q70EL1 1684 aa15.77■□□□□ 0.12
PTPRN-213ENST00000476930 SOX12O15370 315 aa15.77■□□□□ 0.12
PTPRN-213ENST00000476930 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.77■□□□□ 0.12
PTPRN-213ENST00000476930 LTN1O94822 1766 aa15.77■□□□□ 0.11
PTPRN-213ENST00000476930 AATKQ6ZMQ8 1374 aa15.76■□□□□ 0.11
PTPRN-213ENST00000476930 NFAT5O94916 1531 aa15.76■□□□□ 0.11
PTPRN-213ENST00000476930 WNK3Q9BYP7 1800 aa15.75■□□□□ 0.11
PTPRN-213ENST00000476930 TNS1Q9HBL0 1735 aaKnown RBP15.75■□□□□ 0.11
PTPRN-213ENST00000476930 AXIN2Q9Y2T1 843 aa15.75■□□□□ 0.11
PTPRN-213ENST00000476930 PARP4Q9UKK3 1724 aaKnown RBP15.74■□□□□ 0.11
PTPRN-213ENST00000476930 SF3B2Q13435 895 aaKnown RBP15.74■□□□□ 0.11
PTPRN-213ENST00000476930 BARGINQ6ZT62 677 aa15.74■□□□□ 0.11
PTPRN-213ENST00000476930 ARHGEF25Q86VW2 580 aa15.74■□□□□ 0.11
PTPRN-213ENST00000476930 NME9Q86XW9 330 aa15.74■□□□□ 0.11
PTPRN-213ENST00000476930 TCP11L2Q8N4U5 519 aa15.74■□□□□ 0.11
PTPRN-213ENST00000476930 PUS7Q96PZ0 661 aaKnown RBP15.74■□□□□ 0.11
PTPRN-213ENST00000476930 A0A1W2PP64 1363 aa15.74■□□□□ 0.11
PTPRN-213ENST00000476930 HDGFL2Q7Z4V5 671 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms