RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 TRPM3Q9HCF6 1732 aaPredicted RBP15.46■□□□□ 0.07
SEC13-214ENST00000476597 MARF1Q9Y4F3 1742 aaKnown RBP15.46■□□□□ 0.07
SEC13-214ENST00000476597 SEPT12Q8IYM1 358 aa15.45■□□□□ 0.06
SEC13-214ENST00000476597 CCDC9Q9Y3X0 531 aaKnown RBP15.45■□□□□ 0.06
SEC13-214ENST00000476597 ROCK2O75116 1388 aaKnown RBP15.45■□□□□ 0.06
SEC13-214ENST00000476597 EP400Q96L91 3159 aa15.44■□□□□ 0.06
SEC13-214ENST00000476597 NUTM2GQ5VZR2 741 aa15.44■□□□□ 0.06
SEC13-214ENST00000476597 CABP1Q9NZU7 370 aa15.44■□□□□ 0.06
SEC13-214ENST00000476597 ALS2Q96Q42 1657 aa15.44■□□□□ 0.06
SEC13-214ENST00000476597 EVC2Q86UK5 1308 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 PPIP5K1Q6PFW1 1433 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 CCDC125Q86Z20 511 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 ABTB2Q8N961 1025 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 PRDM11Q9NQV5 511 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 GLI3P10071 1580 aa15.43■□□□□ 0.06
SEC13-214ENST00000476597 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.42■□□□□ 0.06
SEC13-214ENST00000476597 ZC3H6P61129 1189 aaKnown RBP15.41■□□□□ 0.06
SEC13-214ENST00000476597 BRD4O60885 1362 aaPredicted RBP15.4■□□□□ 0.06
SEC13-214ENST00000476597 KIAA0232Q92628 1395 aa15.4■□□□□ 0.06
SEC13-214ENST00000476597 NLRP13Q86W25 1043 aa15.4■□□□□ 0.06
SEC13-214ENST00000476597 CHRNA2Q15822 529 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 FAM98CQ17RN3 349 aaKnown RBP15.39■□□□□ 0.05
SEC13-214ENST00000476597 CARD11Q9BXL7 1154 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 ITSN1Q15811 1721 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 SPATA31A5Q5VU36 1347 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 SPATA31A7Q8IWB4 1347 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 TRPM1Q7Z4N2 1603 aa15.39■□□□□ 0.05
SEC13-214ENST00000476597 TONSLQ96HA7 1378 aa15.38■□□□□ 0.05
SEC13-214ENST00000476597 ABCA3Q99758 1704 aa15.38■□□□□ 0.05
SEC13-214ENST00000476597 KRT27Q7Z3Y8 459 aa15.38■□□□□ 0.05
SEC13-214ENST00000476597 USP19O94966 1318 aa15.38■□□□□ 0.05
SEC13-214ENST00000476597 TOPAZ1Q8N9V7 1692 aa15.38■□□□□ 0.05
SEC13-214ENST00000476597 NWD2Q9ULI1 1742 aa15.37■□□□□ 0.05
SEC13-214ENST00000476597 GCP02774 474 aa15.37■□□□□ 0.05
SEC13-214ENST00000476597 ZNF692Q9BU19 519 aaPredicted RBP15.37■□□□□ 0.05
SEC13-214ENST00000476597 COL14A1Q05707 1796 aaKnown RBP15.36■□□□□ 0.05
SEC13-214ENST00000476597 SRCAPQ6ZRS2 3230 aa15.36■□□□□ 0.05
SEC13-214ENST00000476597 USP6P35125 1406 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 SSH2Q76I76 1423 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 PLCH1Q4KWH8 1693 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 NLRP6P59044 892 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 SPATA31A1Q5TZJ5 1347 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 CPDO75976 1380 aa15.35■□□□□ 0.05
SEC13-214ENST00000476597 A0A0G2JS52 829 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 MYT1Q01538 1121 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 STRN4Q9NRL3 753 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 QRICH2Q9H0J4 1663 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 SBNO2Q9Y2G9 1366 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 CRYBG1Q9Y4K1 1723 aa15.34■□□□□ 0.05
SEC13-214ENST00000476597 EVA1CP58658 441 aa15.33■□□□□ 0.04
SEC13-214ENST00000476597 TTC21BQ7Z4L5 1316 aa15.33■□□□□ 0.04
SEC13-214ENST00000476597 BLMP54132 1417 aaPredicted RBP15.33■□□□□ 0.04
SEC13-214ENST00000476597 NRAPQ86VF7 1730 aa15.31■□□□□ 0.04
SEC13-214ENST00000476597 CPSF1Q10570 1443 aaKnown RBP15.3■□□□□ 0.04
SEC13-214ENST00000476597 LARP1Q6PKG0 1096 aaKnown RBP15.3■□□□□ 0.04
SEC13-214ENST00000476597 BARGINQ6ZT62 677 aa15.3■□□□□ 0.04
SEC13-214ENST00000476597 PUS7Q96PZ0 661 aaKnown RBP15.3■□□□□ 0.04
SEC13-214ENST00000476597 TTC21AQ8NDW8 1320 aa15.29■□□□□ 0.04
SEC13-214ENST00000476597 SF3B2Q13435 895 aaKnown RBP15.29■□□□□ 0.04
SEC13-214ENST00000476597 DEFB132Q7Z7B7 95 aa15.29■□□□□ 0.04
SEC13-214ENST00000476597 ZRANB1Q9UGI0 708 aa15.29■□□□□ 0.04
SEC13-214ENST00000476597 CAMTA1Q9Y6Y1 1673 aa15.28■□□□□ 0.04
SEC13-214ENST00000476597 PHRF1Q9P1Y6 1649 aaKnown RBP15.28■□□□□ 0.04
SEC13-214ENST00000476597 USP35Q9P2H5 1018 aa15.28■□□□□ 0.04
SEC13-214ENST00000476597 NRKQ7Z2Y5 1582 aa15.28■□□□□ 0.04
SEC13-214ENST00000476597 AATKQ6ZMQ8 1374 aa15.27■□□□□ 0.04
SEC13-214ENST00000476597 KTN1Q86UP2 1357 aaKnown RBP15.27■□□□□ 0.04
SEC13-214ENST00000476597 FAM182BQ5T319 152 aa15.27■□□□□ 0.04
SEC13-214ENST00000476597 TCP11L2Q8N4U5 519 aa15.27■□□□□ 0.04
SEC13-214ENST00000476597 KCNH5Q8NCM2 988 aa15.27■□□□□ 0.04
SEC13-214ENST00000476597 SLC12A5Q9H2X9 1139 aa15.27■□□□□ 0.04
SEC13-214ENST00000476597 THRAP3Q9Y2W1 955 aaKnown RBP15.27■□□□□ 0.04
SEC13-214ENST00000476597 ST20-MTHFSA0A0A6YYL1 179 aa15.26■□□□□ 0.03
SEC13-214ENST00000476597 ZBTB7CA1YPR0 619 aa15.26■□□□□ 0.03
SEC13-214ENST00000476597 ARHGEF25Q86VW2 580 aa15.26■□□□□ 0.03
SEC13-214ENST00000476597 TMC1Q8TDI8 760 aa15.26■□□□□ 0.03
SEC13-214ENST00000476597 TESK2Q96S53 571 aa15.26■□□□□ 0.03
SEC13-214ENST00000476597 BRWD3Q6RI45 1802 aa15.25■□□□□ 0.03
SEC13-214ENST00000476597 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
SEC13-214ENST00000476597 AXIN2Q9Y2T1 843 aa15.25■□□□□ 0.03
SEC13-214ENST00000476597 SLIT3O75094 1523 aa15.25■□□□□ 0.03
SEC13-214ENST00000476597 FAM196AQ6ZSG2 479 aa15.24■□□□□ 0.03
SEC13-214ENST00000476597 HDGFL2Q7Z4V5 671 aaPredicted RBP15.24■□□□□ 0.03
SEC13-214ENST00000476597 COL5A2P05997 1499 aaPredicted RBP15.23■□□□□ 0.03
SEC13-214ENST00000476597 BAG6P46379 1132 aa15.23■□□□□ 0.03
SEC13-214ENST00000476597 PDE3BQ13370 1112 aa15.23■□□□□ 0.03
SEC13-214ENST00000476597 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.23■□□□□ 0.03
SEC13-214ENST00000476597 TIMELESSQ9UNS1 1208 aa15.23■□□□□ 0.03
SEC13-214ENST00000476597 LMO7Q8WWI1 1683 aa15.22■□□□□ 0.03
SEC13-214ENST00000476597 THSD7AQ9UPZ6 1657 aa15.22■□□□□ 0.03
SEC13-214ENST00000476597 CD163L1Q9NR16 1453 aa15.22■□□□□ 0.03
SEC13-214ENST00000476597 TERF2IPQ9NYB0 399 aa15.22■□□□□ 0.03
SEC13-214ENST00000476597 USP31Q70CQ4 1352 aa15.22■□□□□ 0.03
SEC13-214ENST00000476597 SOX12O15370 315 aa15.21■□□□□ 0.03
SEC13-214ENST00000476597 NME9Q86XW9 330 aa15.21■□□□□ 0.03
SEC13-214ENST00000476597 CRB1P82279 1406 aa15.2■□□□□ 0.02
SEC13-214ENST00000476597 PIK3C2AO00443 1686 aa15.2■□□□□ 0.02
SEC13-214ENST00000476597 EN1Q05925 392 aaPredicted RBP15.2■□□□□ 0.02
SEC13-214ENST00000476597 TOM1L2Q6ZVM7 507 aa15.2■□□□□ 0.02
SEC13-214ENST00000476597 PCGF6Q9BYE7 350 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms