RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 RBM6P78332 1123 aaKnown RBP30.13■■■□□ 2.41
LIME1-204ENST00000476183 ATRNO75882 1429 aa30.13■■■□□ 2.41
LIME1-204ENST00000476183 CDK12Q9NYV4 1490 aaPredicted RBP30.12■■■□□ 2.41
LIME1-204ENST00000476183 SLIT2O94813 1529 aa30.12■■■□□ 2.41
LIME1-204ENST00000476183 TRPC5Q9UL62 973 aaPredicted RBP30.11■■■□□ 2.41
LIME1-204ENST00000476183 CRYBG1Q9Y4K1 1723 aa30.1■■■□□ 2.41
LIME1-204ENST00000476183 CABP1Q9NZU7 370 aa30.09■■■□□ 2.41
LIME1-204ENST00000476183 RGS12O14924 1447 aa30.07■■■□□ 2.4
LIME1-204ENST00000476183 SBNO2Q9Y2G9 1366 aa30.07■■■□□ 2.4
LIME1-204ENST00000476183 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.06■■■□□ 2.4
LIME1-204ENST00000476183 CLSPNQ9HAW4 1339 aa30.05■■■□□ 2.4
LIME1-204ENST00000476183 UNC5CLQ8IV45 518 aa30.05■■■□□ 2.4
LIME1-204ENST00000476183 FAM83GA6ND36 823 aa30.04■■■□□ 2.4
LIME1-204ENST00000476183 PLCH1Q4KWH8 1693 aa30.04■■■□□ 2.4
LIME1-204ENST00000476183 NUTM2GQ5VZR2 741 aa30.03■■■□□ 2.4
LIME1-204ENST00000476183 NWD2Q9ULI1 1742 aa30■■■□□ 2.39
LIME1-204ENST00000476183 PHRF1Q9P1Y6 1649 aaKnown RBP30■■■□□ 2.39
LIME1-204ENST00000476183 USP6P35125 1406 aa29.99■■■□□ 2.39
LIME1-204ENST00000476183 ABTB2Q8N961 1025 aa29.98■■■□□ 2.39
LIME1-204ENST00000476183 GJD4Q96KN9 370 aaPredicted RBP29.98■■■□□ 2.39
LIME1-204ENST00000476183 ATAD2Q6PL18 1390 aa29.98■■■□□ 2.39
LIME1-204ENST00000476183 TIMELESSQ9UNS1 1208 aa29.96■■■□□ 2.39
LIME1-204ENST00000476183 SSH2Q76I76 1423 aa29.96■■■□□ 2.39
LIME1-204ENST00000476183 COL14A1Q05707 1796 aaKnown RBP29.95■■■□□ 2.39
LIME1-204ENST00000476183 GLI3P10071 1580 aa29.95■■■□□ 2.39
LIME1-204ENST00000476183 BRD4O60885 1362 aaPredicted RBP29.95■■■□□ 2.39
LIME1-204ENST00000476183 ST20-MTHFSA0A0A6YYL1 179 aa29.94■■■□□ 2.38
LIME1-204ENST00000476183 TESK2Q96S53 571 aa29.94■■■□□ 2.38
LIME1-204ENST00000476183 AKAP12Q02952 1782 aa29.94■■■□□ 2.38
LIME1-204ENST00000476183 NRAPQ86VF7 1730 aa29.93■■■□□ 2.38
LIME1-204ENST00000476183 USP19O94966 1318 aa29.93■■■□□ 2.38
LIME1-204ENST00000476183 KIAA0232Q92628 1395 aa29.92■■■□□ 2.38
LIME1-204ENST00000476183 VPS72Q15906 364 aa29.92■■■□□ 2.38
LIME1-204ENST00000476183 BTG4Q9NY30 223 aa29.92■■■□□ 2.38
LIME1-204ENST00000476183 NRKQ7Z2Y5 1582 aa29.91■■■□□ 2.38
LIME1-204ENST00000476183 CPSF1Q10570 1443 aaKnown RBP29.91■■■□□ 2.38
LIME1-204ENST00000476183 CCER1Q8TC90 406 aaPredicted RBP29.91■■■□□ 2.38
LIME1-204ENST00000476183 PRDM11Q9NQV5 511 aa29.91■■■□□ 2.38
LIME1-204ENST00000476183 ZC3H6P61129 1189 aaKnown RBP29.89■■■□□ 2.38
LIME1-204ENST00000476183 UPF1Q92900 1129 aaKnown RBP eCLIP29.89■■■□□ 2.38
LIME1-204ENST00000476183 NLRP13Q86W25 1043 aa29.88■■■□□ 2.37
LIME1-204ENST00000476183 ZNF692Q9BU19 519 aaPredicted RBP29.88■■■□□ 2.37
LIME1-204ENST00000476183 PIK3C2AO00443 1686 aa29.88■■■□□ 2.37
LIME1-204ENST00000476183 CHRNA2Q15822 529 aa29.87■■■□□ 2.37
LIME1-204ENST00000476183 USP47Q96K76 1375 aa29.87■■■□□ 2.37
LIME1-204ENST00000476183 TTC21BQ7Z4L5 1316 aa29.86■■■□□ 2.37
LIME1-204ENST00000476183 CD163L1Q9NR16 1453 aa29.86■■■□□ 2.37
LIME1-204ENST00000476183 GCP02774 474 aa29.84■■■□□ 2.37
LIME1-204ENST00000476183 NLRP6P59044 892 aa29.84■■■□□ 2.37
LIME1-204ENST00000476183 CCDC9Q9Y3X0 531 aaKnown RBP29.84■■■□□ 2.37
LIME1-204ENST00000476183 KTN1Q86UP2 1357 aaKnown RBP29.84■■■□□ 2.37
LIME1-204ENST00000476183 MON2Q7Z3U7 1717 aa29.84■■■□□ 2.37
LIME1-204ENST00000476183 TMC1Q8TDI8 760 aa29.83■■■□□ 2.37
LIME1-204ENST00000476183 PUS7Q96PZ0 661 aaKnown RBP29.83■■■□□ 2.37
LIME1-204ENST00000476183 SLC12A5Q9H2X9 1139 aa29.83■■■□□ 2.37
LIME1-204ENST00000476183 CPDO75976 1380 aa29.82■■■□□ 2.36
LIME1-204ENST00000476183 SLIT3O75094 1523 aa29.81■■■□□ 2.36
LIME1-204ENST00000476183 TTC21AQ8NDW8 1320 aa29.79■■■□□ 2.36
LIME1-204ENST00000476183 EP400Q96L91 3159 aa29.79■■■□□ 2.36
LIME1-204ENST00000476183 ONECUT3O60422 494 aaPredicted RBP29.78■■■□□ 2.36
LIME1-204ENST00000476183 BRWD3Q6RI45 1802 aa29.78■■■□□ 2.36
LIME1-204ENST00000476183 LMO7Q8WWI1 1683 aa29.77■■■□□ 2.36
LIME1-204ENST00000476183 SEPT12Q8IYM1 358 aa29.77■■■□□ 2.36
LIME1-204ENST00000476183 SPATA31A5Q5VU36 1347 aa29.76■■■□□ 2.36
LIME1-204ENST00000476183 SPATA31A7Q8IWB4 1347 aa29.76■■■□□ 2.36
LIME1-204ENST00000476183 CAMTA1Q9Y6Y1 1673 aa29.76■■■□□ 2.36
LIME1-204ENST00000476183 SLC24A1O60721 1099 aa29.75■■■□□ 2.35
LIME1-204ENST00000476183 A0A1W2PP64 1363 aa29.75■■■□□ 2.35
LIME1-204ENST00000476183 HDGFL2Q7Z4V5 671 aaPredicted RBP29.74■■■□□ 2.35
LIME1-204ENST00000476183 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.74■■■□□ 2.35
LIME1-204ENST00000476183 STRN4Q9NRL3 753 aa29.74■■■□□ 2.35
LIME1-204ENST00000476183 FAM98CQ17RN3 349 aaKnown RBP29.73■■■□□ 2.35
LIME1-204ENST00000476183 ZRANB1Q9UGI0 708 aa29.73■■■□□ 2.35
LIME1-204ENST00000476183 TMF1P82094 1093 aa29.71■■■□□ 2.35
LIME1-204ENST00000476183 TERF2IPQ9NYB0 399 aa29.71■■■□□ 2.35
LIME1-204ENST00000476183 NINLQ9Y2I6 1382 aa29.7■■■□□ 2.35
LIME1-204ENST00000476183 NME9Q86XW9 330 aa29.7■■■□□ 2.35
LIME1-204ENST00000476183 EDC4Q6P2E9 1401 aaKnown RBP29.7■■■□□ 2.34
LIME1-204ENST00000476183 SPATA31A1Q5TZJ5 1347 aa29.7■■■□□ 2.34
LIME1-204ENST00000476183 ZBTB7CA1YPR0 619 aa29.69■■■□□ 2.34
LIME1-204ENST00000476183 USP31Q70CQ4 1352 aa29.68■■■□□ 2.34
LIME1-204ENST00000476183 COL18A1P39060 1754 aa29.67■■■□□ 2.34
LIME1-204ENST00000476183 USP54Q70EL1 1684 aa29.67■■■□□ 2.34
LIME1-204ENST00000476183 SOX12O15370 315 aa29.67■■■□□ 2.34
LIME1-204ENST00000476183 EVA1CP58658 441 aa29.67■■■□□ 2.34
LIME1-204ENST00000476183 NFAT5O94916 1531 aa29.66■■■□□ 2.34
LIME1-204ENST00000476183 AATKQ6ZMQ8 1374 aa29.66■■■□□ 2.34
LIME1-204ENST00000476183 LARP1Q6PKG0 1096 aaKnown RBP29.66■■■□□ 2.34
LIME1-204ENST00000476183 COL5A2P05997 1499 aaPredicted RBP29.66■■■□□ 2.34
LIME1-204ENST00000476183 A0A0G2JS52 829 aa29.65■■■□□ 2.34
LIME1-204ENST00000476183 MYT1Q01538 1121 aa29.65■■■□□ 2.34
LIME1-204ENST00000476183 ARHGEF25Q86VW2 580 aa29.65■■■□□ 2.34
LIME1-204ENST00000476183 KCNH5Q8NCM2 988 aa29.65■■■□□ 2.34
LIME1-204ENST00000476183 THSD7AQ9UPZ6 1657 aa29.65■■■□□ 2.34
LIME1-204ENST00000476183 KRT27Q7Z3Y8 459 aa29.63■■■□□ 2.33
LIME1-204ENST00000476183 USP35Q9P2H5 1018 aa29.62■■■□□ 2.33
LIME1-204ENST00000476183 AXIN2Q9Y2T1 843 aa29.62■■■□□ 2.33
LIME1-204ENST00000476183 ANKRD36BQ8N2N9 1353 aa29.61■■■□□ 2.33
LIME1-204ENST00000476183 OVOS2A0A0J9YW53 1432 aa29.58■■■□□ 2.33
LIME1-204ENST00000476183 CDCA8Q53HL2 280 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms