RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CRYBG1Q9Y4K1 1723 aa7.68□□□□□ -1.18
USP4-209ENST00000475873 SPATA31A1Q5TZJ5 1347 aa7.68□□□□□ -1.18
USP4-209ENST00000475873 PLEKHH1Q9ULM0 1364 aa7.68□□□□□ -1.18
USP4-209ENST00000475873 TECPR2O15040 1411 aa7.68□□□□□ -1.18
USP4-209ENST00000475873 CLTCL1P53675 1640 aa7.67□□□□□ -1.18
USP4-209ENST00000475873 RGPD3A6NKT7 1758 aaPredicted RBP7.67□□□□□ -1.18
USP4-209ENST00000475873 RGPD4Q7Z3J3 1758 aa7.67□□□□□ -1.18
USP4-209ENST00000475873 ZNF326Q5BKZ1 582 aaKnown RBP7.67□□□□□ -1.18
USP4-209ENST00000475873 POTEDQ86YR6 584 aa7.67□□□□□ -1.18
USP4-209ENST00000475873 SBNO1A3KN83 1393 aa7.67□□□□□ -1.18
USP4-209ENST00000475873 PEAK1Q9H792 1746 aa7.66□□□□□ -1.18
USP4-209ENST00000475873 TRPM3Q9HCF6 1732 aaPredicted RBP7.66□□□□□ -1.18
USP4-209ENST00000475873 WAPLQ7Z5K2 1190 aa7.66□□□□□ -1.18
USP4-209ENST00000475873 MAP3K5Q99683 1374 aa7.66□□□□□ -1.18
USP4-209ENST00000475873 ALS2Q96Q42 1657 aa7.66□□□□□ -1.18
USP4-209ENST00000475873 ARHGEF10O15013 1369 aa7.65□□□□□ -1.18
USP4-209ENST00000475873 SBF2Q86WG5 1849 aa7.65□□□□□ -1.18
USP4-209ENST00000475873 DNAJC5GQ8N7S2 189 aa7.65□□□□□ -1.18
USP4-209ENST00000475873 ATP10DQ9P241 1426 aa7.65□□□□□ -1.18
USP4-209ENST00000475873 NRXN1Q9ULB1 1477 aa7.65□□□□□ -1.18
USP4-209ENST00000475873 PRELPP51888 382 aa7.64□□□□□ -1.19
USP4-209ENST00000475873 LMOD2Q6P5Q4 547 aa7.64□□□□□ -1.19
USP4-209ENST00000475873 GPR162Q16538 588 aa7.63□□□□□ -1.19
USP4-209ENST00000475873 PHF8Q9UPP1 1060 aa7.63□□□□□ -1.19
USP4-209ENST00000475873 IFT172Q9UG01 1749 aa7.62□□□□□ -1.19
USP4-209ENST00000475873 PLSCR1O15162 318 aa7.62□□□□□ -1.19
USP4-209ENST00000475873 YBX3P16989 372 aaKnown RBP eCLIP7.62□□□□□ -1.19
USP4-209ENST00000475873 ARXQ96QS3 562 aa7.62□□□□□ -1.19
USP4-209ENST00000475873 VPS8Q8N3P4 1428 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 ADCY9O60503 1353 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 CHRNA2Q15822 529 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 BARGINQ6ZT62 677 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 MTFR1LQ9H019 292 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 USP35Q9P2H5 1018 aa7.61□□□□□ -1.19
USP4-209ENST00000475873 NUP155O75694 1391 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 KIAA0232Q92628 1395 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 PSME1Q06323 249 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 PDE3BQ13370 1112 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 NLGN2Q8NFZ4 835 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 BCL11BQ9C0K0 894 aaPredicted RBP7.6□□□□□ -1.19
USP4-209ENST00000475873 PRDM11Q9NQV5 511 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 STRN4Q9NRL3 753 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 PARP4Q9UKK3 1724 aaKnown RBP7.6□□□□□ -1.19
USP4-209ENST00000475873 SSH2Q76I76 1423 aa7.6□□□□□ -1.19
USP4-209ENST00000475873 PPLO60437 1756 aa7.59□□□□□ -1.19
USP4-209ENST00000475873 KNDC1Q76NI1 1749 aa7.59□□□□□ -1.19
USP4-209ENST00000475873 SLC15A2Q16348 729 aa7.59□□□□□ -1.19
USP4-209ENST00000475873 STK26Q9P289 416 aa7.59□□□□□ -1.19
USP4-209ENST00000475873 PAPPAQ13219 1627 aa7.59□□□□□ -1.19
USP4-209ENST00000475873 KIF1BO60333 1816 aa7.58□□□□□ -1.2
USP4-209ENST00000475873 LARP1Q6PKG0 1096 aaKnown RBP7.58□□□□□ -1.2
USP4-209ENST00000475873 PELP1Q8IZL8 1130 aaKnown RBP7.58□□□□□ -1.2
USP4-209ENST00000475873 TNS4Q8IZW8 715 aa7.58□□□□□ -1.2
USP4-209ENST00000475873 PMFBP1Q8TBY8 1022 aa7.58□□□□□ -1.2
USP4-209ENST00000475873 COL24A1Q17RW2 1714 aa7.58□□□□□ -1.2
USP4-209ENST00000475873 ABCC11Q96J66 1382 aa7.58□□□□□ -1.2
USP4-209ENST00000475873 LMO7Q8WWI1 1683 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 ATP7BP35670 1465 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 LRRC37A3O60309 1634 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 PHRF1Q9P1Y6 1649 aaKnown RBP7.57□□□□□ -1.2
USP4-209ENST00000475873 KIF3CO14782 793 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 VGFO15240 615 aaPredicted RBP7.57□□□□□ -1.2
USP4-209ENST00000475873 ZNF526Q8TF50 670 aaPredicted RBP7.57□□□□□ -1.2
USP4-209ENST00000475873 GPBP1L1Q9HC44 474 aaPredicted RBP7.57□□□□□ -1.2
USP4-209ENST00000475873 OVOS2A0A0G2JMS6 1433 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 OVOS2A0A0J9YW53 1432 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 OVOS2Q6IE36 1432 aa7.57□□□□□ -1.2
USP4-209ENST00000475873 ADGRF5Q8IZF2 1346 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 HTRA3P83110 453 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 TXNRD1Q16881 649 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 TMEM132EQ6IEE7 984 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 STK32BQ9NY57 414 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 PCDH10Q9P2E7 1040 aa7.56□□□□□ -1.2
USP4-209ENST00000475873 APLP1P51693 650 aa7.55□□□□□ -1.2
USP4-209ENST00000475873 TCP11L2Q8N4U5 519 aa7.55□□□□□ -1.2
USP4-209ENST00000475873 JMYQ8N9B5 988 aa7.55□□□□□ -1.2
USP4-209ENST00000475873 PRR36Q9H6K5 1346 aa7.54□□□□□ -1.2
USP4-209ENST00000475873 ACIN1Q9UKV3 1341 aaKnown RBP7.54□□□□□ -1.2
USP4-209ENST00000475873 ZC3H6P61129 1189 aaKnown RBP7.54□□□□□ -1.2
USP4-209ENST00000475873 ZNF827Q17R98 1081 aa7.54□□□□□ -1.2
USP4-209ENST00000475873 WDR90Q96KV7 1748 aa7.54□□□□□ -1.2
USP4-209ENST00000475873 YTHDC2Q9H6S0 1430 aaKnown RBP7.53□□□□□ -1.2
USP4-209ENST00000475873 KLHL34Q8N239 644 aa7.53□□□□□ -1.2
USP4-209ENST00000475873 MARCH10Q8NA82 808 aaPredicted RBP7.53□□□□□ -1.2
USP4-209ENST00000475873 AATKQ6ZMQ8 1374 aa7.53□□□□□ -1.2
USP4-209ENST00000475873 BCL9O00512 1426 aa7.52□□□□□ -1.2
USP4-209ENST00000475873 ANKARQ7Z5J8 1434 aa7.52□□□□□ -1.2
USP4-209ENST00000475873 TOPAZ1Q8N9V7 1692 aa7.52□□□□□ -1.21
USP4-209ENST00000475873 DHX57Q6P158 1386 aaKnown RBP7.52□□□□□ -1.21
USP4-209ENST00000475873 FAM50AQ14320 339 aaKnown RBP7.52□□□□□ -1.21
USP4-209ENST00000475873 TUBGCP6Q96RT7 1819 aa7.52□□□□□ -1.21
USP4-209ENST00000475873 RPGRIP1LQ68CZ1 1315 aa7.52□□□□□ -1.21
USP4-209ENST00000475873 COL5A2P05997 1499 aaPredicted RBP7.51□□□□□ -1.21
USP4-209ENST00000475873 ROCK1Q13464 1354 aa7.51□□□□□ -1.21
USP4-209ENST00000475873 KLRG1Q96E93 195 aa7.51□□□□□ -1.21
USP4-209ENST00000475873 WNK3Q9BYP7 1800 aa7.5□□□□□ -1.21
USP4-209ENST00000475873 GRIN3BO60391 1043 aa7.5□□□□□ -1.21
USP4-209ENST00000475873 SAFB2Q14151 953 aaKnown RBP eCLIP7.5□□□□□ -1.21
USP4-209ENST00000475873 NUTM2GQ5VZR2 741 aa7.5□□□□□ -1.21
USP4-209ENST00000475873 LRRC4BQ9NT99 713 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms