RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 CAVIN1Q6NZI2 390 aaKnown RBP13.15□□□□□ -0.3
VAPB-204ENST00000475243 NAT10Q9H0A0 1025 aaKnown RBP13.15□□□□□ -0.3
VAPB-204ENST00000475243 TSR2Q969E8 191 aaKnown RBP13.15□□□□□ -0.3
VAPB-204ENST00000475243 CNTLNQ9NXG0 1405 aa13.15□□□□□ -0.3
VAPB-204ENST00000475243 EXOSC9Q06265 439 aaKnown RBP13.15□□□□□ -0.3
VAPB-204ENST00000475243 CAGE1Q8TC20 777 aa13.15□□□□□ -0.3
VAPB-204ENST00000475243 STK3Q13188 491 aa13.15□□□□□ -0.31
VAPB-204ENST00000475243 SART3Q15020 963 aaKnown RBP13.15□□□□□ -0.31
VAPB-204ENST00000475243 TTC39AQ5SRH9 613 aa13.15□□□□□ -0.31
VAPB-204ENST00000475243 NASPP49321 788 aaPredicted RBP13.14□□□□□ -0.31
VAPB-204ENST00000475243 NFKBIBQ15653 356 aa13.14□□□□□ -0.31
VAPB-204ENST00000475243 FAM43AQ8N2R8 423 aa13.14□□□□□ -0.31
VAPB-204ENST00000475243 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
VAPB-204ENST00000475243 GPRASP1Q5JY77 1395 aa13.14□□□□□ -0.31
VAPB-204ENST00000475243 SMC2O95347 1197 aa13.14□□□□□ -0.31
VAPB-204ENST00000475243 CCAR1Q8IX12 1150 aaKnown RBP13.14□□□□□ -0.31
VAPB-204ENST00000475243 AK7Q96M32 723 aa13.13□□□□□ -0.31
VAPB-204ENST00000475243 PLEKHO1Q53GL0 409 aaPredicted RBP13.13□□□□□ -0.31
VAPB-204ENST00000475243 CDK5RAP3Q96JB5 506 aa13.13□□□□□ -0.31
VAPB-204ENST00000475243 TRIM5Q9C035 493 aa13.13□□□□□ -0.31
VAPB-204ENST00000475243 SLC4A2P04920 1241 aa13.13□□□□□ -0.31
VAPB-204ENST00000475243 TWISTNBQ3B726 338 aaPredicted RBP13.13□□□□□ -0.31
VAPB-204ENST00000475243 GAS2L2Q8NHY3 880 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 PROSER2Q86WR7 435 aaPredicted RBP13.12□□□□□ -0.31
VAPB-204ENST00000475243 PRPF40AO75400 957 aaKnown RBP13.12□□□□□ -0.31
VAPB-204ENST00000475243 SULT6B1Q6IMI4 303 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 GNAI3P08754 354 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 FGD6Q6ZV73 1430 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 WASHC2AQ641Q2 1341 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 GNAI2P04899 355 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 SPC24Q8NBT2 197 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 FANCIQ9NVI1 1328 aa13.12□□□□□ -0.31
VAPB-204ENST00000475243 KINO60870 393 aaKnown RBP13.11□□□□□ -0.31
VAPB-204ENST00000475243 CUX1P39880 1505 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 FIBPO43427 364 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 BCAR3O75815 825 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 CABP4P57796 275 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 ANKRD50Q9ULJ7 1429 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 PDZRN3Q9UPQ7 1066 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.11□□□□□ -0.31
VAPB-204ENST00000475243 TOM1L2Q6ZVM7 507 aa13.11□□□□□ -0.31
VAPB-204ENST00000475243 PPP2R1AP30153 589 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 HDGFL1Q5TGJ6 251 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 TRAK2O60296 914 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 NBPF1Q3BBV0 1214 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 CDK19Q9BWU1 502 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 SLC3A2P08195 630 aaKnown RBP13.1□□□□□ -0.31
VAPB-204ENST00000475243 CCDC158Q5M9N0 1113 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 ZHX3Q9H4I2 956 aa13.1□□□□□ -0.31
VAPB-204ENST00000475243 KRT18P05783 430 aaKnown RBP13.1□□□□□ -0.31
VAPB-204ENST00000475243 AQRO60306 1485 aaKnown RBP eCLIP13.1□□□□□ -0.311e-6■■■■□ 26.3
VAPB-204ENST00000475243 SPINK5Q9NQ38 1064 aaPredicted RBP13.1□□□□□ -0.31
VAPB-204ENST00000475243 TATP17735 454 aaPredicted RBP13.09□□□□□ -0.31
VAPB-204ENST00000475243 MPNDQ8N594 471 aa13.09□□□□□ -0.31
VAPB-204ENST00000475243 FKBP4Q02790 459 aaKnown RBP eCLIP13.09□□□□□ -0.31
VAPB-204ENST00000475243 RBM5P52756 815 aaKnown RBP eCLIP13.09□□□□□ -0.31
VAPB-204ENST00000475243 PAF1Q8N7H5 531 aa13.09□□□□□ -0.31
VAPB-204ENST00000475243 CCDC173Q0VFZ6 552 aa13.09□□□□□ -0.31
VAPB-204ENST00000475243 ARGLU1Q9NWB6 273 aaPredicted RBP13.09□□□□□ -0.31
VAPB-204ENST00000475243 SMG6Q86US8 1419 aaKnown RBP13.09□□□□□ -0.31
VAPB-204ENST00000475243 MAGEC2Q9UBF1 373 aaPredicted RBP13.09□□□□□ -0.31
VAPB-204ENST00000475243 HSP90B2PQ58FF3 399 aa13.08□□□□□ -0.32
VAPB-204ENST00000475243 CABP1Q9NZU7 370 aa13.08□□□□□ -0.32
VAPB-204ENST00000475243 XPCQ01831 940 aaPredicted RBP13.08□□□□□ -0.32
VAPB-204ENST00000475243 TXLNAP40222 546 aa13.08□□□□□ -0.32
VAPB-204ENST00000475243 RRBP1Q9P2E9 1410 aaKnown RBP13.07□□□□□ -0.32
VAPB-204ENST00000475243 NUP133Q8WUM0 1156 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 WWC2Q6AWC2 1192 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 PIP4K2BP78356 416 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 PIBF1Q8WXW3 757 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 STK38Q15208 465 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 CCDC85AQ96PX6 553 aaPredicted RBP13.07□□□□□ -0.32
VAPB-204ENST00000475243 CCDC39Q9UFE4 941 aa13.07□□□□□ -0.32
VAPB-204ENST00000475243 BRD4O60885 1362 aaPredicted RBP13.06□□□□□ -0.32
VAPB-204ENST00000475243 RRS1Q15050 365 aaKnown RBP13.06□□□□□ -0.32
VAPB-204ENST00000475243 FILIP1LQ4L180 1135 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 HIP1O00291 1037 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 CDR1P51861 262 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 IGF1RP08069 1367 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 MPHOSPH8Q99549 860 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 TSPY26PQ9H489 355 aa13.06□□□□□ -0.32
VAPB-204ENST00000475243 LRRC9Q6ZRR7 1453 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 SYCP1Q15431 976 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 ERC1Q8IUD2 1116 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 ACBD3Q9H3P7 528 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 GNL3LQ9NVN8 582 aaKnown RBP13.05□□□□□ -0.32
VAPB-204ENST00000475243 CCDC57Q2TAC2 916 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 LRRCC1Q9C099 1032 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 FYCO1Q9BQS8 1478 aa13.05□□□□□ -0.32
VAPB-204ENST00000475243 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.05□□□□□ -0.32
VAPB-204ENST00000475243 ZNF530Q6P9A1 599 aaPredicted RBP13.05□□□□□ -0.32
VAPB-204ENST00000475243 CCDC69A6NI79 296 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 PDCP20941 246 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 DCAF8L1A6NGE4 600 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 ZNF396Q96N95 335 aaPredicted RBP13.04□□□□□ -0.32
VAPB-204ENST00000475243 SLC26A8Q96RN1 970 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 FAM177A1Q8N128 213 aaPredicted RBP13.04□□□□□ -0.32
VAPB-204ENST00000475243 NCOA2Q15596 1464 aa13.04□□□□□ -0.32
VAPB-204ENST00000475243 SERPINC1P01008 464 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms