RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SPATA31A1Q5TZJ5 1347 aa12.5□□□□□ -0.41
USP54-211ENST00000474929 KNDC1Q76NI1 1749 aa12.5□□□□□ -0.41
USP54-211ENST00000474929 SLC34A2O95436 690 aa12.49□□□□□ -0.41
USP54-211ENST00000474929 KANK4Q5T7N3 995 aaPredicted RBP12.49□□□□□ -0.41
USP54-211ENST00000474929 MTFR1LQ9H019 292 aa12.49□□□□□ -0.41
USP54-211ENST00000474929 PHF8Q9UPP1 1060 aa12.49□□□□□ -0.41
USP54-211ENST00000474929 CLTCL1P53675 1640 aa12.48□□□□□ -0.41
USP54-211ENST00000474929 NUP155O75694 1391 aa12.48□□□□□ -0.41
USP54-211ENST00000474929 PLSCR1O15162 318 aa12.48□□□□□ -0.41
USP54-211ENST00000474929 GPR162Q16538 588 aa12.48□□□□□ -0.41
USP54-211ENST00000474929 IFT172Q9UG01 1749 aa12.48□□□□□ -0.41
USP54-211ENST00000474929 RPGRIP1LQ68CZ1 1315 aa12.47□□□□□ -0.41
USP54-211ENST00000474929 NUTM2FA1L443 756 aa12.47□□□□□ -0.41
USP54-211ENST00000474929 ZBTB7AO95365 584 aa12.47□□□□□ -0.41
USP54-211ENST00000474929 BARGINQ6ZT62 677 aa12.47□□□□□ -0.41
USP54-211ENST00000474929 PCDH10Q9P2E7 1040 aa12.47□□□□□ -0.41
USP54-211ENST00000474929 OVOS2A0A0G2JMS6 1433 aa12.46□□□□□ -0.41
USP54-211ENST00000474929 OVOS2A0A0J9YW53 1432 aa12.46□□□□□ -0.41
USP54-211ENST00000474929 OVOS2Q6IE36 1432 aa12.46□□□□□ -0.41
USP54-211ENST00000474929 PRDM11Q9NQV5 511 aa12.46□□□□□ -0.41
USP54-211ENST00000474929 ALS2Q96Q42 1657 aa12.45□□□□□ -0.42
USP54-211ENST00000474929 ROCK1Q13464 1354 aa12.44□□□□□ -0.42
USP54-211ENST00000474929 PLEKHG5O94827 1062 aa12.44□□□□□ -0.42
USP54-211ENST00000474929 ARXQ96QS3 562 aa12.44□□□□□ -0.42
USP54-211ENST00000474929 BCL11BQ9C0K0 894 aaPredicted RBP12.44□□□□□ -0.42
USP54-211ENST00000474929 ANO8Q9HCE9 1232 aaPredicted RBP12.44□□□□□ -0.42
USP54-211ENST00000474929 STK32BQ9NY57 414 aa12.44□□□□□ -0.42
USP54-211ENST00000474929 ANKARQ7Z5J8 1434 aa12.44□□□□□ -0.42
USP54-211ENST00000474929 DHX57Q6P158 1386 aaKnown RBP12.43□□□□□ -0.42
USP54-211ENST00000474929 TRPM3Q9HCF6 1732 aaPredicted RBP12.43□□□□□ -0.42
USP54-211ENST00000474929 PARP4Q9UKK3 1724 aaKnown RBP12.43□□□□□ -0.42
USP54-211ENST00000474929 PRELPP51888 382 aa12.43□□□□□ -0.42
USP54-211ENST00000474929 GPRASP1Q5JY77 1395 aa12.43□□□□□ -0.42
USP54-211ENST00000474929 ABCC11Q96J66 1382 aa12.43□□□□□ -0.42
USP54-211ENST00000474929 CRYBG1Q9Y4K1 1723 aa12.42□□□□□ -0.42
USP54-211ENST00000474929 GRIN3BO60391 1043 aa12.42□□□□□ -0.42
USP54-211ENST00000474929 GPBP1L1Q9HC44 474 aaPredicted RBP12.42□□□□□ -0.42
USP54-211ENST00000474929 ATF5Q9Y2D1 282 aaPredicted RBP12.42□□□□□ -0.42
USP54-211ENST00000474929 THRAP3Q9Y2W1 955 aaKnown RBP12.42□□□□□ -0.42
USP54-211ENST00000474929 PPLO60437 1756 aa12.42□□□□□ -0.42
USP54-211ENST00000474929 APLP2Q06481 763 aa12.41□□□□□ -0.42
USP54-211ENST00000474929 SGIP1Q9BQI5 828 aa12.41□□□□□ -0.42
USP54-211ENST00000474929 SSH2Q76I76 1423 aa12.4□□□□□ -0.42
USP54-211ENST00000474929 ATP10DQ9P241 1426 aa12.4□□□□□ -0.42
USP54-211ENST00000474929 APLP1P51693 650 aa12.4□□□□□ -0.42
USP54-211ENST00000474929 EIF3AQ14152 1382 aaKnown RBP12.4□□□□□ -0.42
USP54-211ENST00000474929 AATKQ6ZMQ8 1374 aa12.4□□□□□ -0.42
USP54-211ENST00000474929 RGPD8O14715 1765 aaPredicted RBP12.39□□□□□ -0.43
USP54-211ENST00000474929 TCP11L2Q8N4U5 519 aa12.39□□□□□ -0.43
USP54-211ENST00000474929 PEAK1Q9H792 1746 aa12.38□□□□□ -0.43
USP54-211ENST00000474929 SLC15A2Q16348 729 aa12.38□□□□□ -0.43
USP54-211ENST00000474929 STRN4Q9NRL3 753 aa12.38□□□□□ -0.43
USP54-211ENST00000474929 CAPN15O75808 1086 aa12.37□□□□□ -0.43
USP54-211ENST00000474929 WAPLQ7Z5K2 1190 aa12.37□□□□□ -0.43
USP54-211ENST00000474929 TNS4Q8IZW8 715 aa12.37□□□□□ -0.43
USP54-211ENST00000474929 SBF2Q86WG5 1849 aa12.37□□□□□ -0.43
USP54-211ENST00000474929 ATP7BP35670 1465 aa12.36□□□□□ -0.43
USP54-211ENST00000474929 KIAA0232Q92628 1395 aa12.36□□□□□ -0.43
USP54-211ENST00000474929 FAM50AQ14320 339 aaKnown RBP12.36□□□□□ -0.43
USP54-211ENST00000474929 SIRT1Q96EB6 747 aa12.36□□□□□ -0.43
USP54-211ENST00000474929 USP35Q9P2H5 1018 aa12.36□□□□□ -0.43
USP54-211ENST00000474929 PHRF1Q9P1Y6 1649 aaKnown RBP12.36□□□□□ -0.43
USP54-211ENST00000474929 BCL9O00512 1426 aa12.36□□□□□ -0.43
USP54-211ENST00000474929 EVA1CP58658 441 aa12.35□□□□□ -0.43
USP54-211ENST00000474929 PELP1Q8IZL8 1130 aaKnown RBP12.35□□□□□ -0.43
USP54-211ENST00000474929 PDGFDQ9GZP0 370 aaPredicted RBP12.35□□□□□ -0.43
USP54-211ENST00000474929 TOPAZ1Q8N9V7 1692 aa12.35□□□□□ -0.43
USP54-211ENST00000474929 PLEKHH1Q9ULM0 1364 aa12.34□□□□□ -0.43
USP54-211ENST00000474929 POLD1P28340 1107 aa12.34□□□□□ -0.43
USP54-211ENST00000474929 STK26Q9P289 416 aa12.34□□□□□ -0.43
USP54-211ENST00000474929 YTHDC2Q9H6S0 1430 aaKnown RBP12.33□□□□□ -0.44
USP54-211ENST00000474929 ACIN1Q9UKV3 1341 aaKnown RBP12.33□□□□□ -0.44
USP54-211ENST00000474929 LRRC37A3O60309 1634 aa12.33□□□□□ -0.44
USP54-211ENST00000474929 ANKRD30BQ9BXX2 1392 aa12.32□□□□□ -0.44
USP54-211ENST00000474929 ADCY9O60503 1353 aa12.31□□□□□ -0.44
USP54-211ENST00000474929 GOLGB1Q14789 3259 aaKnown RBP12.31□□□□□ -0.44
USP54-211ENST00000474929 TXNRD1Q16881 649 aa12.31□□□□□ -0.44
USP54-211ENST00000474929 SLC16A10Q8TF71 515 aa12.31□□□□□ -0.44
USP54-211ENST00000474929 COL13A1Q5TAT6 717 aaPredicted RBP12.3□□□□□ -0.44
USP54-211ENST00000474929 AKAP12Q02952 1782 aa12.3□□□□□ -0.44
USP54-211ENST00000474929 LMO7Q8WWI1 1683 aa12.29□□□□□ -0.44
USP54-211ENST00000474929 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
USP54-211ENST00000474929 PMFBP1Q8TBY8 1022 aa12.29□□□□□ -0.44
USP54-211ENST00000474929 PAPPAQ13219 1627 aa12.29□□□□□ -0.44
USP54-211ENST00000474929 CRB1P82279 1406 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 TULP4Q9NRJ4 1543 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 CHRNA2Q15822 529 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 DDB1Q16531 1140 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 CPDO75976 1380 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 COL24A1Q17RW2 1714 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 QSER1Q2KHR3 1735 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 PIK3C2GO75747 1445 aa12.28□□□□□ -0.44
USP54-211ENST00000474929 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
USP54-211ENST00000474929 LARP1Q6PKG0 1096 aaKnown RBP12.27□□□□□ -0.45
USP54-211ENST00000474929 PROM2Q8N271 834 aa12.27□□□□□ -0.45
USP54-211ENST00000474929 CDCA7Q9BWT1 371 aaPredicted RBP12.27□□□□□ -0.45
USP54-211ENST00000474929 ITSN1Q15811 1721 aa12.26□□□□□ -0.45
USP54-211ENST00000474929 WDR90Q96KV7 1748 aa12.26□□□□□ -0.45
USP54-211ENST00000474929 JMYQ8N9B5 988 aa12.26□□□□□ -0.45
USP54-211ENST00000474929 BRD4O60885 1362 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms