RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 POGKQ9P215 609 aa9.93□□□□□ -0.82
LIMD1-204ENST00000474665 RGPD8O14715 1765 aaPredicted RBP9.93□□□□□ -0.82
LIMD1-204ENST00000474665 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.93□□□□□ -0.82
LIMD1-204ENST00000474665 MARF1Q9Y4F3 1742 aaKnown RBP9.93□□□□□ -0.82
LIMD1-204ENST00000474665 CDC42BPGQ6DT37 1551 aa9.92□□□□□ -0.82
LIMD1-204ENST00000474665 USP47Q96K76 1375 aa9.92□□□□□ -0.82
LIMD1-204ENST00000474665 MINK1Q8N4C8 1332 aaPredicted RBP9.92□□□□□ -0.82
LIMD1-204ENST00000474665 CENPJQ9HC77 1338 aaPredicted RBP9.92□□□□□ -0.82
LIMD1-204ENST00000474665 GIGYF1O75420 1035 aaPredicted RBP9.92□□□□□ -0.82
LIMD1-204ENST00000474665 FMN2Q9NZ56 1722 aa9.92□□□□□ -0.82
LIMD1-204ENST00000474665 USP32Q8NFA0 1604 aa9.92□□□□□ -0.82
LIMD1-204ENST00000474665 ST20-MTHFSA0A0A6YYL1 179 aa9.91□□□□□ -0.82
LIMD1-204ENST00000474665 FAM98CQ17RN3 349 aaKnown RBP9.91□□□□□ -0.82
LIMD1-204ENST00000474665 TULP4Q9NRJ4 1543 aa9.91□□□□□ -0.82
LIMD1-204ENST00000474665 PRR36Q9H6K5 1346 aa9.9□□□□□ -0.82
LIMD1-204ENST00000474665 DISP2A7MBM2 1401 aa9.9□□□□□ -0.83
LIMD1-204ENST00000474665 SBNO2Q9Y2G9 1366 aa9.89□□□□□ -0.83
LIMD1-204ENST00000474665 WASLO00401 505 aaPredicted RBP9.89□□□□□ -0.83
LIMD1-204ENST00000474665 TRIM37O94972 964 aa9.89□□□□□ -0.83
LIMD1-204ENST00000474665 CEP350Q5VT06 3117 aa9.89□□□□□ -0.83
LIMD1-204ENST00000474665 RGPD1P0DJD0 1748 aa9.89□□□□□ -0.83
LIMD1-204ENST00000474665 NUTM2FA1L443 756 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 FOXO3O43524 673 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 CAPN15O75808 1086 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 PLEKHG5O94827 1062 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 APBA3O96018 575 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 HSPA5P11021 654 aaKnown RBP9.88□□□□□ -0.83
LIMD1-204ENST00000474665 ESCO1Q5FWF5 840 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 NBPF14Q5TI25 921 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 CDK19Q9BWU1 502 aa9.88□□□□□ -0.83
LIMD1-204ENST00000474665 EIF3AQ14152 1382 aaKnown RBP9.88□□□□□ -0.83
LIMD1-204ENST00000474665 NPHP3Q7Z494 1330 aa9.87□□□□□ -0.83
LIMD1-204ENST00000474665 ATP7BP35670 1465 aa9.87□□□□□ -0.83
LIMD1-204ENST00000474665 PXDNQ92626 1479 aa9.86□□□□□ -0.83
LIMD1-204ENST00000474665 CABP2Q9NPB3 220 aa9.86□□□□□ -0.83
LIMD1-204ENST00000474665 TNS1Q9HBL0 1735 aaKnown RBP9.85□□□□□ -0.83
LIMD1-204ENST00000474665 ANKARQ7Z5J8 1434 aa9.85□□□□□ -0.83
LIMD1-204ENST00000474665 C11orf95C9JLR9 678 aaPredicted RBP9.85□□□□□ -0.83
LIMD1-204ENST00000474665 EIF4G2P78344 907 aaKnown RBP eCLIP9.85□□□□□ -0.83
LIMD1-204ENST00000474665 CABLES1Q8TDN4 633 aa9.85□□□□□ -0.83
LIMD1-204ENST00000474665 NUDT16Q96DE0 195 aaKnown RBP9.85□□□□□ -0.83
LIMD1-204ENST00000474665 TOPAZ1Q8N9V7 1692 aa9.85□□□□□ -0.83
LIMD1-204ENST00000474665 HAP1P54257 671 aaPredicted RBP9.84□□□□□ -0.83
LIMD1-204ENST00000474665 EVC2Q86UK5 1308 aa9.83□□□□□ -0.84
LIMD1-204ENST00000474665 SYT17Q9BSW7 474 aa9.83□□□□□ -0.84
LIMD1-204ENST00000474665 UTRNP46939 3433 aa9.82□□□□□ -0.84
LIMD1-204ENST00000474665 FAM83GA6ND36 823 aa9.82□□□□□ -0.84
LIMD1-204ENST00000474665 SRPK2P78362 688 aaKnown RBP9.82□□□□□ -0.84
LIMD1-204ENST00000474665 PDGFDQ9GZP0 370 aaPredicted RBP9.82□□□□□ -0.84
LIMD1-204ENST00000474665 SPATA31A3Q5VYP0 1347 aa9.82□□□□□ -0.84
LIMD1-204ENST00000474665 PARD3Q8TEW0 1356 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 PLEKHG3A1L390 1219 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 ZBTB7AO95365 584 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 PMFBP1Q8TBY8 1022 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 FHDC1Q9C0D6 1143 aaPredicted RBP9.81□□□□□ -0.84
LIMD1-204ENST00000474665 PHF8Q9UPP1 1060 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 CCDC61Q9Y6R9 512 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 CHD4Q14839 1912 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 ITSN1Q15811 1721 aa9.81□□□□□ -0.84
LIMD1-204ENST00000474665 KIF1AQ12756 1690 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 NRKQ7Z2Y5 1582 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 CD163L1Q9NR16 1453 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 POLR3AO14802 1390 aaPredicted RBP9.8□□□□□ -0.84
LIMD1-204ENST00000474665 NUP188Q5SRE5 1749 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 SLC34A2O95436 690 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 ZEB1P37275 1124 aaPredicted RBP9.8□□□□□ -0.84
LIMD1-204ENST00000474665 PTGER2P43116 358 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 FAM196AQ6ZSG2 479 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 PUS7Q96PZ0 661 aaKnown RBP9.8□□□□□ -0.84
LIMD1-204ENST00000474665 CABP1Q9NZU7 370 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 ATF5Q9Y2D1 282 aaPredicted RBP9.8□□□□□ -0.84
LIMD1-204ENST00000474665 PPIP5K1Q6PFW1 1433 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 PLCH1Q4KWH8 1693 aa9.8□□□□□ -0.84
LIMD1-204ENST00000474665 TMF1P82094 1093 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 SLC12A5Q9H2X9 1139 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 BTG4Q9NY30 223 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 MYOM1P52179 1685 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 RREB1Q92766 1687 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 ACEP12821 1306 aa9.79□□□□□ -0.84
LIMD1-204ENST00000474665 TRPM3Q9HCF6 1732 aaPredicted RBP9.79□□□□□ -0.84
LIMD1-204ENST00000474665 AKAP12Q02952 1782 aa9.78□□□□□ -0.84
LIMD1-204ENST00000474665 CPSF1Q10570 1443 aaKnown RBP9.78□□□□□ -0.84
LIMD1-204ENST00000474665 NWD2Q9ULI1 1742 aa9.77□□□□□ -0.85
LIMD1-204ENST00000474665 SSH2Q76I76 1423 aa9.77□□□□□ -0.85
LIMD1-204ENST00000474665 HSPA6P17066 643 aa9.77□□□□□ -0.85
LIMD1-204ENST00000474665 COL13A1Q5TAT6 717 aaPredicted RBP9.77□□□□□ -0.85
LIMD1-204ENST00000474665 KRT28Q7Z3Y7 464 aa9.77□□□□□ -0.85
LIMD1-204ENST00000474665 KIF7Q2M1P5 1343 aa9.77□□□□□ -0.85
LIMD1-204ENST00000474665 SLC24A1O60721 1099 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 LMOD2Q6P5Q4 547 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 ANO8Q9HCE9 1232 aaPredicted RBP9.76□□□□□ -0.85
LIMD1-204ENST00000474665 SPATA31A5Q5VU36 1347 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 WASHC2AQ641Q2 1341 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 SPATA31A7Q8IWB4 1347 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 MON2Q7Z3U7 1717 aa9.76□□□□□ -0.85
LIMD1-204ENST00000474665 ALS2Q96Q42 1657 aa9.75□□□□□ -0.85
LIMD1-204ENST00000474665 GPR162Q16538 588 aa9.75□□□□□ -0.85
LIMD1-204ENST00000474665 NGDNQ8NEJ9 315 aaKnown RBP9.75□□□□□ -0.85
LIMD1-204ENST00000474665 A0A1W2PP64 1363 aa9.75□□□□□ -0.85
LIMD1-204ENST00000474665 CCDC7Q96M83 1385 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms