RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 RRAGDQ9NQL2 400 aaPredicted RBP4.36□□□□□ -1.71
UBR3-208ENST00000474426 PLSCR2Q9NRY7 297 aa4.36□□□□□ -1.71
UBR3-208ENST00000474426 ATF5Q9Y2D1 282 aaPredicted RBP4.36□□□□□ -1.71
UBR3-208ENST00000474426 HMGB1P1B2RPK0 211 aaPredicted RBP4.35□□□□□ -1.71
UBR3-208ENST00000474426 GIGYF1O75420 1035 aaPredicted RBP4.35□□□□□ -1.71
UBR3-208ENST00000474426 LRRC27Q9C0I9 530 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 MS4A1P11836 297 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 DUSP27Q5VZP5 1158 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 AGBL1Q96MI9 1066 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 FAM210AQ96ND0 272 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 CAPN15O75808 1086 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 FAM163BP0C2L3 166 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 FLT3P36888 993 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 EGFLAMQ63HQ2 1017 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 PROM2Q8N271 834 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 SPACA7Q96KW9 195 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 MUC3BQ9H195 1237 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 CXorf56Q9H5V9 222 aa4.35□□□□□ -1.71
UBR3-208ENST00000474426 PPP1R12AO14974 1030 aaPredicted RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 MFSD4BQ5TF39 518 aa4.34□□□□□ -1.71
UBR3-208ENST00000474426 PROSER2Q86WR7 435 aaPredicted RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 PNISRQ8TF01 805 aaKnown RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 ZNF512BQ96KM6 892 aaPredicted RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 PRR12Q9ULL5 1215 aa4.34□□□□□ -1.71
UBR3-208ENST00000474426 DIS3Q9Y2L1 958 aaKnown RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 CCDC172P0C7W6 258 aa4.34□□□□□ -1.71
UBR3-208ENST00000474426 RSPH9Q9H1X1 276 aaPredicted RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 RBM28Q9NW13 759 aaKnown RBP4.34□□□□□ -1.71
UBR3-208ENST00000474426 SWAP70Q9UH65 585 aa4.34□□□□□ -1.71
UBR3-208ENST00000474426 MPHOSPH10O00566 681 aaKnown RBP4.34□□□□□ -1.72
UBR3-208ENST00000474426 INHBEP58166 350 aa4.34□□□□□ -1.72
UBR3-208ENST00000474426 HDLBPQ00341 1268 aaKnown RBP4.34□□□□□ -1.72
UBR3-208ENST00000474426 POU5F1Q01860 360 aaKnown RBP4.34□□□□□ -1.72
UBR3-208ENST00000474426 NLGN1Q8N2Q7 840 aa4.34□□□□□ -1.72
UBR3-208ENST00000474426 SCYL1Q96KG9 808 aa4.34□□□□□ -1.72
UBR3-208ENST00000474426 CWC25Q9NXE8 425 aaPredicted RBP4.34□□□□□ -1.72
UBR3-208ENST00000474426 CSB-PGBD3P0DP91 1061 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 IFT88Q13099 833 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 MCM6Q14566 821 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 CCDC146Q8IYE0 955 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 NBPF3Q9H094 633 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 WWC3Q9ULE0 1092 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 PAK3O75914 559 aaPredicted RBP4.33□□□□□ -1.72
UBR3-208ENST00000474426 TBX4P57082 545 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 KLHL33A6NCF5 533 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 LETM1O95202 739 aaPredicted RBP4.33□□□□□ -1.72
UBR3-208ENST00000474426 CDC37Q16543 378 aaPredicted RBP4.33□□□□□ -1.72
UBR3-208ENST00000474426 NEUROD6Q96NK8 337 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 SLX1AQ9BQ83 275 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 C22orf23Q9BZE7 217 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 ABCF2Q9UG63 623 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 SUN2Q9UH99 717 aa4.33□□□□□ -1.72
UBR3-208ENST00000474426 CBFA2T2O43439 604 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 RBM5P52756 815 aaKnown RBP eCLIP4.32□□□□□ -1.72
UBR3-208ENST00000474426 TERF1P54274 439 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 E2F5Q15329 346 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 PAIP2Q9BPZ3 127 aaKnown RBP4.32□□□□□ -1.72
UBR3-208ENST00000474426 RETREG1Q9H6L5 497 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 VDRP11473 427 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 ZNF16P17020 682 aaPredicted RBP4.32□□□□□ -1.72
UBR3-208ENST00000474426 LMNB1P20700 586 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 RASSF7Q02833 373 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 NAALADL2Q58DX5 795 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 OGFOD1Q8N543 542 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 KCNB2Q92953 911 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 RPS6KC1Q96S38 1066 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 KIF16BQ96L93 1317 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 SEMA3EO15041 775 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 EIF5P55010 431 aaKnown RBP4.32□□□□□ -1.72
UBR3-208ENST00000474426 SKAP1Q86WV1 359 aa4.32□□□□□ -1.72
UBR3-208ENST00000474426 PES1O00541 588 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 U2AF1L5P0DN76 240 aaPredicted RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 U2AF1Q01081 240 aaKnown RBP eCLIP4.31□□□□□ -1.72
UBR3-208ENST00000474426 PTPROQ16827 1216 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 LONRF1Q17RB8 773 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 LARP1BQ659C4 914 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 PABPN1Q86U42 306 aaKnown RBP eCLIP4.31□□□□□ -1.72
UBR3-208ENST00000474426 LSM14AQ8ND56 463 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 STAG1Q8WVM7 1258 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 GTPBP4Q9BZE4 634 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 TIMM44O43615 452 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 SLC4A2P04920 1241 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 PEX19P40855 299 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 CCDC70Q6NSX1 233 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 RPUSD2Q8IZ73 545 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 PAGR1Q9BTK6 254 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 ZC3H6P61129 1189 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 PDAP1Q13442 181 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 DZIP3Q86Y13 1208 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 TPM2P07951 284 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 ZNF853P0CG23 659 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 PSMC1P62191 440 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 HSP90AB2PQ58FF8 381 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 C16orf87Q6PH81 154 aa4.31□□□□□ -1.72
UBR3-208ENST00000474426 NGDNQ8NEJ9 315 aaKnown RBP4.31□□□□□ -1.72
UBR3-208ENST00000474426 RAD54L2Q9Y4B4 1467 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 hCG_2014768A0A024R1R8 64 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 IPO5O00410 1097 aaKnown RBP4.3□□□□□ -1.72
UBR3-208ENST00000474426 CTAGE5O15320 804 aa4.3□□□□□ -1.72
UBR3-208ENST00000474426 CLCN1P35523 988 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms