RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 SIN3AQ96ST3 1273 aa29.27■■■□□ 2.28
PDLIM4-206ENST00000474421 PLEKHG3A1L390 1219 aa29.26■■■□□ 2.27
PDLIM4-206ENST00000474421 CCDC9Q9Y3X0 531 aaKnown RBP29.26■■■□□ 2.27
PDLIM4-206ENST00000474421 EP400Q96L91 3159 aa29.26■■■□□ 2.27
PDLIM4-206ENST00000474421 COL14A1Q05707 1796 aaKnown RBP29.26■■■□□ 2.27
PDLIM4-206ENST00000474421 CCDC125Q86Z20 511 aa29.25■■■□□ 2.27
PDLIM4-206ENST00000474421 ACEP12821 1306 aa29.24■■■□□ 2.27
PDLIM4-206ENST00000474421 NEUROD1Q13562 356 aa29.24■■■□□ 2.27
PDLIM4-206ENST00000474421 CRYBG1Q9Y4K1 1723 aa29.24■■■□□ 2.27
PDLIM4-206ENST00000474421 SRPK2P78362 688 aaKnown RBP29.23■■■□□ 2.27
PDLIM4-206ENST00000474421 NBPF8Q3BBV2 869 aa29.23■■■□□ 2.27
PDLIM4-206ENST00000474421 QRICH2Q9H0J4 1663 aa29.23■■■□□ 2.27
PDLIM4-206ENST00000474421 BTG4Q9NY30 223 aa29.22■■■□□ 2.27
PDLIM4-206ENST00000474421 TRPM1Q7Z4N2 1603 aa29.21■■■□□ 2.27
PDLIM4-206ENST00000474421 NRAPQ86VF7 1730 aa29.21■■■□□ 2.27
PDLIM4-206ENST00000474421 ONECUT3O60422 494 aaPredicted RBP29.2■■■□□ 2.26
PDLIM4-206ENST00000474421 SEPT12Q8IYM1 358 aa29.2■■■□□ 2.26
PDLIM4-206ENST00000474421 BRWD3Q6RI45 1802 aa29.18■■■□□ 2.26
PDLIM4-206ENST00000474421 PRDM11Q9NQV5 511 aa29.18■■■□□ 2.26
PDLIM4-206ENST00000474421 PPIP5K1Q6PFW1 1433 aa29.18■■■□□ 2.26
PDLIM4-206ENST00000474421 ROCK2O75116 1388 aaKnown RBP29.16■■■□□ 2.26
PDLIM4-206ENST00000474421 CABP2Q9NPB3 220 aa29.16■■■□□ 2.26
PDLIM4-206ENST00000474421 PHRF1Q9P1Y6 1649 aaKnown RBP29.15■■■□□ 2.26
PDLIM4-206ENST00000474421 BRD4O60885 1362 aaPredicted RBP29.14■■■□□ 2.26
PDLIM4-206ENST00000474421 ABTB2Q8N961 1025 aa29.13■■■□□ 2.25
PDLIM4-206ENST00000474421 EVC2Q86UK5 1308 aa29.13■■■□□ 2.25
PDLIM4-206ENST00000474421 KIAA0232Q92628 1395 aa29.12■■■□□ 2.25
PDLIM4-206ENST00000474421 NUTM2GQ5VZR2 741 aa29.11■■■□□ 2.25
PDLIM4-206ENST00000474421 KRT27Q7Z3Y8 459 aa29.11■■■□□ 2.25
PDLIM4-206ENST00000474421 BLMP54132 1417 aaPredicted RBP29.11■■■□□ 2.25
PDLIM4-206ENST00000474421 A0A0G2JS52 829 aa29.1■■■□□ 2.25
PDLIM4-206ENST00000474421 MYT1Q01538 1121 aa29.1■■■□□ 2.25
PDLIM4-206ENST00000474421 FAM98CQ17RN3 349 aaKnown RBP29.09■■■□□ 2.25
PDLIM4-206ENST00000474421 SPATA31A5Q5VU36 1347 aa29.09■■■□□ 2.25
PDLIM4-206ENST00000474421 SPATA31A7Q8IWB4 1347 aa29.09■■■□□ 2.25
PDLIM4-206ENST00000474421 ZC3H6P61129 1189 aaKnown RBP29.07■■■□□ 2.24
PDLIM4-206ENST00000474421 NLRP13Q86W25 1043 aa29.07■■■□□ 2.24
PDLIM4-206ENST00000474421 CABP1Q9NZU7 370 aa29.07■■■□□ 2.24
PDLIM4-206ENST00000474421 USP19O94966 1318 aa29.05■■■□□ 2.24
PDLIM4-206ENST00000474421 SF3B2Q13435 895 aaKnown RBP29.05■■■□□ 2.24
PDLIM4-206ENST00000474421 CHRNA2Q15822 529 aa29.05■■■□□ 2.24
PDLIM4-206ENST00000474421 NRKQ7Z2Y5 1582 aa29.04■■■□□ 2.24
PDLIM4-206ENST00000474421 CPDO75976 1380 aa29.03■■■□□ 2.24
PDLIM4-206ENST00000474421 USP6P35125 1406 aa29.03■■■□□ 2.24
PDLIM4-206ENST00000474421 ZRANB1Q9UGI0 708 aa29.02■■■□□ 2.24
PDLIM4-206ENST00000474421 TONSLQ96HA7 1378 aa29.01■■■□□ 2.24
PDLIM4-206ENST00000474421 STRN4Q9NRL3 753 aa29■■■□□ 2.23
PDLIM4-206ENST00000474421 SPATA31A1Q5TZJ5 1347 aa28.99■■■□□ 2.23
PDLIM4-206ENST00000474421 GCP02774 474 aa28.99■■■□□ 2.23
PDLIM4-206ENST00000474421 EVA1CP58658 441 aa28.99■■■□□ 2.23
PDLIM4-206ENST00000474421 TRIM26Q12899 539 aaPredicted RBP28.99■■■□□ 2.23
PDLIM4-206ENST00000474421 ZNF692Q9BU19 519 aaPredicted RBP28.98■■■□□ 2.23
PDLIM4-206ENST00000474421 THSD7AQ9UPZ6 1657 aa28.98■■■□□ 2.23
PDLIM4-206ENST00000474421 CARD11Q9BXL7 1154 aa28.97■■■□□ 2.23
PDLIM4-206ENST00000474421 SBNO2Q9Y2G9 1366 aa28.97■■■□□ 2.23
PDLIM4-206ENST00000474421 NLRP6P59044 892 aa28.96■■■□□ 2.23
PDLIM4-206ENST00000474421 SSH2Q76I76 1423 aa28.95■■■□□ 2.23
PDLIM4-206ENST00000474421 LMO7Q8WWI1 1683 aa28.94■■■□□ 2.22
PDLIM4-206ENST00000474421 CAMTA1Q9Y6Y1 1673 aa28.94■■■□□ 2.22
PDLIM4-206ENST00000474421 AKAP12Q02952 1782 aa28.93■■■□□ 2.22
PDLIM4-206ENST00000474421 SLIT3O75094 1523 aa28.91■■■□□ 2.22
PDLIM4-206ENST00000474421 DEFB132Q7Z7B7 95 aa28.91■■■□□ 2.22
PDLIM4-206ENST00000474421 BARGINQ6ZT62 677 aa28.9■■■□□ 2.22
PDLIM4-206ENST00000474421 PIK3C2AO00443 1686 aa28.89■■■□□ 2.22
PDLIM4-206ENST00000474421 BAG6P46379 1132 aa28.89■■■□□ 2.22
PDLIM4-206ENST00000474421 USP35Q9P2H5 1018 aa28.89■■■□□ 2.22
PDLIM4-206ENST00000474421 TTC21AQ8NDW8 1320 aa28.89■■■□□ 2.21
PDLIM4-206ENST00000474421 LARP1Q6PKG0 1096 aaKnown RBP28.88■■■□□ 2.21
PDLIM4-206ENST00000474421 RGPD1P0DJD0 1748 aa28.88■■■□□ 2.21
PDLIM4-206ENST00000474421 TTC21BQ7Z4L5 1316 aa28.88■■■□□ 2.21
PDLIM4-206ENST00000474421 TCP11L2Q8N4U5 519 aa28.87■■■□□ 2.21
PDLIM4-206ENST00000474421 THRAP3Q9Y2W1 955 aaKnown RBP28.87■■■□□ 2.21
PDLIM4-206ENST00000474421 CPSF1Q10570 1443 aaKnown RBP28.86■■■□□ 2.21
PDLIM4-206ENST00000474421 AATKQ6ZMQ8 1374 aa28.86■■■□□ 2.21
PDLIM4-206ENST00000474421 COL5A2P05997 1499 aaPredicted RBP28.85■■■□□ 2.21
PDLIM4-206ENST00000474421 KTN1Q86UP2 1357 aaKnown RBP28.85■■■□□ 2.21
PDLIM4-206ENST00000474421 FAM196AQ6ZSG2 479 aa28.84■■■□□ 2.21
PDLIM4-206ENST00000474421 KCNH5Q8NCM2 988 aa28.84■■■□□ 2.21
PDLIM4-206ENST00000474421 ZBTB7CA1YPR0 619 aa28.83■■■□□ 2.21
PDLIM4-206ENST00000474421 FAM182BQ5T319 152 aa28.83■■■□□ 2.21
PDLIM4-206ENST00000474421 SRCAPQ6ZRS2 3230 aa28.83■■■□□ 2.21
PDLIM4-206ENST00000474421 PDE3BQ13370 1112 aa28.82■■■□□ 2.2
PDLIM4-206ENST00000474421 MON2Q7Z3U7 1717 aa28.81■■■□□ 2.2
PDLIM4-206ENST00000474421 CRB1P82279 1406 aa28.81■■■□□ 2.2
PDLIM4-206ENST00000474421 PUS7Q96PZ0 661 aaKnown RBP28.79■■■□□ 2.2
PDLIM4-206ENST00000474421 SLC24A1O60721 1099 aa28.78■■■□□ 2.2
PDLIM4-206ENST00000474421 COL18A1P39060 1754 aa28.78■■■□□ 2.2
PDLIM4-206ENST00000474421 TMC1Q8TDI8 760 aa28.77■■■□□ 2.2
PDLIM4-206ENST00000474421 DISP2A7MBM2 1401 aa28.77■■■□□ 2.2
PDLIM4-206ENST00000474421 HDGFL2Q7Z4V5 671 aaPredicted RBP28.76■■■□□ 2.19
PDLIM4-206ENST00000474421 ARHGEF25Q86VW2 580 aa28.76■■■□□ 2.19
PDLIM4-206ENST00000474421 TNS1Q9HBL0 1735 aaKnown RBP28.76■■■□□ 2.19
PDLIM4-206ENST00000474421 PARP4Q9UKK3 1724 aaKnown RBP28.74■■■□□ 2.19
PDLIM4-206ENST00000474421 C11orf95C9JLR9 678 aaPredicted RBP28.73■■■□□ 2.19
PDLIM4-206ENST00000474421 EN1Q05925 392 aaPredicted RBP28.73■■■□□ 2.19
PDLIM4-206ENST00000474421 TOM1L2Q6ZVM7 507 aa28.73■■■□□ 2.19
PDLIM4-206ENST00000474421 TERF2IPQ9NYB0 399 aa28.73■■■□□ 2.19
PDLIM4-206ENST00000474421 SOX12O15370 315 aa28.72■■■□□ 2.19
PDLIM4-206ENST00000474421 TRIM37O94972 964 aa28.72■■■□□ 2.19
PDLIM4-206ENST00000474421 USP31Q70CQ4 1352 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms