RNA–Protein interactions for RNA: ENST00000473720.5

SMPD4-217, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 555 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-217ENST00000473720 PHRF1Q9P1Y6 1649 aaKnown RBP17.29■□□□□ 0.36
SMPD4-217ENST00000473720 A0A0G2JS52 829 aa17.27■□□□□ 0.36
SMPD4-217ENST00000473720 FAM83GA6ND36 823 aa17.27■□□□□ 0.36
SMPD4-217ENST00000473720 MYT1Q01538 1121 aa17.27■□□□□ 0.36
SMPD4-217ENST00000473720 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
SMPD4-217ENST00000473720 EP400Q96L91 3159 aa17.26■□□□□ 0.35
SMPD4-217ENST00000473720 NUTM2GQ5VZR2 741 aa17.25■□□□□ 0.35
SMPD4-217ENST00000473720 SIN3AQ96ST3 1273 aa17.25■□□□□ 0.35
SMPD4-217ENST00000473720 BTG4Q9NY30 223 aa17.25■□□□□ 0.35
SMPD4-217ENST00000473720 TRPM1Q7Z4N2 1603 aa17.25■□□□□ 0.35
SMPD4-217ENST00000473720 VPS72Q15906 364 aa17.24■□□□□ 0.35
SMPD4-217ENST00000473720 SRPK2P78362 688 aaKnown RBP17.23■□□□□ 0.35
SMPD4-217ENST00000473720 SEPT12Q8IYM1 358 aa17.23■□□□□ 0.35
SMPD4-217ENST00000473720 L3MBTL2Q969R5 705 aa17.22■□□□□ 0.35
SMPD4-217ENST00000473720 ACEP12821 1306 aa17.21■□□□□ 0.35
SMPD4-217ENST00000473720 CENPJQ9HC77 1338 aaPredicted RBP17.21■□□□□ 0.35
SMPD4-217ENST00000473720 PRDM11Q9NQV5 511 aa17.21■□□□□ 0.35
SMPD4-217ENST00000473720 CCDC61Q9Y6R9 512 aa17.2■□□□□ 0.34
SMPD4-217ENST00000473720 ZC3H6P61129 1189 aaKnown RBP17.19■□□□□ 0.34
SMPD4-217ENST00000473720 CHRNA2Q15822 529 aa17.19■□□□□ 0.34
SMPD4-217ENST00000473720 FAM98CQ17RN3 349 aaKnown RBP17.19■□□□□ 0.34
SMPD4-217ENST00000473720 CABP2Q9NPB3 220 aa17.19■□□□□ 0.34
SMPD4-217ENST00000473720 NBPF8Q3BBV2 869 aa17.18■□□□□ 0.34
SMPD4-217ENST00000473720 KRT27Q7Z3Y8 459 aa17.18■□□□□ 0.34
SMPD4-217ENST00000473720 PPIP5K1Q6PFW1 1433 aa17.18■□□□□ 0.34
SMPD4-217ENST00000473720 CCDC125Q86Z20 511 aa17.17■□□□□ 0.34
SMPD4-217ENST00000473720 STRN4Q9NRL3 753 aa17.17■□□□□ 0.34
SMPD4-217ENST00000473720 POLR3AO14802 1390 aaPredicted RBP17.16■□□□□ 0.34
SMPD4-217ENST00000473720 KIAA0232Q92628 1395 aa17.16■□□□□ 0.34
SMPD4-217ENST00000473720 SF3B2Q13435 895 aaKnown RBP17.16■□□□□ 0.34
SMPD4-217ENST00000473720 ABTB2Q8N961 1025 aa17.16■□□□□ 0.34
SMPD4-217ENST00000473720 NRKQ7Z2Y5 1582 aa17.15■□□□□ 0.34
SMPD4-217ENST00000473720 BLMP54132 1417 aaPredicted RBP17.15■□□□□ 0.34
SMPD4-217ENST00000473720 AKAP12Q02952 1782 aa17.15■□□□□ 0.34
SMPD4-217ENST00000473720 ROCK2O75116 1388 aaKnown RBP17.15■□□□□ 0.34
SMPD4-217ENST00000473720 RGPD1P0DJD0 1748 aa17.14■□□□□ 0.33
SMPD4-217ENST00000473720 PLEKHG3A1L390 1219 aa17.14■□□□□ 0.33
SMPD4-217ENST00000473720 DEFB132Q7Z7B7 95 aa17.14■□□□□ 0.33
SMPD4-217ENST00000473720 ZRANB1Q9UGI0 708 aa17.14■□□□□ 0.33
SMPD4-217ENST00000473720 RGPD5Q99666 1765 aa17.14■□□□□ 0.33
SMPD4-217ENST00000473720 ZBTB7CA1YPR0 619 aa17.13■□□□□ 0.33
SMPD4-217ENST00000473720 ONECUT3O60422 494 aaPredicted RBP17.13■□□□□ 0.33
SMPD4-217ENST00000473720 FAM182BQ5T319 152 aa17.13■□□□□ 0.33
SMPD4-217ENST00000473720 USP35Q9P2H5 1018 aa17.13■□□□□ 0.33
SMPD4-217ENST00000473720 THSD7AQ9UPZ6 1657 aa17.12■□□□□ 0.33
SMPD4-217ENST00000473720 SPATA31A5Q5VU36 1347 aa17.12■□□□□ 0.33
SMPD4-217ENST00000473720 SPATA31A7Q8IWB4 1347 aa17.12■□□□□ 0.33
SMPD4-217ENST00000473720 EVA1CP58658 441 aa17.11■□□□□ 0.33
SMPD4-217ENST00000473720 CABP1Q9NZU7 370 aa17.11■□□□□ 0.33
SMPD4-217ENST00000473720 EVC2Q86UK5 1308 aa17.1■□□□□ 0.33
SMPD4-217ENST00000473720 PIK3C2AO00443 1686 aa17.1■□□□□ 0.33
SMPD4-217ENST00000473720 NLRP13Q86W25 1043 aa17.09■□□□□ 0.33
SMPD4-217ENST00000473720 LMO7Q8WWI1 1683 aa17.09■□□□□ 0.33
SMPD4-217ENST00000473720 TNS1Q9HBL0 1735 aaKnown RBP17.09■□□□□ 0.33
SMPD4-217ENST00000473720 CAMTA1Q9Y6Y1 1673 aa17.08■□□□□ 0.32
SMPD4-217ENST00000473720 USP6P35125 1406 aa17.07■□□□□ 0.32
SMPD4-217ENST00000473720 SPATA31A1Q5TZJ5 1347 aa17.07■□□□□ 0.32
SMPD4-217ENST00000473720 NLRP6P59044 892 aa17.06■□□□□ 0.32
SMPD4-217ENST00000473720 SSH2Q76I76 1423 aa17.05■□□□□ 0.32
SMPD4-217ENST00000473720 USP19O94966 1318 aa17.05■□□□□ 0.32
SMPD4-217ENST00000473720 GCP02774 474 aa17.05■□□□□ 0.32
SMPD4-217ENST00000473720 BAG6P46379 1132 aa17.05■□□□□ 0.32
SMPD4-217ENST00000473720 LARP1Q6PKG0 1096 aaKnown RBP17.04■□□□□ 0.32
SMPD4-217ENST00000473720 MON2Q7Z3U7 1717 aa17.04■□□□□ 0.32
SMPD4-217ENST00000473720 TONSLQ96HA7 1378 aa17.03■□□□□ 0.32
SMPD4-217ENST00000473720 WNK3Q9BYP7 1800 aa17.03■□□□□ 0.32
SMPD4-217ENST00000473720 SOX12O15370 315 aa17.03■□□□□ 0.32
SMPD4-217ENST00000473720 COL18A1P39060 1754 aa17.02■□□□□ 0.32
SMPD4-217ENST00000473720 CARD11Q9BXL7 1154 aa17.02■□□□□ 0.32
SMPD4-217ENST00000473720 CPDO75976 1380 aa17.02■□□□□ 0.31
SMPD4-217ENST00000473720 EN1Q05925 392 aaPredicted RBP17.01■□□□□ 0.31
SMPD4-217ENST00000473720 LTN1O94822 1766 aa17.01■□□□□ 0.31
SMPD4-217ENST00000473720 PARP4Q9UKK3 1724 aaKnown RBP17.01■□□□□ 0.31
SMPD4-217ENST00000473720 BRD4O60885 1362 aaPredicted RBP17.01■□□□□ 0.31
SMPD4-217ENST00000473720 SLIT3O75094 1523 aa17.01■□□□□ 0.31
SMPD4-217ENST00000473720 SBF2Q86WG5 1849 aa17■□□□□ 0.31
SMPD4-217ENST00000473720 COL5A2P05997 1499 aaPredicted RBP17■□□□□ 0.31
SMPD4-217ENST00000473720 KAT6BQ8WYB5 2073 aa17■□□□□ 0.31
SMPD4-217ENST00000473720 PSDA5PKW4 1024 aaPredicted RBP16.99■□□□□ 0.31
SMPD4-217ENST00000473720 TRIM37O94972 964 aa16.99■□□□□ 0.31
SMPD4-217ENST00000473720 PDE3BQ13370 1112 aa16.99■□□□□ 0.31
SMPD4-217ENST00000473720 TCP11L2Q8N4U5 519 aa16.99■□□□□ 0.31
SMPD4-217ENST00000473720 KTN1Q86UP2 1357 aaKnown RBP16.98■□□□□ 0.31
SMPD4-217ENST00000473720 TTC21BQ7Z4L5 1316 aa16.97■□□□□ 0.31
SMPD4-217ENST00000473720 FAM196AQ6ZSG2 479 aa16.97■□□□□ 0.31
SMPD4-217ENST00000473720 BARGINQ6ZT62 677 aa16.97■□□□□ 0.31
SMPD4-217ENST00000473720 ZNF692Q9BU19 519 aaPredicted RBP16.97■□□□□ 0.31
SMPD4-217ENST00000473720 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.96■□□□□ 0.31
SMPD4-217ENST00000473720 TMC1Q8TDI8 760 aa16.96■□□□□ 0.31
SMPD4-217ENST00000473720 LRRC37A3O60309 1634 aa16.96■□□□□ 0.3
SMPD4-217ENST00000473720 CRB1P82279 1406 aa16.96■□□□□ 0.3
SMPD4-217ENST00000473720 EZH2Q15910 746 aaKnown RBP16.95■□□□□ 0.3
SMPD4-217ENST00000473720 TOM1L2Q6ZVM7 507 aa16.95■□□□□ 0.3
SMPD4-217ENST00000473720 APBA3O96018 575 aa16.94■□□□□ 0.3
SMPD4-217ENST00000473720 TRIM26Q12899 539 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-217ENST00000473720 CPSF1Q10570 1443 aaKnown RBP16.94■□□□□ 0.3
SMPD4-217ENST00000473720 RREB1Q92766 1687 aa16.94■□□□□ 0.3
SMPD4-217ENST00000473720 TTC21AQ8NDW8 1320 aa16.94■□□□□ 0.3
SMPD4-217ENST00000473720 NUP188Q5SRE5 1749 aa16.93■□□□□ 0.3
SMPD4-217ENST00000473720 AATKQ6ZMQ8 1374 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms