RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 EP400Q96L91 3159 aa28.62■■■□□ 2.17
COL9A3-210ENST00000472880 CDK19Q9BWU1 502 aa28.6■■■□□ 2.17
COL9A3-210ENST00000472880 SEPT12Q8IYM1 358 aa28.59■■■□□ 2.17
COL9A3-210ENST00000472880 NBPF1Q3BBV0 1214 aa28.57■■■□□ 2.16
COL9A3-210ENST00000472880 BTG4Q9NY30 223 aa28.57■■■□□ 2.16
COL9A3-210ENST00000472880 BLMP54132 1417 aaPredicted RBP28.56■■■□□ 2.16
COL9A3-210ENST00000472880 PHRF1Q9P1Y6 1649 aaKnown RBP28.54■■■□□ 2.16
COL9A3-210ENST00000472880 POLR3AO14802 1390 aaPredicted RBP28.54■■■□□ 2.16
COL9A3-210ENST00000472880 A0A0G2JS52 829 aa28.54■■■□□ 2.16
COL9A3-210ENST00000472880 MYT1Q01538 1121 aa28.54■■■□□ 2.16
COL9A3-210ENST00000472880 ONECUT3O60422 494 aaPredicted RBP28.53■■■□□ 2.16
COL9A3-210ENST00000472880 CCDC61Q9Y6R9 512 aa28.53■■■□□ 2.16
COL9A3-210ENST00000472880 PRDM11Q9NQV5 511 aa28.52■■■□□ 2.16
COL9A3-210ENST00000472880 ACEP12821 1306 aa28.51■■■□□ 2.15
COL9A3-210ENST00000472880 CENPJQ9HC77 1338 aaPredicted RBP28.51■■■□□ 2.15
COL9A3-210ENST00000472880 QRICH2Q9H0J4 1663 aa28.51■■■□□ 2.15
COL9A3-210ENST00000472880 KRT27Q7Z3Y8 459 aa28.5■■■□□ 2.15
COL9A3-210ENST00000472880 ZRANB1Q9UGI0 708 aa28.5■■■□□ 2.15
COL9A3-210ENST00000472880 FAM98CQ17RN3 349 aaKnown RBP28.49■■■□□ 2.15
COL9A3-210ENST00000472880 SRPK2P78362 688 aaKnown RBP28.48■■■□□ 2.15
COL9A3-210ENST00000472880 SF3B2Q13435 895 aaKnown RBP28.48■■■□□ 2.15
COL9A3-210ENST00000472880 KIAA0232Q92628 1395 aa28.48■■■□□ 2.15
COL9A3-210ENST00000472880 PLEKHG3A1L390 1219 aa28.47■■■□□ 2.15
COL9A3-210ENST00000472880 NBPF8Q3BBV2 869 aa28.47■■■□□ 2.15
COL9A3-210ENST00000472880 PPIP5K1Q6PFW1 1433 aa28.46■■■□□ 2.15
COL9A3-210ENST00000472880 L3MBTL2Q969R5 705 aa28.46■■■□□ 2.15
COL9A3-210ENST00000472880 NUTM2GQ5VZR2 741 aa28.45■■■□□ 2.14
COL9A3-210ENST00000472880 SPATA31A5Q5VU36 1347 aa28.44■■■□□ 2.14
COL9A3-210ENST00000472880 SPATA31A7Q8IWB4 1347 aa28.44■■■□□ 2.14
COL9A3-210ENST00000472880 TRPM1Q7Z4N2 1603 aa28.44■■■□□ 2.14
COL9A3-210ENST00000472880 NRKQ7Z2Y5 1582 aa28.43■■■□□ 2.14
COL9A3-210ENST00000472880 ZC3H6P61129 1189 aaKnown RBP28.41■■■□□ 2.14
COL9A3-210ENST00000472880 CHRNA2Q15822 529 aa28.41■■■□□ 2.14
COL9A3-210ENST00000472880 ABTB2Q8N961 1025 aa28.41■■■□□ 2.14
COL9A3-210ENST00000472880 CABP2Q9NPB3 220 aa28.41■■■□□ 2.14
COL9A3-210ENST00000472880 THSD7AQ9UPZ6 1657 aa28.41■■■□□ 2.14
COL9A3-210ENST00000472880 DEFB132Q7Z7B7 95 aa28.4■■■□□ 2.14
COL9A3-210ENST00000472880 SIN3AQ96ST3 1273 aa28.4■■■□□ 2.14
COL9A3-210ENST00000472880 STRN4Q9NRL3 753 aa28.38■■■□□ 2.13
COL9A3-210ENST00000472880 NEUROD1Q13562 356 aa28.37■■■□□ 2.13
COL9A3-210ENST00000472880 USP19O94966 1318 aa28.36■■■□□ 2.13
COL9A3-210ENST00000472880 BRD4O60885 1362 aaPredicted RBP28.36■■■□□ 2.13
COL9A3-210ENST00000472880 ROCK2O75116 1388 aaKnown RBP28.36■■■□□ 2.13
COL9A3-210ENST00000472880 SPATA31A1Q5TZJ5 1347 aa28.35■■■□□ 2.13
COL9A3-210ENST00000472880 RGPD1P0DJD0 1748 aa28.33■■■□□ 2.13
COL9A3-210ENST00000472880 NLRP13Q86W25 1043 aa28.33■■■□□ 2.13
COL9A3-210ENST00000472880 EVC2Q86UK5 1308 aa28.33■■■□□ 2.13
COL9A3-210ENST00000472880 CPDO75976 1380 aa28.33■■■□□ 2.13
COL9A3-210ENST00000472880 SSH2Q76I76 1423 aa28.33■■■□□ 2.13
COL9A3-210ENST00000472880 BAG6P46379 1132 aa28.32■■■□□ 2.12
COL9A3-210ENST00000472880 USP6P35125 1406 aa28.32■■■□□ 2.12
COL9A3-210ENST00000472880 LMO7Q8WWI1 1683 aa28.32■■■□□ 2.12
COL9A3-210ENST00000472880 EVA1CP58658 441 aa28.31■■■□□ 2.12
COL9A3-210ENST00000472880 CABP1Q9NZU7 370 aa28.31■■■□□ 2.12
COL9A3-210ENST00000472880 CAMTA1Q9Y6Y1 1673 aa28.29■■■□□ 2.12
COL9A3-210ENST00000472880 FAM182BQ5T319 152 aa28.29■■■□□ 2.12
COL9A3-210ENST00000472880 USP35Q9P2H5 1018 aa28.28■■■□□ 2.12
COL9A3-210ENST00000472880 GCP02774 474 aa28.27■■■□□ 2.12
COL9A3-210ENST00000472880 SLIT3O75094 1523 aa28.24■■■□□ 2.11
COL9A3-210ENST00000472880 TNS1Q9HBL0 1735 aaKnown RBP28.24■■■□□ 2.11
COL9A3-210ENST00000472880 NLRP6P59044 892 aa28.24■■■□□ 2.11
COL9A3-210ENST00000472880 PIK3C2AO00443 1686 aa28.23■■■□□ 2.11
COL9A3-210ENST00000472880 LARP1Q6PKG0 1096 aaKnown RBP28.23■■■□□ 2.11
COL9A3-210ENST00000472880 BARGINQ6ZT62 677 aa28.23■■■□□ 2.11
COL9A3-210ENST00000472880 COL5A2P05997 1499 aaPredicted RBP28.22■■■□□ 2.11
COL9A3-210ENST00000472880 SRCAPQ6ZRS2 3230 aa28.22■■■□□ 2.11
COL9A3-210ENST00000472880 AKAP12Q02952 1782 aa28.2■■■□□ 2.11
COL9A3-210ENST00000472880 ZBTB7CA1YPR0 619 aa28.2■■■□□ 2.1
COL9A3-210ENST00000472880 TCP11L2Q8N4U5 519 aa28.2■■■□□ 2.1
COL9A3-210ENST00000472880 DISP2A7MBM2 1401 aa28.19■■■□□ 2.1
COL9A3-210ENST00000472880 FAM196AQ6ZSG2 479 aa28.19■■■□□ 2.1
COL9A3-210ENST00000472880 EN1Q05925 392 aaPredicted RBP28.18■■■□□ 2.1
COL9A3-210ENST00000472880 PDE3BQ13370 1112 aa28.17■■■□□ 2.1
COL9A3-210ENST00000472880 THRAP3Q9Y2W1 955 aaKnown RBP28.17■■■□□ 2.1
COL9A3-210ENST00000472880 AATKQ6ZMQ8 1374 aa28.16■■■□□ 2.1
COL9A3-210ENST00000472880 ZNF692Q9BU19 519 aaPredicted RBP28.16■■■□□ 2.1
COL9A3-210ENST00000472880 CRB1P82279 1406 aa28.16■■■□□ 2.1
COL9A3-210ENST00000472880 TONSLQ96HA7 1378 aa28.14■■■□□ 2.1
COL9A3-210ENST00000472880 SBNO2Q9Y2G9 1366 aa28.14■■■□□ 2.1
COL9A3-210ENST00000472880 TRIM37O94972 964 aa28.14■■■□□ 2.1
COL9A3-210ENST00000472880 PARP4Q9UKK3 1724 aaKnown RBP28.14■■■□□ 2.1
COL9A3-210ENST00000472880 TTC21BQ7Z4L5 1316 aa28.14■■■□□ 2.09
COL9A3-210ENST00000472880 CARD11Q9BXL7 1154 aa28.13■■■□□ 2.09
COL9A3-210ENST00000472880 LRP5O75197 1615 aa28.13■■■□□ 2.09
COL9A3-210ENST00000472880 PSDA5PKW4 1024 aaPredicted RBP28.12■■■□□ 2.09
COL9A3-210ENST00000472880 TTC21AQ8NDW8 1320 aa28.12■■■□□ 2.09
COL9A3-210ENST00000472880 CPSF1Q10570 1443 aaKnown RBP28.11■■■□□ 2.09
COL9A3-210ENST00000472880 KTN1Q86UP2 1357 aaKnown RBP28.11■■■□□ 2.09
COL9A3-210ENST00000472880 MON2Q7Z3U7 1717 aa28.1■■■□□ 2.09
COL9A3-210ENST00000472880 COL18A1P39060 1754 aa28.1■■■□□ 2.09
COL9A3-210ENST00000472880 KCNH5Q8NCM2 988 aa28.09■■■□□ 2.09
COL9A3-210ENST00000472880 EZH2Q15910 746 aaKnown RBP28.08■■■□□ 2.09
COL9A3-210ENST00000472880 APBA3O96018 575 aa28.07■■■□□ 2.08
COL9A3-210ENST00000472880 PARD3Q8TEW0 1356 aa28.07■■■□□ 2.08
COL9A3-210ENST00000472880 SOX12O15370 315 aa28.06■■■□□ 2.08
COL9A3-210ENST00000472880 TOM1L2Q6ZVM7 507 aa28.06■■■□□ 2.08
COL9A3-210ENST00000472880 LRRC37A3O60309 1634 aa28.06■■■□□ 2.08
COL9A3-210ENST00000472880 WNK3Q9BYP7 1800 aa28.04■■■□□ 2.08
COL9A3-210ENST00000472880 NFAT5O94916 1531 aa28.04■■■□□ 2.08
COL9A3-210ENST00000472880 WDR17Q8IZU2 1322 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms