RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ARMC2	Q8NEN0	867 aa		7.49	□□□□□ -1.21
PTCD3-209	ENST00000472044	NKX2-3	Q8TAU0	364 aa		7.49	□□□□□ -1.21
PTCD3-209	ENST00000472044	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	7.49	□□□□□ -1.21	2e-6	■■■□□ 15.9
PTCD3-209	ENST00000472044	ARX	Q96QS3	562 aa		7.49	□□□□□ -1.21
PTCD3-209	ENST00000472044	POM121C	A8CG34	1229 aa		7.48	□□□□□ -1.21
PTCD3-209	ENST00000472044	CTH	P32929	405 aa		7.48	□□□□□ -1.21
PTCD3-209	ENST00000472044	S1PR4	O95977	384 aa		7.47	□□□□□ -1.21
PTCD3-209	ENST00000472044	SOX11	P35716	441 aa		7.47	□□□□□ -1.21
PTCD3-209	ENST00000472044	CCDC82	Q8N4S0	544 aa		7.47	□□□□□ -1.21
PTCD3-209	ENST00000472044	SERPINA10	Q9UK55	444 aa		7.47	□□□□□ -1.21
PTCD3-209	ENST00000472044	GPSM3	Q9Y4H4	160 aa		7.47	□□□□□ -1.21
PTCD3-209	ENST00000472044	NR1H3	Q13133	447 aa		7.46	□□□□□ -1.22
PTCD3-209	ENST00000472044	PDXDC2P	Q6P474	469 aa		7.46	□□□□□ -1.22
PTCD3-209	ENST00000472044	ALG2	Q9H553	416 aa		7.46	□□□□□ -1.22
PTCD3-209	ENST00000472044	ZBBX	A8MT70	800 aa		7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	VAC14	Q08AM6	782 aa		7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	NBPF14	Q5TI25	921 aa		7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	PTCRA	Q6ISU1	281 aa	Predicted RBP	7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	GLMN	Q92990	594 aa		7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	CALR3	Q96L12	384 aa	Known RBP	7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	UNC93B1	Q9H1C4	597 aa		7.45	□□□□□ -1.22
PTCD3-209	ENST00000472044	FBXO45	P0C2W1	286 aa		7.44	□□□□□ -1.22
PTCD3-209	ENST00000472044	HDGFL1	Q5TGJ6	251 aa		7.44	□□□□□ -1.22
PTCD3-209	ENST00000472044	CCDC24	Q8N4L8	307 aa		7.44	□□□□□ -1.22
PTCD3-209	ENST00000472044	ADAMTS19	Q8TE59	1207 aa		7.44	□□□□□ -1.22
PTCD3-209	ENST00000472044	FCF1	Q9Y324	198 aa	Known RBP	7.44	□□□□□ -1.22
PTCD3-209	ENST00000472044	EIF4G2	P78344	907 aa	Known RBP eCLIP	7.43	□□□□□ -1.22
PTCD3-209	ENST00000472044	IFFO2	Q5TF58	517 aa		7.43	□□□□□ -1.22
PTCD3-209	ENST00000472044	CCDC97	Q96F63	343 aa	Predicted RBP	7.43	□□□□□ -1.22
PTCD3-209	ENST00000472044	PTK2	Q05397	1052 aa		7.42	□□□□□ -1.22
PTCD3-209	ENST00000472044	ANKLE1	Q8NAG6	615 aa		7.42	□□□□□ -1.22
PTCD3-209	ENST00000472044	RNF223	E7ERA6	249 aa		7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	GGCX	P38435	758 aa		7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	MCCD1	P59942	119 aa	Predicted RBP	7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	SH3BP5L	Q7L8J4	393 aa		7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	ARID3A	Q99856	593 aa		7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	OCSTAMP	Q9BR26	566 aa		7.41	□□□□□ -1.22
PTCD3-209	ENST00000472044	SEMA3F	Q13275	785 aa		7.4	□□□□□ -1.22
PTCD3-209	ENST00000472044	SH3RF1	Q7Z6J0	888 aa		7.4	□□□□□ -1.22
PTCD3-209	ENST00000472044	HOMEZ	Q8IX15	550 aa		7.4	□□□□□ -1.22
PTCD3-209	ENST00000472044	ZNF592	Q92610	1267 aa		7.4	□□□□□ -1.22
PTCD3-209	ENST00000472044	PPEF1	O14829	653 aa	Predicted RBP	7.39	□□□□□ -1.23
PTCD3-209	ENST00000472044	PPP1R18	Q6NYC8	613 aa		7.39	□□□□□ -1.23
PTCD3-209	ENST00000472044	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	7.39	□□□□□ -1.23
PTCD3-209	ENST00000472044	ZNF511	Q8NB15	262 aa		7.38	□□□□□ -1.23
PTCD3-209	ENST00000472044	BAP1	Q92560	729 aa		7.38	□□□□□ -1.23
PTCD3-209	ENST00000472044	ARHGAP9	Q9BRR9	750 aa		7.38	□□□□□ -1.23
PTCD3-209	ENST00000472044	BPHL	Q86WA6	291 aa	Predicted RBP	7.37	□□□□□ -1.23
PTCD3-209	ENST00000472044	ZBTB24	O43167	697 aa	Predicted RBP	7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	RPIA	P49247	311 aa		7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	PLA2G2C	Q5R387	149 aa		7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	ADAM32	Q8TC27	787 aa		7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	UCN2	Q96RP3	112 aa		7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	PPP1R12C	Q9BZL4	782 aa		7.36	□□□□□ -1.23
PTCD3-209	ENST00000472044	SH3BP2	P78314	561 aa		7.35	□□□□□ -1.23
PTCD3-209	ENST00000472044	ZBTB33	Q86T24	672 aa		7.35	□□□□□ -1.23
PTCD3-209	ENST00000472044	NFATC2IP	Q8NCF5	419 aa		7.35	□□□□□ -1.23
PTCD3-209	ENST00000472044	PPP1R15A	O75807	674 aa	Predicted RBP	7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	WNT7B	P56706	349 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	TRIM32	Q13049	653 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	C4orf48	Q5BLP8	95 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	CFAP70	Q5T0N1	1121 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	FOXJ1	Q92949	421 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	C1QTNF2	Q9BXJ5	285 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	CEP126	Q9P2H0	1117 aa		7.34	□□□□□ -1.23
PTCD3-209	ENST00000472044	PALM3	A6NDB9	673 aa	Predicted RBP	7.33	□□□□□ -1.24
PTCD3-209	ENST00000472044	LINC01559	Q495D7	138 aa		7.33	□□□□□ -1.24
PTCD3-209	ENST00000472044	ERFE	Q4G0M1	354 aa		7.33	□□□□□ -1.24
PTCD3-209	ENST00000472044	TRMT44	Q8IYL2	757 aa	Known RBP	7.33	□□□□□ -1.24
PTCD3-209	ENST00000472044	ATP9B	O43861	1147 aa		7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	SRPK2	P78362	688 aa	Known RBP	7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	PHTF2	Q8N3S3	785 aa		7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	TFIP11	Q9UBB9	837 aa	Known RBP	7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	CHIC2	Q9UKJ5	165 aa		7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	PCDHB9	Q9Y5E1	797 aa		7.32	□□□□□ -1.24
PTCD3-209	ENST00000472044	MAGEB6P1	A0A0J9YX57	407 aa		7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	CD2BP2	O95400	341 aa	Known RBP	7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	VARS	P26640	1264 aa	Known RBP	7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	SKOR1	P84550	965 aa		7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	AGER	Q15109	404 aa		7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	TBC1D9	Q6ZT07	1266 aa		7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	DZIP3	Q86Y13	1208 aa	Known RBP	7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	CDV3	Q9UKY7	258 aa	Known RBP	7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.31	□□□□□ -1.24
PTCD3-209	ENST00000472044	LIAT1	Q6ZQX7	453 aa		7.3	□□□□□ -1.24
PTCD3-209	ENST00000472044	EMID1	Q96A84	441 aa	Predicted RBP	7.3	□□□□□ -1.24
PTCD3-209	ENST00000472044	PBXIP1	Q96AQ6	731 aa		7.3	□□□□□ -1.24
PTCD3-209	ENST00000472044	CARD14	Q9BXL6	1004 aa		7.3	□□□□□ -1.24
PTCD3-209	ENST00000472044	PIK3CD	O00329	1044 aa		7.29	□□□□□ -1.24
PTCD3-209	ENST00000472044	LZTS3	O60299	673 aa	Predicted RBP	7.29	□□□□□ -1.24
PTCD3-209	ENST00000472044	SLFNL1	Q499Z3	407 aa		7.29	□□□□□ -1.24
PTCD3-209	ENST00000472044	CCDC125	Q86Z20	511 aa		7.29	□□□□□ -1.24
PTCD3-209	ENST00000472044	PLEKHM2	Q8IWE5	1019 aa		7.29	□□□□□ -1.24
PTCD3-209	ENST00000472044	ESPN	B1AK53	854 aa		7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	LMOD1	P29536	600 aa	Predicted RBP	7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	MPND	Q8N594	471 aa		7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	FAM174A	Q8TBP5	190 aa		7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	SLC10A4	Q96EP9	437 aa		7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	PLA2G2E	Q9NZK7	142 aa		7.28	□□□□□ -1.24
PTCD3-209	ENST00000472044	MAP4K5	Q9Y4K4	846 aa		7.28	□□□□□ -1.24

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