RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-213ENST00000471978 CENPJQ9HC77 1338 aaPredicted RBP32.48■■■□□ 2.79
C9orf3-213ENST00000471978 BTG4Q9NY30 223 aa32.47■■■□□ 2.79
C9orf3-213ENST00000471978 TOPAZ1Q8N9V7 1692 aa32.46■■■□□ 2.79
C9orf3-213ENST00000471978 ACEP12821 1306 aa32.46■■■□□ 2.79
C9orf3-213ENST00000471978 POLR3AO14802 1390 aaPredicted RBP32.45■■■□□ 2.79
C9orf3-213ENST00000471978 NEUROD1Q13562 356 aa32.45■■■□□ 2.79
C9orf3-213ENST00000471978 SEPT12Q8IYM1 358 aa32.45■■■□□ 2.79
C9orf3-213ENST00000471978 PLEKHG3A1L390 1219 aa32.44■■■□□ 2.78
C9orf3-213ENST00000471978 NBPF8Q3BBV2 869 aa32.44■■■□□ 2.78
C9orf3-213ENST00000471978 CCDC125Q86Z20 511 aa32.44■■■□□ 2.78
C9orf3-213ENST00000471978 COL14A1Q05707 1796 aaKnown RBP32.44■■■□□ 2.78
C9orf3-213ENST00000471978 CRYBG1Q9Y4K1 1723 aa32.43■■■□□ 2.78
C9orf3-213ENST00000471978 SRPK2P78362 688 aaKnown RBP32.43■■■□□ 2.78
C9orf3-213ENST00000471978 ONECUT3O60422 494 aaPredicted RBP32.42■■■□□ 2.78
C9orf3-213ENST00000471978 NRAPQ86VF7 1730 aa32.41■■■□□ 2.78
C9orf3-213ENST00000471978 BRWD3Q6RI45 1802 aa32.4■■■□□ 2.78
C9orf3-213ENST00000471978 NUTM2GQ5VZR2 741 aa32.39■■■□□ 2.78
C9orf3-213ENST00000471978 CABP2Q9NPB3 220 aa32.39■■■□□ 2.78
C9orf3-213ENST00000471978 PRDM11Q9NQV5 511 aa32.39■■■□□ 2.78
C9orf3-213ENST00000471978 QRICH2Q9H0J4 1663 aa32.38■■■□□ 2.77
C9orf3-213ENST00000471978 PPIP5K1Q6PFW1 1433 aa32.36■■■□□ 2.77
C9orf3-213ENST00000471978 TRPM1Q7Z4N2 1603 aa32.36■■■□□ 2.77
C9orf3-213ENST00000471978 KIAA0232Q92628 1395 aa32.34■■■□□ 2.77
C9orf3-213ENST00000471978 A0A0G2JS52 829 aa32.34■■■□□ 2.77
C9orf3-213ENST00000471978 MYT1Q01538 1121 aa32.34■■■□□ 2.77
C9orf3-213ENST00000471978 FAM98CQ17RN3 349 aaKnown RBP32.34■■■□□ 2.77
C9orf3-213ENST00000471978 KRT27Q7Z3Y8 459 aa32.33■■■□□ 2.77
C9orf3-213ENST00000471978 ABTB2Q8N961 1025 aa32.33■■■□□ 2.77
C9orf3-213ENST00000471978 PHRF1Q9P1Y6 1649 aaKnown RBP32.33■■■□□ 2.77
C9orf3-213ENST00000471978 BLMP54132 1417 aaPredicted RBP32.32■■■□□ 2.76
C9orf3-213ENST00000471978 ROCK2O75116 1388 aaKnown RBP32.32■■■□□ 2.76
C9orf3-213ENST00000471978 ZC3H6P61129 1189 aaKnown RBP32.31■■■□□ 2.76
C9orf3-213ENST00000471978 CHRNA2Q15822 529 aa32.31■■■□□ 2.76
C9orf3-213ENST00000471978 SPATA31A5Q5VU36 1347 aa32.3■■■□□ 2.76
C9orf3-213ENST00000471978 SPATA31A7Q8IWB4 1347 aa32.3■■■□□ 2.76
C9orf3-213ENST00000471978 CABP1Q9NZU7 370 aa32.28■■■□□ 2.76
C9orf3-213ENST00000471978 EVC2Q86UK5 1308 aa32.26■■■□□ 2.76
C9orf3-213ENST00000471978 SRCAPQ6ZRS2 3230 aa32.26■■■□□ 2.75
C9orf3-213ENST00000471978 ZRANB1Q9UGI0 708 aa32.25■■■□□ 2.75
C9orf3-213ENST00000471978 SF3B2Q13435 895 aaKnown RBP32.24■■■□□ 2.75
C9orf3-213ENST00000471978 NLRP13Q86W25 1043 aa32.23■■■□□ 2.75
C9orf3-213ENST00000471978 STRN4Q9NRL3 753 aa32.23■■■□□ 2.75
C9orf3-213ENST00000471978 USP19O94966 1318 aa32.23■■■□□ 2.75
C9orf3-213ENST00000471978 BRD4O60885 1362 aaPredicted RBP32.22■■■□□ 2.75
C9orf3-213ENST00000471978 NRKQ7Z2Y5 1582 aa32.22■■■□□ 2.75
C9orf3-213ENST00000471978 SPATA31A1Q5TZJ5 1347 aa32.21■■■□□ 2.75
C9orf3-213ENST00000471978 DEFB132Q7Z7B7 95 aa32.2■■■□□ 2.75
C9orf3-213ENST00000471978 USP6P35125 1406 aa32.19■■■□□ 2.74
C9orf3-213ENST00000471978 CPDO75976 1380 aa32.19■■■□□ 2.74
C9orf3-213ENST00000471978 GCP02774 474 aa32.18■■■□□ 2.74
C9orf3-213ENST00000471978 EVA1CP58658 441 aa32.18■■■□□ 2.74
C9orf3-213ENST00000471978 THSD7AQ9UPZ6 1657 aa32.16■■■□□ 2.74
C9orf3-213ENST00000471978 NLRP6P59044 892 aa32.14■■■□□ 2.74
C9orf3-213ENST00000471978 SSH2Q76I76 1423 aa32.14■■■□□ 2.74
C9orf3-213ENST00000471978 FAM182BQ5T319 152 aa32.13■■■□□ 2.73
C9orf3-213ENST00000471978 USP35Q9P2H5 1018 aa32.13■■■□□ 2.73
C9orf3-213ENST00000471978 CAMTA1Q9Y6Y1 1673 aa32.13■■■□□ 2.73
C9orf3-213ENST00000471978 TONSLQ96HA7 1378 aa32.12■■■□□ 2.73
C9orf3-213ENST00000471978 CARD11Q9BXL7 1154 aa32.11■■■□□ 2.73
C9orf3-213ENST00000471978 LMO7Q8WWI1 1683 aa32.11■■■□□ 2.73
C9orf3-213ENST00000471978 LARP1Q6PKG0 1096 aaKnown RBP32.1■■■□□ 2.73
C9orf3-213ENST00000471978 ZNF692Q9BU19 519 aaPredicted RBP32.09■■■□□ 2.73
C9orf3-213ENST00000471978 ZBTB7CA1YPR0 619 aa32.07■■■□□ 2.72
C9orf3-213ENST00000471978 BAG6P46379 1132 aa32.07■■■□□ 2.72
C9orf3-213ENST00000471978 BARGINQ6ZT62 677 aa32.07■■■□□ 2.72
C9orf3-213ENST00000471978 TRIM26Q12899 539 aaPredicted RBP32.06■■■□□ 2.72
C9orf3-213ENST00000471978 SLIT3O75094 1523 aa32.05■■■□□ 2.72
C9orf3-213ENST00000471978 PIK3C2AO00443 1686 aa32.05■■■□□ 2.72
C9orf3-213ENST00000471978 SBNO2Q9Y2G9 1366 aa32.05■■■□□ 2.72
C9orf3-213ENST00000471978 TTC21BQ7Z4L5 1316 aa32.04■■■□□ 2.72
C9orf3-213ENST00000471978 TCP11L2Q8N4U5 519 aa32.04■■■□□ 2.72
C9orf3-213ENST00000471978 COL5A2P05997 1499 aaPredicted RBP32.03■■■□□ 2.72
C9orf3-213ENST00000471978 AKAP12Q02952 1782 aa32.02■■■□□ 2.72
C9orf3-213ENST00000471978 RGPD1P0DJD0 1748 aa32.01■■■□□ 2.72
C9orf3-213ENST00000471978 AATKQ6ZMQ8 1374 aa32.01■■■□□ 2.71
C9orf3-213ENST00000471978 CPSF1Q10570 1443 aaKnown RBP32■■■□□ 2.71
C9orf3-213ENST00000471978 FAM196AQ6ZSG2 479 aa32■■■□□ 2.71
C9orf3-213ENST00000471978 THRAP3Q9Y2W1 955 aaKnown RBP32■■■□□ 2.71
C9orf3-213ENST00000471978 TTC21AQ8NDW8 1320 aa32■■■□□ 2.71
C9orf3-213ENST00000471978 KTN1Q86UP2 1357 aaKnown RBP31.99■■■□□ 2.71
C9orf3-213ENST00000471978 PDE3BQ13370 1112 aa31.99■■■□□ 2.71
C9orf3-213ENST00000471978 EN1Q05925 392 aaPredicted RBP31.97■■■□□ 2.71
C9orf3-213ENST00000471978 CRB1P82279 1406 aa31.96■■■□□ 2.71
C9orf3-213ENST00000471978 KCNH5Q8NCM2 988 aa31.96■■■□□ 2.71
C9orf3-213ENST00000471978 TRIM37O94972 964 aa31.94■■■□□ 2.7
C9orf3-213ENST00000471978 SOX12O15370 315 aa31.93■■■□□ 2.7
C9orf3-213ENST00000471978 ARHGEF25Q86VW2 580 aa31.92■■■□□ 2.7
C9orf3-213ENST00000471978 TMC1Q8TDI8 760 aa31.92■■■□□ 2.7
C9orf3-213ENST00000471978 TNS1Q9HBL0 1735 aaKnown RBP31.92■■■□□ 2.7
C9orf3-213ENST00000471978 DISP2A7MBM2 1401 aa31.92■■■□□ 2.7
C9orf3-213ENST00000471978 AXIN2Q9Y2T1 843 aa31.91■■■□□ 2.7
C9orf3-213ENST00000471978 COL18A1P39060 1754 aa31.91■■■□□ 2.7
C9orf3-213ENST00000471978 MON2Q7Z3U7 1717 aa31.9■■■□□ 2.7
C9orf3-213ENST00000471978 TOM1L2Q6ZVM7 507 aa31.9■■■□□ 2.7
C9orf3-213ENST00000471978 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.9■■■□□ 2.72e-6■□□□□ 9.3
C9orf3-213ENST00000471978 CD163L1Q9NR16 1453 aa31.88■■■□□ 2.69
C9orf3-213ENST00000471978 SLC12A5Q9H2X9 1139 aa31.87■■■□□ 2.69
C9orf3-213ENST00000471978 PARP4Q9UKK3 1724 aaKnown RBP31.86■■■□□ 2.69
C9orf3-213ENST00000471978 WDR17Q8IZU2 1322 aa31.86■■■□□ 2.69
C9orf3-213ENST00000471978 PSDA5PKW4 1024 aaPredicted RBP31.86■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms