RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 PRR20EP86478 221 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 PRR20CP86479 221 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 PRR20DP86480 221 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 PRR20BP86481 221 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 PRR20AP86496 221 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 TUSC1Q2TAM9 212 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 LINC01559Q495D7 138 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 RSPH6AQ9H0K4 717 aa8.55□□□□□ -1.04
VPS13A-210ENST00000471439 CD2BP2O95400 341 aaKnown RBP8.54□□□□□ -1.04
VPS13A-210ENST00000471439 SKIV2LQ15477 1246 aaKnown RBP8.54□□□□□ -1.04
VPS13A-210ENST00000471439 DESI1Q6ICB0 168 aa8.54□□□□□ -1.04
VPS13A-210ENST00000471439 UNC93B1Q9H1C4 597 aa8.54□□□□□ -1.04
VPS13A-210ENST00000471439 LYPD8Q6UX82 237 aa8.53□□□□□ -1.04
VPS13A-210ENST00000471439 FBXO41Q8TF61 875 aa8.53□□□□□ -1.04
VPS13A-210ENST00000471439 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS13A-210ENST00000471439 EVA1BQ9NVM1 165 aa8.53□□□□□ -1.04
VPS13A-210ENST00000471439 F12P00748 615 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-210ENST00000471439 KCNH2Q12809 1159 aa8.52□□□□□ -1.05
VPS13A-210ENST00000471439 MRGPRX2Q96LB1 330 aa8.52□□□□□ -1.05
VPS13A-210ENST00000471439 ATP1B4Q9UN42 357 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-210ENST00000471439 FAM187AA6NFU0 413 aa8.51□□□□□ -1.05
VPS13A-210ENST00000471439 CTHP32929 405 aa8.51□□□□□ -1.05
VPS13A-210ENST00000471439 BAP1Q92560 729 aa8.51□□□□□ -1.05
VPS13A-210ENST00000471439 SH3BP2P78314 561 aa8.5□□□□□ -1.05
VPS13A-210ENST00000471439 CTDSPL2Q05D32 466 aa8.5□□□□□ -1.05
VPS13A-210ENST00000471439 WNT7AO00755 349 aa8.49□□□□□ -1.05
VPS13A-210ENST00000471439 RC3H1Q5TC82 1133 aaKnown RBP8.49□□□□□ -1.05
VPS13A-210ENST00000471439 LRRN4Q8WUT4 740 aa8.49□□□□□ -1.05
VPS13A-210ENST00000471439 TOR4AQ9NXH8 423 aa8.49□□□□□ -1.05
VPS13A-210ENST00000471439 SMARCA2P51531 1590 aa8.48□□□□□ -1.05
VPS13A-210ENST00000471439 J3QL48 77 aa8.47□□□□□ -1.05
VPS13A-210ENST00000471439 HELBQ8NG08 1087 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-210ENST00000471439 ST8SIA5O15466 376 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 WNT7BP56706 349 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 PKDCCQ504Y2 493 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 TRAF7Q6Q0C0 670 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 CYP4X1Q8N118 509 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 ZNF511Q8NB15 262 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 TLL2Q9Y6L7 1015 aa8.46□□□□□ -1.06
VPS13A-210ENST00000471439 MYT1Q01538 1121 aa8.45□□□□□ -1.06
VPS13A-210ENST00000471439 PPP2R2DQ66LE6 453 aa8.45□□□□□ -1.06
VPS13A-210ENST00000471439 FOXJ1Q92949 421 aa8.45□□□□□ -1.06
VPS13A-210ENST00000471439 HMX1Q9NP08 348 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-210ENST00000471439 TTC24A2A3L6 582 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-210ENST00000471439 AP1G2O75843 785 aa8.44□□□□□ -1.06
VPS13A-210ENST00000471439 SMPD1P17405 629 aa8.44□□□□□ -1.06
VPS13A-210ENST00000471439 RFC5P40937 340 aa8.44□□□□□ -1.06
VPS13A-210ENST00000471439 EHBP1Q8NDI1 1231 aa8.44□□□□□ -1.06
VPS13A-210ENST00000471439 C4orf48Q5BLP8 95 aa8.43□□□□□ -1.06
VPS13A-210ENST00000471439 EPS8L1Q8TE68 723 aa8.43□□□□□ -1.06
VPS13A-210ENST00000471439 PCMTD1Q96MG8 357 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-210ENST00000471439 SIAH2O43255 324 aa8.42□□□□□ -1.06
VPS13A-210ENST00000471439 DGAT1O75907 488 aa8.42□□□□□ -1.06
VPS13A-210ENST00000471439 USP17L8P0C7I0 530 aa8.42□□□□□ -1.06
VPS13A-210ENST00000471439 SNIP1Q8TAD8 396 aaKnown RBP8.42□□□□□ -1.06
VPS13A-210ENST00000471439 MYO15BQ96JP2 1530 aa8.42□□□□□ -1.06
VPS13A-210ENST00000471439 KIF21AQ7Z4S6 1674 aa8.41□□□□□ -1.06
VPS13A-210ENST00000471439 ERCC6L2Q5T890 1561 aa8.41□□□□□ -1.06
VPS13A-210ENST00000471439 ARAP1Q96P48 1450 aa8.41□□□□□ -1.06
VPS13A-210ENST00000471439 NR6A1Q15406 480 aa8.41□□□□□ -1.06
VPS13A-210ENST00000471439 HPS1Q92902 700 aa8.41□□□□□ -1.06
VPS13A-210ENST00000471439 SCRIBQ14160 1630 aa8.4□□□□□ -1.06
VPS13A-210ENST00000471439 ALDH1A1P00352 501 aa8.4□□□□□ -1.06
VPS13A-210ENST00000471439 GOPCQ9HD26 462 aa8.4□□□□□ -1.06
VPS13A-210ENST00000471439 DACH1Q9UI36 760 aa8.4□□□□□ -1.06
VPS13A-210ENST00000471439 AAASQ9NRG9 546 aa8.39□□□□□ -1.07
VPS13A-210ENST00000471439 DISP3Q9P2K9 1392 aa8.38□□□□□ -1.07
VPS13A-210ENST00000471439 POTECB2RU33 542 aa8.38□□□□□ -1.07
VPS13A-210ENST00000471439 AVPP01185 164 aa8.37□□□□□ -1.07
VPS13A-210ENST00000471439 AGERQ15109 404 aa8.36□□□□□ -1.07
VPS13A-210ENST00000471439 CARD14Q9BXL6 1004 aa8.36□□□□□ -1.07
VPS13A-210ENST00000471439 MAGEB6P1A0A0J9YX57 407 aa8.35□□□□□ -1.07
VPS13A-210ENST00000471439 VARSP26640 1264 aaKnown RBP8.35□□□□□ -1.07
VPS13A-210ENST00000471439 SH3BP5LQ7L8J4 393 aa8.35□□□□□ -1.07
VPS13A-210ENST00000471439 SH3RF1Q7Z6J0 888 aa8.35□□□□□ -1.07
VPS13A-210ENST00000471439 TRIM34Q9BYJ4 488 aa8.35□□□□□ -1.07
VPS13A-210ENST00000471439 OCSTAMPQ9BR26 566 aa8.34□□□□□ -1.07
VPS13A-210ENST00000471439 ARID5BQ14865 1188 aa8.33□□□□□ -1.08
VPS13A-210ENST00000471439 NBPF14Q5TI25 921 aa8.33□□□□□ -1.08
VPS13A-210ENST00000471439 BPHLQ86WA6 291 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-210ENST00000471439 CRIPAKQ8N1N5 446 aa8.33□□□□□ -1.08
VPS13A-210ENST00000471439 FKBPLQ9UIM3 349 aa8.33□□□□□ -1.08
VPS13A-210ENST00000471439 AXIN1O15169 862 aa8.32□□□□□ -1.08
VPS13A-210ENST00000471439 ARMC2Q8NEN0 867 aa8.32□□□□□ -1.08
VPS13A-210ENST00000471439 GJD4Q96KN9 370 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-210ENST00000471439 C1QTNF2Q9BXJ5 285 aa8.32□□□□□ -1.08
VPS13A-210ENST00000471439 WASF2Q9Y6W5 498 aa8.32□□□□□ -1.08
VPS13A-210ENST00000471439 HECW2Q9P2P5 1572 aa8.31□□□□□ -1.08
VPS13A-210ENST00000471439 NR3C2P08235 984 aa8.31□□□□□ -1.08
VPS13A-210ENST00000471439 NNTQ13423 1086 aa8.31□□□□□ -1.08
VPS13A-210ENST00000471439 FAM174AQ8TBP5 190 aa8.31□□□□□ -1.08
VPS13A-210ENST00000471439 BMP1P13497 986 aa8.3□□□□□ -1.08
VPS13A-210ENST00000471439 ERFEQ4G0M1 354 aa8.3□□□□□ -1.08
VPS13A-210ENST00000471439 MTMR14Q8NCE2 650 aa8.3□□□□□ -1.08
VPS13A-210ENST00000471439 SNRKQ9NRH2 765 aa8.3□□□□□ -1.08
VPS13A-210ENST00000471439 GPR37L1O60883 481 aa8.29□□□□□ -1.08
VPS13A-210ENST00000471439 ADH1CP00326 375 aa8.29□□□□□ -1.08
VPS13A-210ENST00000471439 SMCPP49901 116 aaPredicted RBP8.29□□□□□ -1.08
VPS13A-210ENST00000471439 CTC1Q2NKJ3 1217 aa8.29□□□□□ -1.08
VPS13A-210ENST00000471439 ARHGAP9Q9BRR9 750 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms