RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 AHDC1Q5TGY3 1603 aaPredicted RBP13.65□□□□□ -0.22
SF3A1-207ENST00000471342 FBLN1P23142 703 aa13.65□□□□□ -0.22
SF3A1-207ENST00000471342 KRT28Q7Z3Y7 464 aa13.65□□□□□ -0.22
SF3A1-207ENST00000471342 TERF2IPQ9NYB0 399 aa13.65□□□□□ -0.22
SF3A1-207ENST00000471342 NHSL1Q5SYE7 1610 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 PIK3C2AO00443 1686 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 KIF1AQ12756 1690 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 SBNO1A3KN83 1393 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 BRD4O60885 1362 aaPredicted RBP13.64□□□□□ -0.23
SF3A1-207ENST00000471342 CCDC184Q52MB2 194 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 DIEXFQ68CQ4 756 aaKnown RBP13.64□□□□□ -0.23
SF3A1-207ENST00000471342 PRKRIP1Q9H875 184 aaPredicted RBP13.64□□□□□ -0.23
SF3A1-207ENST00000471342 ITSN1Q15811 1721 aa13.64□□□□□ -0.23
SF3A1-207ENST00000471342 ROBO1Q9Y6N7 1651 aa13.63□□□□□ -0.23
SF3A1-207ENST00000471342 NGDNQ8NEJ9 315 aaKnown RBP13.63□□□□□ -0.23
SF3A1-207ENST00000471342 SPATA31A3Q5VYP0 1347 aa13.63□□□□□ -0.23
SF3A1-207ENST00000471342 USP54Q70EL1 1684 aa13.63□□□□□ -0.23
SF3A1-207ENST00000471342 ALS2Q96Q42 1657 aa13.63□□□□□ -0.23
SF3A1-207ENST00000471342 MED1Q15648 1581 aaPredicted RBP13.62□□□□□ -0.23
SF3A1-207ENST00000471342 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
SF3A1-207ENST00000471342 MIER1Q8N108 512 aa13.62□□□□□ -0.23
SF3A1-207ENST00000471342 GGNBP2Q9H3C7 697 aa13.62□□□□□ -0.23
SF3A1-207ENST00000471342 USP19O94966 1318 aa13.62□□□□□ -0.23
SF3A1-207ENST00000471342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.61□□□□□ -0.23
SF3A1-207ENST00000471342 NPHP3Q7Z494 1330 aa13.61□□□□□ -0.23
SF3A1-207ENST00000471342 TTC21AQ8NDW8 1320 aa13.61□□□□□ -0.23
SF3A1-207ENST00000471342 COL16A1Q07092 1604 aaPredicted RBP13.61□□□□□ -0.23
SF3A1-207ENST00000471342 UBAP1LF5GYI3 381 aa13.6□□□□□ -0.23
SF3A1-207ENST00000471342 TOM1O60784 492 aa13.6□□□□□ -0.23
SF3A1-207ENST00000471342 SLIT3O75094 1523 aa13.59□□□□□ -0.23
SF3A1-207ENST00000471342 CC2D1BQ5T0F9 858 aaKnown RBP13.59□□□□□ -0.23
SF3A1-207ENST00000471342 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
SF3A1-207ENST00000471342 CRYBG1Q9Y4K1 1723 aa13.59□□□□□ -0.23
SF3A1-207ENST00000471342 NSD2O96028 1365 aa13.58□□□□□ -0.23
SF3A1-207ENST00000471342 PSME1Q06323 249 aa13.58□□□□□ -0.24
SF3A1-207ENST00000471342 KNSTRNQ9Y448 316 aa13.58□□□□□ -0.24
SF3A1-207ENST00000471342 NFAT5O94916 1531 aa13.58□□□□□ -0.24
SF3A1-207ENST00000471342 SCAF1Q9H7N4 1312 aaKnown RBP13.58□□□□□ -0.24
SF3A1-207ENST00000471342 TNS3Q68CZ2 1445 aa13.57□□□□□ -0.24
SF3A1-207ENST00000471342 PNPLA6Q8IY17 1366 aa13.57□□□□□ -0.24
SF3A1-207ENST00000471342 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
SF3A1-207ENST00000471342 PPP2R1AP30153 589 aa13.56□□□□□ -0.24
SF3A1-207ENST00000471342 PIP4K2BP78356 416 aa13.56□□□□□ -0.24
SF3A1-207ENST00000471342 POLKQ9UBT6 870 aa13.56□□□□□ -0.24
SF3A1-207ENST00000471342 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
SF3A1-207ENST00000471342 NUTM2GQ5VZR2 741 aa13.55□□□□□ -0.24
SF3A1-207ENST00000471342 COL3A1P02461 1466 aaPredicted RBP13.55□□□□□ -0.24
SF3A1-207ENST00000471342 ABTB2Q8N961 1025 aa13.54□□□□□ -0.24
SF3A1-207ENST00000471342 INSRP06213 1382 aa13.54□□□□□ -0.24
SF3A1-207ENST00000471342 HSPA1LP34931 641 aa13.53□□□□□ -0.24
SF3A1-207ENST00000471342 RALBP1Q15311 655 aa13.53□□□□□ -0.24
SF3A1-207ENST00000471342 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
SF3A1-207ENST00000471342 COL22A1Q8NFW1 1626 aaPredicted RBP13.53□□□□□ -0.24
SF3A1-207ENST00000471342 PEAK1Q9H792 1746 aa13.53□□□□□ -0.24
SF3A1-207ENST00000471342 ANKRD26Q9UPS8 1709 aa13.53□□□□□ -0.24
SF3A1-207ENST00000471342 GCP02774 474 aa13.52□□□□□ -0.25
SF3A1-207ENST00000471342 NLRP6P59044 892 aa13.52□□□□□ -0.25
SF3A1-207ENST00000471342 ARHGEF25Q86VW2 580 aa13.52□□□□□ -0.25
SF3A1-207ENST00000471342 KIF20BQ96Q89 1820 aa13.51□□□□□ -0.25
SF3A1-207ENST00000471342 MAP3K19Q56UN5 1328 aa13.51□□□□□ -0.25
SF3A1-207ENST00000471342 EMILIN1Q9Y6C2 1016 aa13.51□□□□□ -0.25
SF3A1-207ENST00000471342 MYBBP1AQ9BQG0 1328 aaKnown RBP13.5□□□□□ -0.25
SF3A1-207ENST00000471342 PAK3O75914 559 aaPredicted RBP13.5□□□□□ -0.25
SF3A1-207ENST00000471342 RRS1Q15050 365 aaKnown RBP13.5□□□□□ -0.25
SF3A1-207ENST00000471342 MORC1Q86VD1 984 aa13.5□□□□□ -0.25
SF3A1-207ENST00000471342 AXIN2Q9Y2T1 843 aa13.5□□□□□ -0.25
SF3A1-207ENST00000471342 ARHGEF10O15013 1369 aa13.49□□□□□ -0.25
SF3A1-207ENST00000471342 MTHFSP49914 203 aa13.49□□□□□ -0.25
SF3A1-207ENST00000471342 CNGB1Q14028 1251 aaPredicted RBP13.49□□□□□ -0.25
SF3A1-207ENST00000471342 NLRP13Q86W25 1043 aa13.49□□□□□ -0.25
SF3A1-207ENST00000471342 LRRC59Q96AG4 307 aaKnown RBP13.49□□□□□ -0.25
SF3A1-207ENST00000471342 COG3Q96JB2 828 aa13.49□□□□□ -0.25
SF3A1-207ENST00000471342 COL18A1P39060 1754 aa13.49□□□□□ -0.25
SF3A1-207ENST00000471342 CPDO75976 1380 aa13.48□□□□□ -0.25
SF3A1-207ENST00000471342 TNNT2P45379 298 aaPredicted RBP13.48□□□□□ -0.25
SF3A1-207ENST00000471342 PHRF1Q9P1Y6 1649 aaKnown RBP13.48□□□□□ -0.25
SF3A1-207ENST00000471342 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
SF3A1-207ENST00000471342 ABCA3Q99758 1704 aa13.47□□□□□ -0.25
SF3A1-207ENST00000471342 LRP6O75581 1613 aa13.47□□□□□ -0.25
SF3A1-207ENST00000471342 CCER2I3L3R5 266 aa13.47□□□□□ -0.25
SF3A1-207ENST00000471342 ANP32CO43423 234 aa13.47□□□□□ -0.25
SF3A1-207ENST00000471342 IL13P35225 146 aa13.46□□□□□ -0.25
SF3A1-207ENST00000471342 PNISRQ8TF01 805 aaKnown RBP13.46□□□□□ -0.25
SF3A1-207ENST00000471342 FAM83GA6ND36 823 aa13.45□□□□□ -0.26
SF3A1-207ENST00000471342 HSP90AB2PQ58FF8 381 aa13.45□□□□□ -0.26
SF3A1-207ENST00000471342 LMO7Q8WWI1 1683 aa13.44□□□□□ -0.26
SF3A1-207ENST00000471342 HOXC9P31274 260 aa13.44□□□□□ -0.26
SF3A1-207ENST00000471342 KIAA0232Q92628 1395 aa13.44□□□□□ -0.26
SF3A1-207ENST00000471342 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
SF3A1-207ENST00000471342 CDK12Q9NYV4 1490 aaPredicted RBP13.43□□□□□ -0.26
SF3A1-207ENST00000471342 NCAPD2Q15021 1401 aa13.43□□□□□ -0.26
SF3A1-207ENST00000471342 IP6K1Q92551 441 aa13.43□□□□□ -0.26
SF3A1-207ENST00000471342 SHPRHQ149N8 1683 aa13.43□□□□□ -0.26
SF3A1-207ENST00000471342 JCADQ9P266 1359 aa13.43□□□□□ -0.26
SF3A1-207ENST00000471342 ZC3H6P61129 1189 aaKnown RBP13.42□□□□□ -0.26
SF3A1-207ENST00000471342 KCNH5Q8NCM2 988 aa13.42□□□□□ -0.26
SF3A1-207ENST00000471342 KIF24Q5T7B8 1368 aa13.42□□□□□ -0.26
SF3A1-207ENST00000471342 SOX12O15370 315 aa13.41□□□□□ -0.26
SF3A1-207ENST00000471342 EIF4A2Q14240 407 aaKnown RBP13.41□□□□□ -0.26
SF3A1-207ENST00000471342 LMOD2Q6P5Q4 547 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms