RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 TSC1Q92574 1164 aa10.24□□□□□ -0.77
CKS1B-204ENST00000471245 CALR3Q96L12 384 aaKnown RBP10.24□□□□□ -0.77
CKS1B-204ENST00000471245 IRX2Q9BZI1 471 aaPredicted RBP10.24□□□□□ -0.77
CKS1B-204ENST00000471245 POM121CA8CG34 1229 aa10.23□□□□□ -0.77
CKS1B-204ENST00000471245 TLL1O43897 1013 aa10.23□□□□□ -0.77
CKS1B-204ENST00000471245 DXOO77932 396 aaKnown RBP10.23□□□□□ -0.77
CKS1B-204ENST00000471245 JUNDP17535 347 aa10.22□□□□□ -0.77
CKS1B-204ENST00000471245 PDIA4P13667 645 aaKnown RBP10.2□□□□□ -0.78
CKS1B-204ENST00000471245 LYPD8Q6UX82 237 aa10.2□□□□□ -0.78
CKS1B-204ENST00000471245 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.2□□□□□ -0.78
CKS1B-204ENST00000471245 CC2D2AQ9P2K1 1620 aa10.19□□□□□ -0.78
CKS1B-204ENST00000471245 PPP1R18Q6NYC8 613 aa10.19□□□□□ -0.78
CKS1B-204ENST00000471245 A0A0G2JS52 829 aa10.18□□□□□ -0.78
CKS1B-204ENST00000471245 PPP1R15AO75807 674 aaPredicted RBP10.18□□□□□ -0.78
CKS1B-204ENST00000471245 S1PR4O95977 384 aa10.18□□□□□ -0.78
CKS1B-204ENST00000471245 PTPRNQ16849 979 aa10.18□□□□□ -0.78
CKS1B-204ENST00000471245 ANKLE1Q8NAG6 615 aa10.18□□□□□ -0.78
CKS1B-204ENST00000471245 MYO15BQ96JP2 1530 aa10.17□□□□□ -0.78
CKS1B-204ENST00000471245 RNF223E7ERA6 249 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 PER1O15534 1290 aaPredicted RBP10.16□□□□□ -0.78
CKS1B-204ENST00000471245 SOX11P35716 441 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 PNMA1Q8ND90 353 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 ADAMTS19Q8TE59 1207 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 EPS8L1Q8TE68 723 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 CECR2Q9BXF3 1484 aa10.16□□□□□ -0.78
CKS1B-204ENST00000471245 NR6A1Q15406 480 aa10.15□□□□□ -0.78
CKS1B-204ENST00000471245 HDGFL1Q5TGJ6 251 aa10.15□□□□□ -0.78
CKS1B-204ENST00000471245 EVA1BQ9NVM1 165 aa10.15□□□□□ -0.78
CKS1B-204ENST00000471245 VAC14Q08AM6 782 aa10.14□□□□□ -0.79
CKS1B-204ENST00000471245 TRIM26Q12899 539 aaPredicted RBP10.14□□□□□ -0.79
CKS1B-204ENST00000471245 PRDM9Q9NQV7 894 aa10.14□□□□□ -0.79
CKS1B-204ENST00000471245 PODXL2Q9NZ53 605 aa10.14□□□□□ -0.79
CKS1B-204ENST00000471245 NUDT12Q9BQG2 462 aa10.13□□□□□ -0.79
CKS1B-204ENST00000471245 TRAIPQ9BWF2 469 aa10.13□□□□□ -0.79
CKS1B-204ENST00000471245 CCNYL3P0C7X3 344 aa10.12□□□□□ -0.79
CKS1B-204ENST00000471245 ALG2Q9H553 416 aa10.12□□□□□ -0.79
CKS1B-204ENST00000471245 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
CKS1B-204ENST00000471245 F12P00748 615 aaPredicted RBP10.1□□□□□ -0.79
CKS1B-204ENST00000471245 KCNH2Q12809 1159 aa10.1□□□□□ -0.79
CKS1B-204ENST00000471245 FCF1Q9Y324 198 aaKnown RBP10.1□□□□□ -0.79
CKS1B-204ENST00000471245 ZC3H4Q9UPT8 1303 aaKnown RBP10.09□□□□□ -0.79
CKS1B-204ENST00000471245 RPIAP49247 311 aa10.09□□□□□ -0.79
CKS1B-204ENST00000471245 RETREG2Q8NC44 543 aa10.09□□□□□ -0.79
CKS1B-204ENST00000471245 PBXIP1Q96AQ6 731 aa10.09□□□□□ -0.79
CKS1B-204ENST00000471245 PPEF1O14829 653 aaPredicted RBP10.08□□□□□ -0.8
CKS1B-204ENST00000471245 CFAP70Q5T0N1 1121 aa10.08□□□□□ -0.8
CKS1B-204ENST00000471245 PPP1R12CQ9BZL4 782 aa10.08□□□□□ -0.8
CKS1B-204ENST00000471245 EIF4G1Q04637 1599 aaKnown RBP10.08□□□□□ -0.8
CKS1B-204ENST00000471245 FKBPLQ9UIM3 349 aa10.07□□□□□ -0.8
CKS1B-204ENST00000471245 ZBTB7CA1YPR0 619 aa10.06□□□□□ -0.8
CKS1B-204ENST00000471245 EIF4G2P78344 907 aaKnown RBP eCLIP10.06□□□□□ -0.8
CKS1B-204ENST00000471245 PDE4CQ08493 712 aa10.06□□□□□ -0.8
CKS1B-204ENST00000471245 NR1H3Q13133 447 aa10.06□□□□□ -0.8
CKS1B-204ENST00000471245 V9GY48 417 aaPredicted RBP10.06□□□□□ -0.8
CKS1B-204ENST00000471245 ACIN1Q9UKV3 1341 aaKnown RBP10.06□□□□□ -0.8
CKS1B-204ENST00000471245 ZBTB24O43167 697 aaPredicted RBP10.05□□□□□ -0.8
CKS1B-204ENST00000471245 SEMA3FQ13275 785 aa10.05□□□□□ -0.8
CKS1B-204ENST00000471245 CCDC24Q8N4L8 307 aa10.05□□□□□ -0.8
CKS1B-204ENST00000471245 KCTD17Q8N5Z5 321 aa10.05□□□□□ -0.8
CKS1B-204ENST00000471245 ARMC2Q8NEN0 867 aa10.05□□□□□ -0.8
CKS1B-204ENST00000471245 UCN2Q96RP3 112 aa10.05□□□□□ -0.8
CKS1B-204ENST00000471245 CD2BP2O95400 341 aaKnown RBP10.04□□□□□ -0.8
CKS1B-204ENST00000471245 PALM3A6NDB9 673 aaPredicted RBP10.03□□□□□ -0.8
CKS1B-204ENST00000471245 ZBBXA8MT70 800 aa10.03□□□□□ -0.8
CKS1B-204ENST00000471245 CTHP32929 405 aa10.03□□□□□ -0.8
CKS1B-204ENST00000471245 SLC19A1P41440 591 aa10.03□□□□□ -0.8
CKS1B-204ENST00000471245 PLA2G2CQ5R387 149 aa10.03□□□□□ -0.8
CKS1B-204ENST00000471245 PTCRAQ6ISU1 281 aaPredicted RBP10.03□□□□□ -0.8
CKS1B-204ENST00000471245 GPKOWQ92917 476 aaPredicted RBP eCLIP10.03□□□□□ -0.8
CKS1B-204ENST00000471245 FBXO45P0C2W1 286 aa10.02□□□□□ -0.81
CKS1B-204ENST00000471245 SRPK2P78362 688 aaKnown RBP10.02□□□□□ -0.81
CKS1B-204ENST00000471245 UNC93B1Q9H1C4 597 aa10.02□□□□□ -0.81
CKS1B-204ENST00000471245 MAP10Q9P2G4 905 aa10.02□□□□□ -0.81
CKS1B-204ENST00000471245 LIAT1Q6ZQX7 453 aa10.01□□□□□ -0.81
CKS1B-204ENST00000471245 EMID1Q96A84 441 aaPredicted RBP10.01□□□□□ -0.81
CKS1B-204ENST00000471245 USTQ9Y2C2 406 aa10.01□□□□□ -0.81
CKS1B-204ENST00000471245 GPSM3Q9Y4H4 160 aa10.01□□□□□ -0.81
CKS1B-204ENST00000471245 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10□□□□□ -0.81
CKS1B-204ENST00000471245 RFX1P22670 979 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 WNT7BP56706 349 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 TRIM32Q13049 653 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 SPRYD7Q5W111 196 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 ZNF592Q92610 1267 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 TFIP11Q9UBB9 837 aaKnown RBP9.99□□□□□ -0.81
CKS1B-204ENST00000471245 MAFBQ9Y5Q3 323 aaPredicted RBP9.99□□□□□ -0.81
CKS1B-204ENST00000471245 SCRIBQ14160 1630 aa9.99□□□□□ -0.81
CKS1B-204ENST00000471245 NFATC2IPQ8NCF5 419 aa9.98□□□□□ -0.81
CKS1B-204ENST00000471245 PRKD2Q9BZL6 878 aa9.98□□□□□ -0.81
CKS1B-204ENST00000471245 ATP9BO43861 1147 aa9.97□□□□□ -0.81
CKS1B-204ENST00000471245 LMOD1P29536 600 aaPredicted RBP9.97□□□□□ -0.81
CKS1B-204ENST00000471245 NBPF14Q5TI25 921 aa9.97□□□□□ -0.81
CKS1B-204ENST00000471245 PDXDC2PQ6P474 469 aa9.97□□□□□ -0.81
CKS1B-204ENST00000471245 ZNF598Q86UK7 904 aaKnown RBP9.97□□□□□ -0.81
CKS1B-204ENST00000471245 CSB-PGBD3P0DP91 1061 aa9.95□□□□□ -0.82
CKS1B-204ENST00000471245 MCCD1P59942 119 aaPredicted RBP9.95□□□□□ -0.82
CKS1B-204ENST00000471245 PTK2Q05397 1052 aa9.95□□□□□ -0.82
CKS1B-204ENST00000471245 TBC1D9Q6ZT07 1266 aa9.95□□□□□ -0.82
CKS1B-204ENST00000471245 BAP1Q92560 729 aa9.95□□□□□ -0.82
CKS1B-204ENST00000471245 DCAF1Q9Y4B6 1507 aa9.94□□□□□ -0.82
CKS1B-204ENST00000471245 ATG7O95352 703 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms