RNA–Protein interactions for RNA: ENST00000470951.5

SRGAP3-204, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 2,334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-204ENST00000470951 CFAP74Q9C0B2 1584 aa14.24□□□□□ -0.13
SRGAP3-204ENST00000470951 IFT172Q9UG01 1749 aa14.24□□□□□ -0.13
SRGAP3-204ENST00000470951 GTF2E1P29083 439 aaPredicted RBP14.24□□□□□ -0.13
SRGAP3-204ENST00000470951 TRAPPC8Q9Y2L5 1435 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 KIF1BO60333 1816 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 VWDEQ8N2E2 1590 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 HDAC1Q13547 482 aaPredicted RBP14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 TCP11L2Q8N4U5 519 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 PDCL3Q9H2J4 239 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 HSCBQ8IWL3 235 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 BBXQ8WY36 941 aaPredicted RBP14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 GRPEL1Q9HAV7 217 aa14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 CIZ1Q9ULV3 898 aaPredicted RBP14.23□□□□□ -0.13
SRGAP3-204ENST00000470951 ZKSCAN2Q63HK3 967 aa14.22□□□□□ -0.13
SRGAP3-204ENST00000470951 ARID3AQ99856 593 aa14.22□□□□□ -0.13
SRGAP3-204ENST00000470951 PANK2Q9BZ23 570 aa14.22□□□□□ -0.13
SRGAP3-204ENST00000470951 SETBP1Q9Y6X0 1596 aa14.21□□□□□ -0.13
SRGAP3-204ENST00000470951 SNX21Q969T3 373 aa14.21□□□□□ -0.13
SRGAP3-204ENST00000470951 ZNF518AQ6AHZ1 1483 aa14.21□□□□□ -0.14
SRGAP3-204ENST00000470951 ADGRB2O60241 1585 aa14.21□□□□□ -0.14
SRGAP3-204ENST00000470951 DDIT3P35638 169 aa14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 SKOR2Q2VWA4 1001 aaPredicted RBP14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 MORC1Q86VD1 984 aa14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 GZF1Q9H116 711 aaPredicted RBP14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 NRXN1Q9ULB1 1477 aa14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 ZC3H13Q5T200 1668 aaKnown RBP14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 DZIP1LQ8IYY4 767 aaKnown RBP14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 CFAP53Q96M91 514 aa14.2□□□□□ -0.14
SRGAP3-204ENST00000470951 ZFYVE16Q7Z3T8 1539 aa14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 ESPNB1AK53 854 aa14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 POGZQ7Z3K3 1410 aa14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 NSD3Q9BZ95 1437 aa14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 HMGB1P09429 215 aaKnown RBP14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 RBM25P49756 843 aaKnown RBP14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 FTSJ3Q8IY81 847 aaKnown RBP14.19□□□□□ -0.14
SRGAP3-204ENST00000470951 FRMPD1Q5SYB0 1578 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 MFAP1P55081 439 aaKnown RBP14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 DDX19BQ9UMR2 479 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 RICTORQ6R327 1708 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 SMC5Q8IY18 1101 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 GBP4Q96PP9 640 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 TNNQ9UQP3 1299 aa14.18□□□□□ -0.14
SRGAP3-204ENST00000470951 NEUROD2Q15784 382 aa14.17□□□□□ -0.14
SRGAP3-204ENST00000470951 SPRYD3Q8NCJ5 442 aa14.17□□□□□ -0.14
SRGAP3-204ENST00000470951 SPAG9O60271 1321 aaKnown RBP14.17□□□□□ -0.14
SRGAP3-204ENST00000470951 INO80Q9ULG1 1556 aaPredicted RBP14.17□□□□□ -0.14
SRGAP3-204ENST00000470951 CFAP70Q5T0N1 1121 aa14.16□□□□□ -0.14
SRGAP3-204ENST00000470951 NSD2O96028 1365 aa14.16□□□□□ -0.14
SRGAP3-204ENST00000470951 TRIM44Q96DX7 344 aaPredicted RBP14.16□□□□□ -0.14
SRGAP3-204ENST00000470951 RRP7AQ9Y3A4 280 aaKnown RBP14.16□□□□□ -0.14
SRGAP3-204ENST00000470951 BCL2L13Q9BXK5 485 aa14.15□□□□□ -0.14
SRGAP3-204ENST00000470951 QRICH2Q9H0J4 1663 aa14.15□□□□□ -0.14
SRGAP3-204ENST00000470951 TPM2P07951 284 aa14.15□□□□□ -0.14
SRGAP3-204ENST00000470951 CHMP4BQ9H444 224 aaKnown RBP14.15□□□□□ -0.14
SRGAP3-204ENST00000470951 NECTIN2Q92692 538 aa14.14□□□□□ -0.15
SRGAP3-204ENST00000470951 PUS7Q96PZ0 661 aaKnown RBP14.14□□□□□ -0.15
SRGAP3-204ENST00000470951 RAB3GAP1Q15042 981 aa14.13□□□□□ -0.15
SRGAP3-204ENST00000470951 ADGRF5Q8IZF2 1346 aa14.13□□□□□ -0.15
SRGAP3-204ENST00000470951 YEATS2Q9ULM3 1422 aa14.13□□□□□ -0.15
SRGAP3-204ENST00000470951 ABCC11Q96J66 1382 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 IBTKQ9P2D0 1353 aaPredicted RBP14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 KIF16BQ96L93 1317 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 TNPO1Q92973 898 aaKnown RBP14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 IL16Q14005 1332 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 MTHFSP49914 203 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 ATF7IPQ6VMQ6 1270 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 SMC4Q9NTJ3 1288 aa14.12□□□□□ -0.15
SRGAP3-204ENST00000470951 MROH2AA6NES4 1674 aa14.11□□□□□ -0.15
SRGAP3-204ENST00000470951 TRIM27P14373 513 aa14.11□□□□□ -0.15
SRGAP3-204ENST00000470951 ATP7AQ04656 1500 aa14.11□□□□□ -0.15
SRGAP3-204ENST00000470951 EFCAB6Q5THR3 1501 aa14.11□□□□□ -0.15
SRGAP3-204ENST00000470951 REREQ9P2R6 1566 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 NUCB1Q02818 461 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 CCDC173Q0VFZ6 552 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 CLEC17AQ6ZS10 378 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 KIDINS220Q9ULH0 1771 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 MROH1Q8NDA8 1641 aa14.1□□□□□ -0.15
SRGAP3-204ENST00000470951 HECW2Q9P2P5 1572 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 ERBB4Q15303 1308 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 IPO8O15397 1037 aaKnown RBP14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 HSP90AB1P08238 724 aaKnown RBP14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 NCLP19338 710 aaKnown RBP14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 ITPRIPQ8IWB1 547 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 ADGRB3O60242 1522 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 ZBTB7CA1YPR0 619 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 BMP2KLQ5H9B9 411 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 ZBTB40Q9NUA8 1239 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 NOS1P29475 1434 aa14.09□□□□□ -0.15
SRGAP3-204ENST00000470951 PPP1R9BQ96SB3 815 aa14.08□□□□□ -0.16
SRGAP3-204ENST00000470951 PPLO60437 1756 aa14.08□□□□□ -0.16
SRGAP3-204ENST00000470951 ARHGAP31Q2M1Z3 1444 aa14.08□□□□□ -0.16
SRGAP3-204ENST00000470951 MLH3Q9UHC1 1453 aa14.08□□□□□ -0.16
SRGAP3-204ENST00000470951 GOLGA6L22H0YM25 854 aa14.08□□□□□ -0.16
SRGAP3-204ENST00000470951 UGGT1Q9NYU2 1555 aa14.07□□□□□ -0.16
SRGAP3-204ENST00000470951 U2AF1L5P0DN76 240 aaPredicted RBP14.07□□□□□ -0.16
SRGAP3-204ENST00000470951 TNNT2P45379 298 aaPredicted RBP14.07□□□□□ -0.16
SRGAP3-204ENST00000470951 TERF1P54274 439 aa14.07□□□□□ -0.16
SRGAP3-204ENST00000470951 U2AF1Q01081 240 aaKnown RBP eCLIP14.07□□□□□ -0.16
SRGAP3-204ENST00000470951 SMAP1Q8IYB5 467 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms