RNA–Protein interactions for RNA: ENST00000470606.5

GTF3A-206, Transcript of general transcription factor IIIA, humanhuman

TSL 2

Gene GTF3A, Length 1,919 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-206ENST00000470606 SHPRHQ149N8 1683 aa11.23□□□□□ -0.61
GTF3A-206ENST00000470606 MTHFSP49914 203 aa11.23□□□□□ -0.61
GTF3A-206ENST00000470606 MAP2P11137 1827 aaKnown RBP11.23□□□□□ -0.61
GTF3A-206ENST00000470606 ZNF335Q9H4Z2 1342 aaPredicted RBP11.22□□□□□ -0.61
GTF3A-206ENST00000470606 ZNF692Q9BU19 519 aaPredicted RBP11.22□□□□□ -0.61
GTF3A-206ENST00000470606 ADAMTS8Q9UP79 889 aa11.22□□□□□ -0.61
GTF3A-206ENST00000470606 TTC21BQ7Z4L5 1316 aa11.21□□□□□ -0.61
GTF3A-206ENST00000470606 ORAI2Q96SN7 254 aa11.21□□□□□ -0.62
GTF3A-206ENST00000470606 MARF1Q9Y4F3 1742 aaKnown RBP11.2□□□□□ -0.62
GTF3A-206ENST00000470606 C14orf37Q86TY3 774 aa11.2□□□□□ -0.62
GTF3A-206ENST00000470606 PIK3C2AO00443 1686 aa11.2□□□□□ -0.62
GTF3A-206ENST00000470606 BLMP54132 1417 aaPredicted RBP11.19□□□□□ -0.62
GTF3A-206ENST00000470606 C19orf44Q9H6X5 657 aa11.19□□□□□ -0.62
GTF3A-206ENST00000470606 COL3A1P02461 1466 aaPredicted RBP11.19□□□□□ -0.62
GTF3A-206ENST00000470606 NGDNQ8NEJ9 315 aaKnown RBP11.19□□□□□ -0.62
GTF3A-206ENST00000470606 PHF8Q9UPP1 1060 aa11.19□□□□□ -0.62
GTF3A-206ENST00000470606 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
GTF3A-206ENST00000470606 OVOS2A0A0J9YW53 1432 aa11.18□□□□□ -0.62
GTF3A-206ENST00000470606 OVOS2Q6IE36 1432 aa11.18□□□□□ -0.62
GTF3A-206ENST00000470606 POLKQ9UBT6 870 aa11.18□□□□□ -0.62
GTF3A-206ENST00000470606 ZBED9Q6R2W3 1325 aa11.18□□□□□ -0.62
GTF3A-206ENST00000470606 C1orf167Q5SNV9 1468 aa11.18□□□□□ -0.62
GTF3A-206ENST00000470606 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
GTF3A-206ENST00000470606 PNPLA6Q8IY17 1366 aa11.17□□□□□ -0.62
GTF3A-206ENST00000470606 MST1RQ04912 1400 aa11.17□□□□□ -0.62
GTF3A-206ENST00000470606 EMILIN1Q9Y6C2 1016 aa11.16□□□□□ -0.62
GTF3A-206ENST00000470606 SCAF1Q9H7N4 1312 aaKnown RBP11.16□□□□□ -0.62
GTF3A-206ENST00000470606 NCOA3Q9Y6Q9 1424 aa11.16□□□□□ -0.62
GTF3A-206ENST00000470606 FOXO3O43524 673 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 INSRP06213 1382 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 DCCP43146 1447 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 XPCQ01831 940 aaPredicted RBP11.15□□□□□ -0.62
GTF3A-206ENST00000470606 RRS1Q15050 365 aaKnown RBP11.15□□□□□ -0.62
GTF3A-206ENST00000470606 AATKQ6ZMQ8 1374 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 SMG6Q86US8 1419 aaKnown RBP11.15□□□□□ -0.62
GTF3A-206ENST00000470606 COG3Q96JB2 828 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 PEAK1Q9H792 1746 aa11.15□□□□□ -0.62
GTF3A-206ENST00000470606 USP31Q70CQ4 1352 aa11.14□□□□□ -0.63
GTF3A-206ENST00000470606 TTC21AQ8NDW8 1320 aa11.14□□□□□ -0.63
GTF3A-206ENST00000470606 WDR43Q15061 677 aaKnown RBP eCLIP11.14□□□□□ -0.63
GTF3A-206ENST00000470606 NUTM2GQ5VZR2 741 aa11.14□□□□□ -0.63
GTF3A-206ENST00000470606 CCDC146Q8IYE0 955 aa11.14□□□□□ -0.63
GTF3A-206ENST00000470606 TRPM3Q9HCF6 1732 aaPredicted RBP11.14□□□□□ -0.63
GTF3A-206ENST00000470606 USP54Q70EL1 1684 aa11.14□□□□□ -0.63
GTF3A-206ENST00000470606 DDX17Q92841 729 aaKnown RBP11.13□□□□□ -0.63
GTF3A-206ENST00000470606 SALL2Q9Y467 1007 aaPredicted RBP11.13□□□□□ -0.63
GTF3A-206ENST00000470606 PPM1GO15355 546 aaPredicted RBP11.12□□□□□ -0.63
GTF3A-206ENST00000470606 ATF3P18847 181 aa11.12□□□□□ -0.63
GTF3A-206ENST00000470606 SOX12O15370 315 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 MSH6P52701 1360 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 PAK3O75914 559 aaPredicted RBP11.11□□□□□ -0.63
GTF3A-206ENST00000470606 NLRP6P59044 892 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 PSME1Q06323 249 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 ABTB2Q8N961 1025 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 CDK12Q9NYV4 1490 aaPredicted RBP11.11□□□□□ -0.63
GTF3A-206ENST00000470606 KIF1AQ12756 1690 aa11.11□□□□□ -0.63
GTF3A-206ENST00000470606 CADPS2Q86UW7 1296 aa11.1□□□□□ -0.63
GTF3A-206ENST00000470606 CFAP53Q96M91 514 aa11.1□□□□□ -0.63
GTF3A-206ENST00000470606 MAP3K19Q56UN5 1328 aa11.1□□□□□ -0.63
GTF3A-206ENST00000470606 APAF1O14727 1248 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 CDCA7LQ96GN5 454 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 DMRT2Q9Y5R5 561 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 LTBP4Q8N2S1 1624 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 IQSEC2Q5JU85 1478 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 ZNF521Q96K83 1311 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 U2AF1L5P0DN76 240 aaPredicted RBP11.09□□□□□ -0.63
GTF3A-206ENST00000470606 IL13P35225 146 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 U2AF1Q01081 240 aaKnown RBP eCLIP11.09□□□□□ -0.63
GTF3A-206ENST00000470606 HSP90AB2PQ58FF8 381 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 ALS2Q96Q42 1657 aa11.09□□□□□ -0.63
GTF3A-206ENST00000470606 DIAPH1O60610 1272 aaKnown RBP11.08□□□□□ -0.64
GTF3A-206ENST00000470606 BRINP3Q76B58 766 aa11.08□□□□□ -0.64
GTF3A-206ENST00000470606 KRT28Q7Z3Y7 464 aa11.08□□□□□ -0.64
GTF3A-206ENST00000470606 PLEKHF1Q96S99 279 aa11.08□□□□□ -0.64
GTF3A-206ENST00000470606 GTF3C3Q9Y5Q9 886 aa11.08□□□□□ -0.64
GTF3A-206ENST00000470606 NFAT5O94916 1531 aa11.08□□□□□ -0.64
GTF3A-206ENST00000470606 U2SURPO15042 1029 aaKnown RBP11.07□□□□□ -0.64
GTF3A-206ENST00000470606 SLAIN2Q9P270 581 aa11.07□□□□□ -0.64
GTF3A-206ENST00000470606 PXDNQ92626 1479 aa11.07□□□□□ -0.64
GTF3A-206ENST00000470606 LTN1O94822 1766 aa11.07□□□□□ -0.64
GTF3A-206ENST00000470606 RRP7AQ9Y3A4 280 aaKnown RBP11.06□□□□□ -0.64
GTF3A-206ENST00000470606 RGPD1P0DJD0 1748 aa11.06□□□□□ -0.64
GTF3A-206ENST00000470606 EIF4A2Q14240 407 aaKnown RBP11.05□□□□□ -0.64
GTF3A-206ENST00000470606 TCP11L2Q8N4U5 519 aa11.05□□□□□ -0.64
GTF3A-206ENST00000470606 RUNDC1Q96C34 613 aa11.05□□□□□ -0.64
GTF3A-206ENST00000470606 SPINK5Q9NQ38 1064 aaPredicted RBP11.05□□□□□ -0.64
GTF3A-206ENST00000470606 MED1Q15648 1581 aaPredicted RBP11.05□□□□□ -0.64
GTF3A-206ENST00000470606 RSPH6AQ9H0K4 717 aa11.05□□□□□ -0.64
GTF3A-206ENST00000470606 SLIT3O75094 1523 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 PLEKHG5O94827 1062 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 HMOX1P09601 288 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 PHF23Q9BUL5 403 aaPredicted RBP11.04□□□□□ -0.64
GTF3A-206ENST00000470606 NUDCQ9Y266 331 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 USP19O94966 1318 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 SBNO1A3KN83 1393 aa11.04□□□□□ -0.64
GTF3A-206ENST00000470606 AEBP1Q8IUX7 1158 aa11.03□□□□□ -0.64
GTF3A-206ENST00000470606 PHACTR3Q96KR7 559 aa11.03□□□□□ -0.64
GTF3A-206ENST00000470606 CRYBG1Q9Y4K1 1723 aa11.03□□□□□ -0.64
GTF3A-206ENST00000470606 NEUROD2Q15784 382 aa11.03□□□□□ -0.64
GTF3A-206ENST00000470606 FLT4P35916 1363 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms