RNA–Protein interactions for RNA: ENST00000469744.1

MRPL28-208, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,467 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-208ENST00000469744 CABP2Q9NPB3 220 aa24.97■■□□□ 1.59
MRPL28-208ENST00000469744 PLCH1Q4KWH8 1693 aa24.97■■□□□ 1.59
MRPL28-208ENST00000469744 SLIT2O94813 1529 aa24.97■■□□□ 1.59
MRPL28-208ENST00000469744 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.97■■□□□ 1.59
MRPL28-208ENST00000469744 CCDC61Q9Y6R9 512 aa24.96■■□□□ 1.59
MRPL28-208ENST00000469744 ACEP12821 1306 aa24.95■■□□□ 1.59
MRPL28-208ENST00000469744 CRYBG1Q9Y4K1 1723 aa24.95■■□□□ 1.58
MRPL28-208ENST00000469744 POLR3AO14802 1390 aaPredicted RBP24.94■■□□□ 1.58
MRPL28-208ENST00000469744 PPIP5K1Q6PFW1 1433 aa24.94■■□□□ 1.58
MRPL28-208ENST00000469744 UNC5CLQ8IV45 518 aa24.92■■□□□ 1.58
MRPL28-208ENST00000469744 PLEKHG3A1L390 1219 aa24.91■■□□□ 1.58
MRPL28-208ENST00000469744 NUTM2GQ5VZR2 741 aa24.9■■□□□ 1.58
MRPL28-208ENST00000469744 UPF1Q92900 1129 aaKnown RBP eCLIP24.9■■□□□ 1.583e-25■■■■■ 56.4
MRPL28-208ENST00000469744 NWD2Q9ULI1 1742 aa24.9■■□□□ 1.58
MRPL28-208ENST00000469744 FAM83GA6ND36 823 aa24.89■■□□□ 1.58
MRPL28-208ENST00000469744 GJD4Q96KN9 370 aaPredicted RBP24.89■■□□□ 1.58
MRPL28-208ENST00000469744 GLI3P10071 1580 aa24.89■■□□□ 1.58
MRPL28-208ENST00000469744 RALGAPBQ86X10 1494 aa24.88■■□□□ 1.57
MRPL28-208ENST00000469744 PHRF1Q9P1Y6 1649 aaKnown RBP24.87■■□□□ 1.57
MRPL28-208ENST00000469744 EVC2Q86UK5 1308 aa24.87■■□□□ 1.57
MRPL28-208ENST00000469744 CARD11Q9BXL7 1154 aa24.87■■□□□ 1.57
MRPL28-208ENST00000469744 CABP1Q9NZU7 370 aa24.85■■□□□ 1.57
MRPL28-208ENST00000469744 TIMELESSQ9UNS1 1208 aa24.85■■□□□ 1.57
MRPL28-208ENST00000469744 COL14A1Q05707 1796 aaKnown RBP24.85■■□□□ 1.57
MRPL28-208ENST00000469744 NRAPQ86VF7 1730 aa24.85■■□□□ 1.57
MRPL28-208ENST00000469744 CCDC9Q9Y3X0 531 aaKnown RBP24.83■■□□□ 1.57
MRPL28-208ENST00000469744 DIEXFQ68CQ4 756 aaKnown RBP24.83■■□□□ 1.56
MRPL28-208ENST00000469744 BTG4Q9NY30 223 aa24.82■■□□□ 1.56
MRPL28-208ENST00000469744 EP400Q96L91 3159 aa24.81■■□□□ 1.56
MRPL28-208ENST00000469744 VPS72Q15906 364 aa24.81■■□□□ 1.56
MRPL28-208ENST00000469744 ABTB2Q8N961 1025 aa24.81■■□□□ 1.56
MRPL28-208ENST00000469744 PRDM11Q9NQV5 511 aa24.8■■□□□ 1.56
MRPL28-208ENST00000469744 KIAA0232Q92628 1395 aa24.8■■□□□ 1.56
MRPL28-208ENST00000469744 USP6P35125 1406 aa24.79■■□□□ 1.56
MRPL28-208ENST00000469744 NRKQ7Z2Y5 1582 aa24.79■■□□□ 1.56
MRPL28-208ENST00000469744 BRWD3Q6RI45 1802 aa24.78■■□□□ 1.56
MRPL28-208ENST00000469744 ATAD2Q6PL18 1390 aa24.78■■□□□ 1.56
MRPL28-208ENST00000469744 ZC3H6P61129 1189 aaKnown RBP24.78■■□□□ 1.56
MRPL28-208ENST00000469744 CHRNA2Q15822 529 aa24.78■■□□□ 1.56
MRPL28-208ENST00000469744 AKAP12Q02952 1782 aa24.76■■□□□ 1.55
MRPL28-208ENST00000469744 SBNO2Q9Y2G9 1366 aa24.75■■□□□ 1.55
MRPL28-208ENST00000469744 USP19O94966 1318 aa24.74■■□□□ 1.55
MRPL28-208ENST00000469744 PIK3C2AO00443 1686 aa24.73■■□□□ 1.55
MRPL28-208ENST00000469744 SEPT12Q8IYM1 358 aa24.72■■□□□ 1.55
MRPL28-208ENST00000469744 NLRP13Q86W25 1043 aa24.71■■□□□ 1.55
MRPL28-208ENST00000469744 BRD4O60885 1362 aaPredicted RBP24.71■■□□□ 1.55
MRPL28-208ENST00000469744 SSH2Q76I76 1423 aa24.71■■□□□ 1.55
MRPL28-208ENST00000469744 A0A0G2JS52 829 aa24.7■■□□□ 1.54
MRPL28-208ENST00000469744 MYT1Q01538 1121 aa24.7■■□□□ 1.54
MRPL28-208ENST00000469744 FAM98CQ17RN3 349 aaKnown RBP24.7■■□□□ 1.54
MRPL28-208ENST00000469744 NLRP6P59044 892 aa24.69■■□□□ 1.54
MRPL28-208ENST00000469744 STRN4Q9NRL3 753 aa24.69■■□□□ 1.54
MRPL28-208ENST00000469744 GCP02774 474 aa24.68■■□□□ 1.54
MRPL28-208ENST00000469744 CPSF1Q10570 1443 aaKnown RBP24.67■■□□□ 1.54
MRPL28-208ENST00000469744 SPATA31A5Q5VU36 1347 aa24.67■■□□□ 1.54
MRPL28-208ENST00000469744 SPATA31A7Q8IWB4 1347 aa24.67■■□□□ 1.54
MRPL28-208ENST00000469744 MON2Q7Z3U7 1717 aa24.67■■□□□ 1.54
MRPL28-208ENST00000469744 KTN1Q86UP2 1357 aaKnown RBP24.66■■□□□ 1.54
MRPL28-208ENST00000469744 TTC21BQ7Z4L5 1316 aa24.66■■□□□ 1.54
MRPL28-208ENST00000469744 ST20-MTHFSA0A0A6YYL1 179 aa24.66■■□□□ 1.54
MRPL28-208ENST00000469744 ONECUT3O60422 494 aaPredicted RBP24.66■■□□□ 1.54
MRPL28-208ENST00000469744 LMO7Q8WWI1 1683 aa24.66■■□□□ 1.54
MRPL28-208ENST00000469744 CAMTA1Q9Y6Y1 1673 aa24.66■■□□□ 1.54
MRPL28-208ENST00000469744 CPDO75976 1380 aa24.66■■□□□ 1.54
MRPL28-208ENST00000469744 ZBTB7CA1YPR0 619 aa24.65■■□□□ 1.54
MRPL28-208ENST00000469744 ZNF692Q9BU19 519 aaPredicted RBP24.65■■□□□ 1.54
MRPL28-208ENST00000469744 SLIT3O75094 1523 aa24.65■■□□□ 1.54
MRPL28-208ENST00000469744 TMC1Q8TDI8 760 aa24.64■■□□□ 1.54
MRPL28-208ENST00000469744 CD163L1Q9NR16 1453 aa24.63■■□□□ 1.53
MRPL28-208ENST00000469744 TESK2Q96S53 571 aa24.63■■□□□ 1.53
MRPL28-208ENST00000469744 SLC12A5Q9H2X9 1139 aa24.62■■□□□ 1.53
MRPL28-208ENST00000469744 SPATA31A1Q5TZJ5 1347 aa24.61■■□□□ 1.53
MRPL28-208ENST00000469744 EVA1CP58658 441 aa24.61■■□□□ 1.53
MRPL28-208ENST00000469744 KRT27Q7Z3Y8 459 aa24.61■■□□□ 1.53
MRPL28-208ENST00000469744 USP35Q9P2H5 1018 aa24.61■■□□□ 1.53
MRPL28-208ENST00000469744 THSD7AQ9UPZ6 1657 aa24.61■■□□□ 1.53
MRPL28-208ENST00000469744 SOX12O15370 315 aa24.6■■□□□ 1.53
MRPL28-208ENST00000469744 TTC21AQ8NDW8 1320 aa24.6■■□□□ 1.53
MRPL28-208ENST00000469744 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.59■■□□□ 1.53
MRPL28-208ENST00000469744 USP47Q96K76 1375 aa24.59■■□□□ 1.53
MRPL28-208ENST00000469744 LARP1Q6PKG0 1096 aaKnown RBP24.58■■□□□ 1.53
MRPL28-208ENST00000469744 ZRANB1Q9UGI0 708 aa24.58■■□□□ 1.52
MRPL28-208ENST00000469744 COL5A2P05997 1499 aaPredicted RBP24.57■■□□□ 1.52
MRPL28-208ENST00000469744 FAM182BQ5T319 152 aa24.56■■□□□ 1.52
MRPL28-208ENST00000469744 A0A1W2PP64 1363 aa24.55■■□□□ 1.52
MRPL28-208ENST00000469744 COL18A1P39060 1754 aa24.55■■□□□ 1.52
MRPL28-208ENST00000469744 HDGFL2Q7Z4V5 671 aaPredicted RBP24.55■■□□□ 1.52
MRPL28-208ENST00000469744 BLMP54132 1417 aaPredicted RBP24.54■■□□□ 1.52
MRPL28-208ENST00000469744 NME9Q86XW9 330 aa24.54■■□□□ 1.52
MRPL28-208ENST00000469744 AATKQ6ZMQ8 1374 aa24.54■■□□□ 1.52
MRPL28-208ENST00000469744 RGPD5Q99666 1765 aa24.53■■□□□ 1.52
MRPL28-208ENST00000469744 CCDC125Q86Z20 511 aa24.53■■□□□ 1.52
MRPL28-208ENST00000469744 NFAT5O94916 1531 aa24.53■■□□□ 1.52
MRPL28-208ENST00000469744 PUS7Q96PZ0 661 aaKnown RBP24.52■■□□□ 1.52
MRPL28-208ENST00000469744 TERF2IPQ9NYB0 399 aa24.51■■□□□ 1.51
MRPL28-208ENST00000469744 USP54Q70EL1 1684 aa24.51■■□□□ 1.51
MRPL28-208ENST00000469744 EDC4Q6P2E9 1401 aaKnown RBP24.51■■□□□ 1.51
MRPL28-208ENST00000469744 KCNH5Q8NCM2 988 aa24.51■■□□□ 1.51
MRPL28-208ENST00000469744 AXIN2Q9Y2T1 843 aa24.51■■□□□ 1.51
MRPL28-208ENST00000469744 ARHGEF25Q86VW2 580 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 173 ms