RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 CADPS2Q86UW7 1296 aa14.63□□□□□ -0.07
MSX1-202ENST00000468421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.63□□□□□ -0.07
MSX1-202ENST00000468421 NGDNQ8NEJ9 315 aaKnown RBP14.63□□□□□ -0.07
MSX1-202ENST00000468421 ORAI2Q96SN7 254 aa14.63□□□□□ -0.07
MSX1-202ENST00000468421 ZNF692Q9BU19 519 aaPredicted RBP14.63□□□□□ -0.07
MSX1-202ENST00000468421 MYBBP1AQ9BQG0 1328 aaKnown RBP14.63□□□□□ -0.07
MSX1-202ENST00000468421 FYB1O15117 783 aa14.62□□□□□ -0.07
MSX1-202ENST00000468421 TTC21BQ7Z4L5 1316 aa14.62□□□□□ -0.07
MSX1-202ENST00000468421 GGNBP2Q9H3C7 697 aa14.61□□□□□ -0.07
MSX1-202ENST00000468421 NME9Q86XW9 330 aa14.6□□□□□ -0.07
MSX1-202ENST00000468421 PPP2R1AP30153 589 aa14.59□□□□□ -0.07
MSX1-202ENST00000468421 ZRANB1Q9UGI0 708 aa14.59□□□□□ -0.07
MSX1-202ENST00000468421 MAP2P11137 1827 aaKnown RBP14.59□□□□□ -0.07
MSX1-202ENST00000468421 NHSL1Q5SYE7 1610 aa14.59□□□□□ -0.07
MSX1-202ENST00000468421 ALS2Q96Q42 1657 aa14.58□□□□□ -0.07
MSX1-202ENST00000468421 OVOS2A0A0J9YW53 1432 aa14.58□□□□□ -0.07
MSX1-202ENST00000468421 OVOS2Q6IE36 1432 aa14.58□□□□□ -0.07
MSX1-202ENST00000468421 MORC1Q86VD1 984 aa14.58□□□□□ -0.08
MSX1-202ENST00000468421 BRD4O60885 1362 aaPredicted RBP14.58□□□□□ -0.08
MSX1-202ENST00000468421 NLRP13Q86W25 1043 aa14.57□□□□□ -0.08
MSX1-202ENST00000468421 MRS2Q9HD23 443 aa14.57□□□□□ -0.08
MSX1-202ENST00000468421 TTC21AQ8NDW8 1320 aa14.57□□□□□ -0.08
MSX1-202ENST00000468421 FOXO3O43524 673 aa14.56□□□□□ -0.08
MSX1-202ENST00000468421 PXDNQ92626 1479 aa14.56□□□□□ -0.08
MSX1-202ENST00000468421 SHPRHQ149N8 1683 aa14.55□□□□□ -0.08
MSX1-202ENST00000468421 ROBO1Q9Y6N7 1651 aa14.55□□□□□ -0.08
MSX1-202ENST00000468421 TNNT2P45379 298 aaPredicted RBP14.55□□□□□ -0.08
MSX1-202ENST00000468421 XPCQ01831 940 aaPredicted RBP14.55□□□□□ -0.08
MSX1-202ENST00000468421 BRINP3Q76B58 766 aa14.55□□□□□ -0.08
MSX1-202ENST00000468421 DDX17Q92841 729 aaKnown RBP14.54□□□□□ -0.08
MSX1-202ENST00000468421 SLAIN2Q9P270 581 aa14.54□□□□□ -0.08
MSX1-202ENST00000468421 USP31Q70CQ4 1352 aa14.54□□□□□ -0.08
MSX1-202ENST00000468421 CRYBG1Q9Y4K1 1723 aa14.53□□□□□ -0.08
MSX1-202ENST00000468421 PSME1Q06323 249 aa14.53□□□□□ -0.08
MSX1-202ENST00000468421 COG3Q96JB2 828 aa14.53□□□□□ -0.08
MSX1-202ENST00000468421 SCAF1Q9H7N4 1312 aaKnown RBP14.52□□□□□ -0.08
MSX1-202ENST00000468421 PAK3O75914 559 aaPredicted RBP14.52□□□□□ -0.09
MSX1-202ENST00000468421 KRT28Q7Z3Y7 464 aa14.52□□□□□ -0.09
MSX1-202ENST00000468421 PEAK1Q9H792 1746 aa14.52□□□□□ -0.09
MSX1-202ENST00000468421 NPHP3Q7Z494 1330 aa14.51□□□□□ -0.09
MSX1-202ENST00000468421 FBLN1P23142 703 aa14.51□□□□□ -0.09
MSX1-202ENST00000468421 LTN1O94822 1766 aa14.51□□□□□ -0.09
MSX1-202ENST00000468421 COL3A1P02461 1466 aaPredicted RBP14.5□□□□□ -0.09
MSX1-202ENST00000468421 SMG6Q86US8 1419 aaKnown RBP14.5□□□□□ -0.09
MSX1-202ENST00000468421 NUTM2GQ5VZR2 741 aa14.5□□□□□ -0.09
MSX1-202ENST00000468421 CERKQ8TCT0 537 aa14.5□□□□□ -0.09
MSX1-202ENST00000468421 PHRF1Q9P1Y6 1649 aaKnown RBP14.5□□□□□ -0.09
MSX1-202ENST00000468421 SLIT3O75094 1523 aa14.5□□□□□ -0.09
MSX1-202ENST00000468421 IQSEC2Q5JU85 1478 aa14.5□□□□□ -0.09
MSX1-202ENST00000468421 SBNO1A3KN83 1393 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 AATKQ6ZMQ8 1374 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 MTHFSP49914 203 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 ABTB2Q8N961 1025 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 NFAT5O94916 1531 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 TNS3Q68CZ2 1445 aa14.49□□□□□ -0.09
MSX1-202ENST00000468421 AHDC1Q5TGY3 1603 aaPredicted RBP14.48□□□□□ -0.09
MSX1-202ENST00000468421 MED1Q15648 1581 aaPredicted RBP14.48□□□□□ -0.09
MSX1-202ENST00000468421 NLRP6P59044 892 aa14.48□□□□□ -0.09
MSX1-202ENST00000468421 PNISRQ8TF01 805 aaKnown RBP14.48□□□□□ -0.09
MSX1-202ENST00000468421 ABCA3Q99758 1704 aa14.48□□□□□ -0.09
MSX1-202ENST00000468421 CDK12Q9NYV4 1490 aaPredicted RBP14.47□□□□□ -0.09
MSX1-202ENST00000468421 FAM9BQ8IZU0 186 aa14.47□□□□□ -0.09
MSX1-202ENST00000468421 YTHDC1Q96MU7 727 aaKnown RBP14.47□□□□□ -0.09
MSX1-202ENST00000468421 SOS2Q07890 1332 aaPredicted RBP14.46□□□□□ -0.09
MSX1-202ENST00000468421 RRS1Q15050 365 aaKnown RBP14.46□□□□□ -0.09
MSX1-202ENST00000468421 POLKQ9UBT6 870 aa14.46□□□□□ -0.09
MSX1-202ENST00000468421 EMILIN1Q9Y6C2 1016 aa14.46□□□□□ -0.09
MSX1-202ENST00000468421 PHLPP1O60346 1717 aa14.46□□□□□ -0.1
MSX1-202ENST00000468421 SOX12O15370 315 aa14.45□□□□□ -0.1
MSX1-202ENST00000468421 USP19O94966 1318 aa14.44□□□□□ -0.1
MSX1-202ENST00000468421 SPATA31A3Q5VYP0 1347 aa14.44□□□□□ -0.1
MSX1-202ENST00000468421 LMOD2Q6P5Q4 547 aa14.44□□□□□ -0.1
MSX1-202ENST00000468421 PNPLA6Q8IY17 1366 aa14.44□□□□□ -0.1
MSX1-202ENST00000468421 COL16A1Q07092 1604 aaPredicted RBP14.44□□□□□ -0.1
MSX1-202ENST00000468421 INSRP06213 1382 aa14.43□□□□□ -0.1
MSX1-202ENST00000468421 CFAP53Q96M91 514 aa14.42□□□□□ -0.1
MSX1-202ENST00000468421 RGPD5Q99666 1765 aa14.42□□□□□ -0.1
MSX1-202ENST00000468421 MAP3K19Q56UN5 1328 aa14.41□□□□□ -0.1
MSX1-202ENST00000468421 PPM1GO15355 546 aaPredicted RBP14.41□□□□□ -0.1
MSX1-202ENST00000468421 ARHGEF10O15013 1369 aa14.41□□□□□ -0.1
MSX1-202ENST00000468421 RGPD1P0DJD0 1748 aa14.41□□□□□ -0.1
MSX1-202ENST00000468421 BLMP54132 1417 aaPredicted RBP14.41□□□□□ -0.1
MSX1-202ENST00000468421 TOM1O60784 492 aa14.4□□□□□ -0.1
MSX1-202ENST00000468421 PLEKHG5O94827 1062 aa14.4□□□□□ -0.1
MSX1-202ENST00000468421 COL22A1Q8NFW1 1626 aaPredicted RBP14.4□□□□□ -0.1
MSX1-202ENST00000468421 UBAP1LF5GYI3 381 aa14.39□□□□□ -0.11
MSX1-202ENST00000468421 SOCS7O14512 581 aa14.39□□□□□ -0.11
MSX1-202ENST00000468421 WDR43Q15061 677 aaKnown RBP eCLIP14.39□□□□□ -0.11
MSX1-202ENST00000468421 ADAMTS8Q9UP79 889 aa14.39□□□□□ -0.11
MSX1-202ENST00000468421 COL18A1P39060 1754 aa14.39□□□□□ -0.11
MSX1-202ENST00000468421 FLT4P35916 1363 aa14.38□□□□□ -0.11
MSX1-202ENST00000468421 RGPD2P0DJD1 1756 aa14.38□□□□□ -0.11
MSX1-202ENST00000468421 GCP02774 474 aa14.38□□□□□ -0.11
MSX1-202ENST00000468421 PIP4K2BP78356 416 aa14.38□□□□□ -0.11
MSX1-202ENST00000468421 RTL1A6NKG5 1358 aa14.37□□□□□ -0.11
MSX1-202ENST00000468421 DIAPH1O60610 1272 aaKnown RBP14.37□□□□□ -0.11
MSX1-202ENST00000468421 KCNH5Q8NCM2 988 aa14.37□□□□□ -0.11
MSX1-202ENST00000468421 CABLES1Q8TDN4 633 aa14.37□□□□□ -0.11
MSX1-202ENST00000468421 KIF24Q5T7B8 1368 aa14.36□□□□□ -0.11
MSX1-202ENST00000468421 HOXC9P31274 260 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms