RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 NWD2Q9ULI1 1742 aa17.3■□□□□ 0.36
PTPRF-211ENST00000467464 TRPM1Q7Z4N2 1603 aa17.29■□□□□ 0.36
PTPRF-211ENST00000467464 HAP1P54257 671 aaPredicted RBP17.29■□□□□ 0.36
PTPRF-211ENST00000467464 CCDC61Q9Y6R9 512 aa17.29■□□□□ 0.36
PTPRF-211ENST00000467464 ACEP12821 1306 aa17.28■□□□□ 0.36
PTPRF-211ENST00000467464 NRAPQ86VF7 1730 aa17.28■□□□□ 0.36
PTPRF-211ENST00000467464 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
PTPRF-211ENST00000467464 NBPF8Q3BBV2 869 aa17.26■□□□□ 0.35
PTPRF-211ENST00000467464 ONECUT3O60422 494 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-211ENST00000467464 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-211ENST00000467464 QRICH2Q9H0J4 1663 aa17.25■□□□□ 0.35
PTPRF-211ENST00000467464 PPIP5K1Q6PFW1 1433 aa17.24■□□□□ 0.35
PTPRF-211ENST00000467464 CABP2Q9NPB3 220 aa17.24■□□□□ 0.35
PTPRF-211ENST00000467464 COL14A1Q05707 1796 aaKnown RBP17.24■□□□□ 0.35
PTPRF-211ENST00000467464 PHRF1Q9P1Y6 1649 aaKnown RBP17.24■□□□□ 0.35
PTPRF-211ENST00000467464 BTG4Q9NY30 223 aa17.23■□□□□ 0.35
PTPRF-211ENST00000467464 SRPK2P78362 688 aaKnown RBP17.22■□□□□ 0.35
PTPRF-211ENST00000467464 SEPT12Q8IYM1 358 aa17.22■□□□□ 0.35
PTPRF-211ENST00000467464 ROCK2O75116 1388 aaKnown RBP17.22■□□□□ 0.35
PTPRF-211ENST00000467464 KIAA0232Q92628 1395 aa17.22■□□□□ 0.35
PTPRF-211ENST00000467464 USP19O94966 1318 aa17.21■□□□□ 0.35
PTPRF-211ENST00000467464 NRKQ7Z2Y5 1582 aa17.21■□□□□ 0.35
PTPRF-211ENST00000467464 NUTM2GQ5VZR2 741 aa17.2■□□□□ 0.34
PTPRF-211ENST00000467464 SSH2Q76I76 1423 aa17.2■□□□□ 0.34
PTPRF-211ENST00000467464 PRDM11Q9NQV5 511 aa17.19■□□□□ 0.34
PTPRF-211ENST00000467464 USP6P35125 1406 aa17.19■□□□□ 0.34
PTPRF-211ENST00000467464 SPATA31A5Q5VU36 1347 aa17.19■□□□□ 0.34
PTPRF-211ENST00000467464 SPATA31A7Q8IWB4 1347 aa17.19■□□□□ 0.34
PTPRF-211ENST00000467464 CCDC9Q9Y3X0 531 aaKnown RBP17.18■□□□□ 0.34
PTPRF-211ENST00000467464 BRD4O60885 1362 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-211ENST00000467464 CHRNA2Q15822 529 aa17.17■□□□□ 0.34
PTPRF-211ENST00000467464 CABP1Q9NZU7 370 aa17.17■□□□□ 0.34
PTPRF-211ENST00000467464 BRWD3Q6RI45 1802 aa17.17■□□□□ 0.34
PTPRF-211ENST00000467464 CPDO75976 1380 aa17.16■□□□□ 0.34
PTPRF-211ENST00000467464 BLMP54132 1417 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-211ENST00000467464 ZC3H6P61129 1189 aaKnown RBP17.16■□□□□ 0.34
PTPRF-211ENST00000467464 FAM98CQ17RN3 349 aaKnown RBP17.16■□□□□ 0.34
PTPRF-211ENST00000467464 CCDC125Q86Z20 511 aa17.16■□□□□ 0.34
PTPRF-211ENST00000467464 THSD7AQ9UPZ6 1657 aa17.16■□□□□ 0.34
PTPRF-211ENST00000467464 EVC2Q86UK5 1308 aa17.16■□□□□ 0.34
PTPRF-211ENST00000467464 SBNO2Q9Y2G9 1366 aa17.15■□□□□ 0.34
PTPRF-211ENST00000467464 ABTB2Q8N961 1025 aa17.15■□□□□ 0.34
PTPRF-211ENST00000467464 LMO7Q8WWI1 1683 aa17.15■□□□□ 0.34
PTPRF-211ENST00000467464 KRT27Q7Z3Y8 459 aa17.14■□□□□ 0.33
PTPRF-211ENST00000467464 CAMTA1Q9Y6Y1 1673 aa17.13■□□□□ 0.33
PTPRF-211ENST00000467464 SLIT3O75094 1523 aa17.13■□□□□ 0.33
PTPRF-211ENST00000467464 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
PTPRF-211ENST00000467464 SPATA31A1Q5TZJ5 1347 aa17.13■□□□□ 0.33
PTPRF-211ENST00000467464 CPSF1Q10570 1443 aaKnown RBP17.13■□□□□ 0.33
PTPRF-211ENST00000467464 GCP02774 474 aa17.12■□□□□ 0.33
PTPRF-211ENST00000467464 PIK3C2AO00443 1686 aa17.11■□□□□ 0.33
PTPRF-211ENST00000467464 NLRP13Q86W25 1043 aa17.11■□□□□ 0.33
PTPRF-211ENST00000467464 TONSLQ96HA7 1378 aa17.11■□□□□ 0.33
PTPRF-211ENST00000467464 CARD11Q9BXL7 1154 aa17.1■□□□□ 0.33
PTPRF-211ENST00000467464 SRCAPQ6ZRS2 3230 aa17.09■□□□□ 0.33
PTPRF-211ENST00000467464 COL5A2P05997 1499 aaPredicted RBP17.08■□□□□ 0.32
PTPRF-211ENST00000467464 CD163L1Q9NR16 1453 aa17.08■□□□□ 0.32
PTPRF-211ENST00000467464 TTC21BQ7Z4L5 1316 aa17.08■□□□□ 0.32
PTPRF-211ENST00000467464 DEFB132Q7Z7B7 95 aa17.08■□□□□ 0.32
PTPRF-211ENST00000467464 STRN4Q9NRL3 753 aa17.08■□□□□ 0.32
PTPRF-211ENST00000467464 A0A0G2JS52 829 aa17.07■□□□□ 0.32
PTPRF-211ENST00000467464 NLRP6P59044 892 aa17.07■□□□□ 0.32
PTPRF-211ENST00000467464 MYT1Q01538 1121 aa17.07■□□□□ 0.32
PTPRF-211ENST00000467464 LARP1Q6PKG0 1096 aaKnown RBP17.07■□□□□ 0.32
PTPRF-211ENST00000467464 AATKQ6ZMQ8 1374 aa17.06■□□□□ 0.32
PTPRF-211ENST00000467464 FAM182BQ5T319 152 aa17.06■□□□□ 0.32
PTPRF-211ENST00000467464 AKAP12Q02952 1782 aa17.05■□□□□ 0.32
PTPRF-211ENST00000467464 BARGINQ6ZT62 677 aa17.05■□□□□ 0.32
PTPRF-211ENST00000467464 ZNF692Q9BU19 519 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-211ENST00000467464 TTC21AQ8NDW8 1320 aa17.03■□□□□ 0.32
PTPRF-211ENST00000467464 NFAT5O94916 1531 aa17.03■□□□□ 0.32
PTPRF-211ENST00000467464 TESK2Q96S53 571 aa17.03■□□□□ 0.32
PTPRF-211ENST00000467464 KTN1Q86UP2 1357 aaKnown RBP17.02■□□□□ 0.32
PTPRF-211ENST00000467464 COL18A1P39060 1754 aa17.02■□□□□ 0.32
PTPRF-211ENST00000467464 ZRANB1Q9UGI0 708 aa17.02■□□□□ 0.32
PTPRF-211ENST00000467464 DISP2A7MBM2 1401 aa17.02■□□□□ 0.31
PTPRF-211ENST00000467464 MON2Q7Z3U7 1717 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 EVA1CP58658 441 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 ARHGEF25Q86VW2 580 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 TCP11L2Q8N4U5 519 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 USP35Q9P2H5 1018 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 AXIN2Q9Y2T1 843 aa17.01■□□□□ 0.31
PTPRF-211ENST00000467464 CRB1P82279 1406 aa17■□□□□ 0.31
PTPRF-211ENST00000467464 SF3B2Q13435 895 aaKnown RBP17■□□□□ 0.31
PTPRF-211ENST00000467464 USP31Q70CQ4 1352 aa17■□□□□ 0.31
PTPRF-211ENST00000467464 TNS1Q9HBL0 1735 aaKnown RBP16.99■□□□□ 0.31
PTPRF-211ENST00000467464 PUS7Q96PZ0 661 aaKnown RBP16.99■□□□□ 0.31
PTPRF-211ENST00000467464 THRAP3Q9Y2W1 955 aaKnown RBP16.99■□□□□ 0.31
PTPRF-211ENST00000467464 USP54Q70EL1 1684 aa16.99■□□□□ 0.31
PTPRF-211ENST00000467464 SLC12A5Q9H2X9 1139 aa16.98■□□□□ 0.31
PTPRF-211ENST00000467464 RGPD1P0DJD0 1748 aa16.97■□□□□ 0.31
PTPRF-211ENST00000467464 ST20-MTHFSA0A0A6YYL1 179 aa16.97■□□□□ 0.31
PTPRF-211ENST00000467464 BAG6P46379 1132 aa16.97■□□□□ 0.31
PTPRF-211ENST00000467464 A0A1W2PP64 1363 aa16.97■□□□□ 0.31
PTPRF-211ENST00000467464 WDR17Q8IZU2 1322 aa16.96■□□□□ 0.31
PTPRF-211ENST00000467464 EDC4Q6P2E9 1401 aaKnown RBP16.96■□□□□ 0.31
PTPRF-211ENST00000467464 ABCC6O95255 1503 aa16.96■□□□□ 0.31
PTPRF-211ENST00000467464 PARP4Q9UKK3 1724 aaKnown RBP16.96■□□□□ 0.31
PTPRF-211ENST00000467464 ZBTB7CA1YPR0 619 aa16.96■□□□□ 0.31
PTPRF-211ENST00000467464 FAM196AQ6ZSG2 479 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms