RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 KIAA1107Q9UPP5 1409 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 PBRM1Q86U86 1689 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 FOSBP53539 338 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 ZFYVE27Q5T4F4 411 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 RALYLQ86SE5 291 aaKnown RBP10.53□□□□□ -0.72
HPS4-209ENST00000466781 GGNBP2Q9H3C7 697 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 ASXL2Q76L83 1435 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 WDR62O43379 1518 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 CDR1P51861 262 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 WASHC4Q2M389 1173 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 DDX19BQ9UMR2 479 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 RTEL1-TNFRSF6BF6WH68 1400 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 HSP90AB2PQ58FF8 381 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 ADAMTS12P58397 1594 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 XBP1P17861 261 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 NEUROD6Q96NK8 337 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 RUFY1Q96T51 708 aa10.53□□□□□ -0.72
HPS4-209ENST00000466781 RIPK4P57078 832 aa10.52□□□□□ -0.72
HPS4-209ENST00000466781 FAM161AQ3B820 660 aa10.52□□□□□ -0.72
HPS4-209ENST00000466781 HOMER1Q86YM7 354 aa10.52□□□□□ -0.73
HPS4-209ENST00000466781 KIF6Q6ZMV9 814 aa10.52□□□□□ -0.73
HPS4-209ENST00000466781 MTMR7Q9Y216 660 aa10.52□□□□□ -0.73
HPS4-209ENST00000466781 PAF1Q8N7H5 531 aa10.52□□□□□ -0.73
HPS4-209ENST00000466781 RDXP35241 583 aaKnown RBP10.51□□□□□ -0.73
HPS4-209ENST00000466781 AK7Q96M32 723 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 AIMP1Q12904 312 aaKnown RBP10.51□□□□□ -0.73
HPS4-209ENST00000466781 SASS6Q6UVJ0 657 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 NINLQ9Y2I6 1382 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 PPP6R1Q9UPN7 881 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 SMC3Q9UQE7 1217 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 TOM1L2Q6ZVM7 507 aa10.51□□□□□ -0.73
HPS4-209ENST00000466781 PPP1R1BQ9UD71 204 aaPredicted RBP10.51□□□□□ -0.73
HPS4-209ENST00000466781 FAM135AQ9P2D6 1515 aa10.5□□□□□ -0.73
HPS4-209ENST00000466781 VPS37CA5D8V6 355 aaPredicted RBP10.5□□□□□ -0.73
HPS4-209ENST00000466781 TATP17735 454 aaPredicted RBP10.5□□□□□ -0.73
HPS4-209ENST00000466781 APAF1O14727 1248 aa10.5□□□□□ -0.73
HPS4-209ENST00000466781 PLEKHO1Q53GL0 409 aaPredicted RBP10.5□□□□□ -0.73
HPS4-209ENST00000466781 ZNF692Q9BU19 519 aaPredicted RBP10.5□□□□□ -0.73
HPS4-209ENST00000466781 INTS3Q68E01 1043 aaKnown RBP10.5□□□□□ -0.73
HPS4-209ENST00000466781 OLFM4Q6UX06 510 aa10.5□□□□□ -0.73
HPS4-209ENST00000466781 SLC3A2P08195 630 aaKnown RBP10.49□□□□□ -0.73
HPS4-209ENST00000466781 CCDC73Q6ZRK6 1079 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 COG6Q9Y2V7 657 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 CCDC173Q0VFZ6 552 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 TBC1D2BQ9UPU7 963 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 WDR7Q9Y4E6 1490 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 OFD1O75665 1012 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 CEBPAP49715 358 aaPredicted RBP10.49□□□□□ -0.73
HPS4-209ENST00000466781 TEX35Q5T0J7 233 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 CRBNQ96SW2 442 aa10.49□□□□□ -0.73
HPS4-209ENST00000466781 SART3Q15020 963 aaKnown RBP10.48□□□□□ -0.73
HPS4-209ENST00000466781 ITSN2Q9NZM3 1697 aa10.48□□□□□ -0.73
HPS4-209ENST00000466781 SLC4A3P48751 1232 aa10.48□□□□□ -0.73
HPS4-209ENST00000466781 DZIP1LQ8IYY4 767 aaKnown RBP10.48□□□□□ -0.73
HPS4-209ENST00000466781 GNAI1P63096 354 aa10.48□□□□□ -0.73
HPS4-209ENST00000466781 CDK5RAP3Q96JB5 506 aa10.48□□□□□ -0.73
HPS4-209ENST00000466781 ANKRD30BQ9BXX2 1392 aa10.48□□□□□ -0.73
HPS4-209ENST00000466781 RBM42Q9BTD8 480 aaKnown RBP10.48□□□□□ -0.73
HPS4-209ENST00000466781 FAM177BA6PVY3 158 aa10.47□□□□□ -0.73
HPS4-209ENST00000466781 ACBD3Q9H3P7 528 aa10.47□□□□□ -0.73
HPS4-209ENST00000466781 PRKRIP1Q9H875 184 aaPredicted RBP10.47□□□□□ -0.73
HPS4-209ENST00000466781 RRP1P56182 461 aaKnown RBP10.47□□□□□ -0.73
HPS4-209ENST00000466781 ZNF428Q96B54 188 aa10.47□□□□□ -0.73
HPS4-209ENST00000466781 MYO6Q9UM54 1294 aa10.47□□□□□ -0.73
HPS4-209ENST00000466781 RUNDC1Q96C34 613 aa10.46□□□□□ -0.73
HPS4-209ENST00000466781 KIF7Q2M1P5 1343 aa10.46□□□□□ -0.73
HPS4-209ENST00000466781 UBTFL1P0CB47 393 aaPredicted RBP10.46□□□□□ -0.73
HPS4-209ENST00000466781 ZNF771Q7L3S4 317 aaPredicted RBP10.46□□□□□ -0.73
HPS4-209ENST00000466781 SPG7Q9UQ90 795 aa10.46□□□□□ -0.73
HPS4-209ENST00000466781 XPCQ01831 940 aaPredicted RBP10.46□□□□□ -0.74
HPS4-209ENST00000466781 KDM4AO75164 1064 aa10.46□□□□□ -0.74
HPS4-209ENST00000466781 PSMA5P28066 241 aa10.46□□□□□ -0.74
HPS4-209ENST00000466781 SYCP1Q15431 976 aa10.46□□□□□ -0.74
HPS4-209ENST00000466781 CNTROBQ8N137 903 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 CAGE1Q8TC20 777 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 GAS2L2Q8NHY3 880 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 NAT10Q9H0A0 1025 aaKnown RBP10.45□□□□□ -0.74
HPS4-209ENST00000466781 KIAA0556O60303 1618 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 PRDM11Q9NQV5 511 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 NBPF1Q3BBV0 1214 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 CABP1Q9NZU7 370 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 TNRQ92752 1358 aa10.45□□□□□ -0.74
HPS4-209ENST00000466781 KRT18P05783 430 aaKnown RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 LRPPRCP42704 1394 aaKnown RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 TTC39AQ5SRH9 613 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 PDILTQ8N807 584 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 EXOC6Q8TAG9 804 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 FSD1Q9BTV5 496 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 GNL3LQ9NVN8 582 aaKnown RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 CABP4P57796 275 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 MNS1Q8NEH6 495 aa10.44□□□□□ -0.74
HPS4-209ENST00000466781 THOC2Q8NI27 1593 aaKnown RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 DDX54Q8TDD1 881 aaKnown RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 MAGEC2Q9UBF1 373 aaPredicted RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 FBXO31Q5XUX0 539 aaPredicted RBP10.44□□□□□ -0.74
HPS4-209ENST00000466781 TXLNAP40222 546 aa10.43□□□□□ -0.74
HPS4-209ENST00000466781 DNAJC2Q99543 621 aaKnown RBP10.43□□□□□ -0.74
HPS4-209ENST00000466781 ARGLU1Q9NWB6 273 aaPredicted RBP10.43□□□□□ -0.74
HPS4-209ENST00000466781 PDE4AP27815 886 aa10.43□□□□□ -0.74
HPS4-209ENST00000466781 CCDC7Q96M83 1385 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms