RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CCDC61Q9Y6R9 512 aa25.15■■□□□ 1.62
COL7A1-206ENST00000466591 PRDM11Q9NQV5 511 aa25.14■■□□□ 1.62
COL7A1-206ENST00000466591 GLI3P10071 1580 aa25.14■■□□□ 1.61
COL7A1-206ENST00000466591 SF3B2Q13435 895 aaKnown RBP25.13■■□□□ 1.61
COL7A1-206ENST00000466591 CCDC125Q86Z20 511 aa25.13■■□□□ 1.61
COL7A1-206ENST00000466591 SEPT12Q8IYM1 358 aa25.13■■□□□ 1.61
COL7A1-206ENST00000466591 L3MBTL2Q969R5 705 aa25.13■■□□□ 1.61
COL7A1-206ENST00000466591 ALS2Q96Q42 1657 aa25.13■■□□□ 1.61
COL7A1-206ENST00000466591 ACEP12821 1306 aa25.12■■□□□ 1.61
COL7A1-206ENST00000466591 NUTM2GQ5VZR2 741 aa25.11■■□□□ 1.61
COL7A1-206ENST00000466591 SIN3AQ96ST3 1273 aa25.11■■□□□ 1.61
COL7A1-206ENST00000466591 COL14A1Q05707 1796 aaKnown RBP25.1■■□□□ 1.61
COL7A1-206ENST00000466591 NBPF8Q3BBV2 869 aa25.08■■□□□ 1.61
COL7A1-206ENST00000466591 ABTB2Q8N961 1025 aa25.07■■□□□ 1.6
COL7A1-206ENST00000466591 CABP2Q9NPB3 220 aa25.07■■□□□ 1.6
COL7A1-206ENST00000466591 ROCK2O75116 1388 aaKnown RBP25.06■■□□□ 1.6
COL7A1-206ENST00000466591 PPIP5K1Q6PFW1 1433 aa25.06■■□□□ 1.6
COL7A1-206ENST00000466591 FAM98CQ17RN3 349 aaKnown RBP25.06■■□□□ 1.6
COL7A1-206ENST00000466591 KRT27Q7Z3Y8 459 aa25.06■■□□□ 1.6
COL7A1-206ENST00000466591 ZRANB1Q9UGI0 708 aa25.06■■□□□ 1.6
COL7A1-206ENST00000466591 QRICH2Q9H0J4 1663 aa25.05■■□□□ 1.6
COL7A1-206ENST00000466591 ZC3H6P61129 1189 aaKnown RBP25.04■■□□□ 1.6
COL7A1-206ENST00000466591 STRN4Q9NRL3 753 aa25.04■■□□□ 1.6
COL7A1-206ENST00000466591 POLR3AO14802 1390 aaPredicted RBP25.04■■□□□ 1.6
COL7A1-206ENST00000466591 TOPAZ1Q8N9V7 1692 aa25.04■■□□□ 1.6
COL7A1-206ENST00000466591 PLEKHG3A1L390 1219 aa25.03■■□□□ 1.6
COL7A1-206ENST00000466591 EVA1CP58658 441 aa25.03■■□□□ 1.6
COL7A1-206ENST00000466591 KIAA0232Q92628 1395 aa25.03■■□□□ 1.6
COL7A1-206ENST00000466591 BLMP54132 1417 aaPredicted RBP25.03■■□□□ 1.6
COL7A1-206ENST00000466591 CHRNA2Q15822 529 aa25.02■■□□□ 1.6
COL7A1-206ENST00000466591 EVC2Q86UK5 1308 aa25.02■■□□□ 1.6
COL7A1-206ENST00000466591 NRAPQ86VF7 1730 aa25.01■■□□□ 1.59
COL7A1-206ENST00000466591 BRWD3Q6RI45 1802 aa25■■□□□ 1.59
COL7A1-206ENST00000466591 ZBTB7CA1YPR0 619 aa24.99■■□□□ 1.59
COL7A1-206ENST00000466591 NLRP13Q86W25 1043 aa24.99■■□□□ 1.59
COL7A1-206ENST00000466591 PHRF1Q9P1Y6 1649 aaKnown RBP24.98■■□□□ 1.59
COL7A1-206ENST00000466591 TRPM1Q7Z4N2 1603 aa24.97■■□□□ 1.59
COL7A1-206ENST00000466591 SPATA31A5Q5VU36 1347 aa24.97■■□□□ 1.59
COL7A1-206ENST00000466591 SPATA31A7Q8IWB4 1347 aa24.97■■□□□ 1.59
COL7A1-206ENST00000466591 ONECUT3O60422 494 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-206ENST00000466591 CABP1Q9NZU7 370 aa24.97■■□□□ 1.59
COL7A1-206ENST00000466591 CRYBG1Q9Y4K1 1723 aa24.97■■□□□ 1.59
COL7A1-206ENST00000466591 USP35Q9P2H5 1018 aa24.96■■□□□ 1.59
COL7A1-206ENST00000466591 TONSLQ96HA7 1378 aa24.95■■□□□ 1.59
COL7A1-206ENST00000466591 BRD4O60885 1362 aaPredicted RBP24.93■■□□□ 1.58
COL7A1-206ENST00000466591 BAG6P46379 1132 aa24.92■■□□□ 1.58
COL7A1-206ENST00000466591 NLRP6P59044 892 aa24.92■■□□□ 1.58
COL7A1-206ENST00000466591 DEFB132Q7Z7B7 95 aa24.92■■□□□ 1.58
COL7A1-206ENST00000466591 NRKQ7Z2Y5 1582 aa24.9■■□□□ 1.58
COL7A1-206ENST00000466591 CARD11Q9BXL7 1154 aa24.9■■□□□ 1.58
COL7A1-206ENST00000466591 SPATA31A1Q5TZJ5 1347 aa24.89■■□□□ 1.58
COL7A1-206ENST00000466591 USP6P35125 1406 aa24.89■■□□□ 1.58
COL7A1-206ENST00000466591 EP400Q96L91 3159 aa24.88■■□□□ 1.57
COL7A1-206ENST00000466591 GCP02774 474 aa24.88■■□□□ 1.57
COL7A1-206ENST00000466591 USP19O94966 1318 aa24.87■■□□□ 1.57
COL7A1-206ENST00000466591 PDE3BQ13370 1112 aa24.86■■□□□ 1.57
COL7A1-206ENST00000466591 FAM182BQ5T319 152 aa24.86■■□□□ 1.57
COL7A1-206ENST00000466591 SSH2Q76I76 1423 aa24.86■■□□□ 1.57
COL7A1-206ENST00000466591 CPDO75976 1380 aa24.85■■□□□ 1.57
COL7A1-206ENST00000466591 ZNF692Q9BU19 519 aaPredicted RBP24.85■■□□□ 1.57
COL7A1-206ENST00000466591 TRIM26Q12899 539 aaPredicted RBP24.83■■□□□ 1.57
COL7A1-206ENST00000466591 LARP1Q6PKG0 1096 aaKnown RBP24.83■■□□□ 1.57
COL7A1-206ENST00000466591 SOX12O15370 315 aa24.82■■□□□ 1.56
COL7A1-206ENST00000466591 TCP11L2Q8N4U5 519 aa24.82■■□□□ 1.56
COL7A1-206ENST00000466591 TMC1Q8TDI8 760 aa24.81■■□□□ 1.56
COL7A1-206ENST00000466591 THSD7AQ9UPZ6 1657 aa24.81■■□□□ 1.56
COL7A1-206ENST00000466591 FAM196AQ6ZSG2 479 aa24.8■■□□□ 1.56
COL7A1-206ENST00000466591 KTN1Q86UP2 1357 aaKnown RBP24.8■■□□□ 1.56
COL7A1-206ENST00000466591 CAMTA1Q9Y6Y1 1673 aa24.79■■□□□ 1.56
COL7A1-206ENST00000466591 RGPD1P0DJD0 1748 aa24.79■■□□□ 1.56
COL7A1-206ENST00000466591 BARGINQ6ZT62 677 aa24.78■■□□□ 1.56
COL7A1-206ENST00000466591 KCNH5Q8NCM2 988 aa24.78■■□□□ 1.56
COL7A1-206ENST00000466591 TTC21BQ7Z4L5 1316 aa24.78■■□□□ 1.56
COL7A1-206ENST00000466591 EN1Q05925 392 aaPredicted RBP24.77■■□□□ 1.56
COL7A1-206ENST00000466591 TOM1L2Q6ZVM7 507 aa24.77■■□□□ 1.56
COL7A1-206ENST00000466591 THRAP3Q9Y2W1 955 aaKnown RBP24.77■■□□□ 1.56
COL7A1-206ENST00000466591 TTC21AQ8NDW8 1320 aa24.77■■□□□ 1.56
COL7A1-206ENST00000466591 TRIM37O94972 964 aa24.76■■□□□ 1.55
COL7A1-206ENST00000466591 COL5A2P05997 1499 aaPredicted RBP24.76■■□□□ 1.55
COL7A1-206ENST00000466591 CSB-PGBD3P0DP91 1061 aa24.75■■□□□ 1.55
COL7A1-206ENST00000466591 HDGFL2Q7Z4V5 671 aaPredicted RBP24.75■■□□□ 1.55
COL7A1-206ENST00000466591 PIK3C2AO00443 1686 aa24.75■■□□□ 1.55
COL7A1-206ENST00000466591 LMO7Q8WWI1 1683 aa24.75■■□□□ 1.55
COL7A1-206ENST00000466591 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.74■■□□□ 1.55
COL7A1-206ENST00000466591 AATKQ6ZMQ8 1374 aa24.74■■□□□ 1.55
COL7A1-206ENST00000466591 CRB1P82279 1406 aa24.74■■□□□ 1.55
COL7A1-206ENST00000466591 SLIT3O75094 1523 aa24.74■■□□□ 1.55
COL7A1-206ENST00000466591 SBNO2Q9Y2G9 1366 aa24.73■■□□□ 1.55
COL7A1-206ENST00000466591 AKAP12Q02952 1782 aa24.72■■□□□ 1.55
COL7A1-206ENST00000466591 APBA3O96018 575 aa24.71■■□□□ 1.55
COL7A1-206ENST00000466591 PSDA5PKW4 1024 aaPredicted RBP24.7■■□□□ 1.54
COL7A1-206ENST00000466591 TERF2IPQ9NYB0 399 aa24.69■■□□□ 1.54
COL7A1-206ENST00000466591 CPSF1Q10570 1443 aaKnown RBP24.69■■□□□ 1.54
COL7A1-206ENST00000466591 DDB1Q16531 1140 aa24.67■■□□□ 1.54
COL7A1-206ENST00000466591 WDR17Q8IZU2 1322 aa24.66■■□□□ 1.54
COL7A1-206ENST00000466591 C11orf95C9JLR9 678 aaPredicted RBP24.66■■□□□ 1.54
COL7A1-206ENST00000466591 EZH2Q15910 746 aaKnown RBP24.66■■□□□ 1.54
COL7A1-206ENST00000466591 SLC24A1O60721 1099 aa24.65■■□□□ 1.54
COL7A1-206ENST00000466591 ARHGEF25Q86VW2 580 aa24.65■■□□□ 1.54
COL7A1-206ENST00000466591 TNS1Q9HBL0 1735 aaKnown RBP24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms