RNA–Protein interactions for RNA: ENST00000466415.1

VPS16-206, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS16, Length 708 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-206ENST00000466415 GGNBP2Q9H3C7 697 aa16.39■□□□□ 0.21
VPS16-206ENST00000466415 TTC21BQ7Z4L5 1316 aa16.38■□□□□ 0.21
VPS16-206ENST00000466415 TTC21AQ8NDW8 1320 aa16.38■□□□□ 0.21
VPS16-206ENST00000466415 FYB1O15117 783 aa16.37■□□□□ 0.21
VPS16-206ENST00000466415 PPP2R1AP30153 589 aa16.37■□□□□ 0.21
VPS16-206ENST00000466415 TNNT2P45379 298 aaPredicted RBP16.36■□□□□ 0.21
VPS16-206ENST00000466415 NME9Q86XW9 330 aa16.36■□□□□ 0.21
VPS16-206ENST00000466415 COG3Q96JB2 828 aa16.36■□□□□ 0.21
VPS16-206ENST00000466415 ORAI2Q96SN7 254 aa16.36■□□□□ 0.21
VPS16-206ENST00000466415 LTBP4Q8N2S1 1624 aa16.35■□□□□ 0.21
VPS16-206ENST00000466415 PSME1Q06323 249 aa16.35■□□□□ 0.21
VPS16-206ENST00000466415 YTHDC1Q96MU7 727 aaKnown RBP16.35■□□□□ 0.21
VPS16-206ENST00000466415 CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
VPS16-206ENST00000466415 SSH2Q76I76 1423 aa16.34■□□□□ 0.21
VPS16-206ENST00000466415 PAK3O75914 559 aaPredicted RBP16.33■□□□□ 0.2
VPS16-206ENST00000466415 FOXO3O43524 673 aa16.31■□□□□ 0.2
VPS16-206ENST00000466415 OVOS2A0A0J9YW53 1432 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 OVOS2Q6IE36 1432 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 NPHP3Q7Z494 1330 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
VPS16-206ENST00000466415 FAM9BQ8IZU0 186 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 CFAP53Q96M91 514 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 PIK3C2AO00443 1686 aa16.3■□□□□ 0.2
VPS16-206ENST00000466415 SLAIN2Q9P270 581 aa16.29■□□□□ 0.2
VPS16-206ENST00000466415 ZRANB1Q9UGI0 708 aa16.29■□□□□ 0.2
VPS16-206ENST00000466415 USP31Q70CQ4 1352 aa16.28■□□□□ 0.2
VPS16-206ENST00000466415 XPCQ01831 940 aaPredicted RBP16.28■□□□□ 0.2
VPS16-206ENST00000466415 KRT28Q7Z3Y7 464 aa16.28■□□□□ 0.2
VPS16-206ENST00000466415 ABTB2Q8N961 1025 aa16.28■□□□□ 0.2
VPS16-206ENST00000466415 NLRP6P59044 892 aa16.27■□□□□ 0.2
VPS16-206ENST00000466415 BRINP3Q76B58 766 aa16.27■□□□□ 0.2
VPS16-206ENST00000466415 TRPM3Q9HCF6 1732 aaPredicted RBP16.26■□□□□ 0.19
VPS16-206ENST00000466415 MTHFSP49914 203 aa16.26■□□□□ 0.19
VPS16-206ENST00000466415 WDR43Q15061 677 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS16-206ENST00000466415 USP54Q70EL1 1684 aa16.26■□□□□ 0.19
VPS16-206ENST00000466415 AATKQ6ZMQ8 1374 aa16.26■□□□□ 0.19
VPS16-206ENST00000466415 LMOD2Q6P5Q4 547 aa16.25■□□□□ 0.19
VPS16-206ENST00000466415 NUTM2GQ5VZR2 741 aa16.24■□□□□ 0.19
VPS16-206ENST00000466415 PNISRQ8TF01 805 aaKnown RBP16.24■□□□□ 0.19
VPS16-206ENST00000466415 SBNO1A3KN83 1393 aa16.24■□□□□ 0.19
VPS16-206ENST00000466415 TNS3Q68CZ2 1445 aa16.23■□□□□ 0.19
VPS16-206ENST00000466415 SOX12O15370 315 aa16.23■□□□□ 0.19
VPS16-206ENST00000466415 PXDNQ92626 1479 aa16.22■□□□□ 0.19
VPS16-206ENST00000466415 SMG6Q86US8 1419 aaKnown RBP16.22■□□□□ 0.19
VPS16-206ENST00000466415 PPM1GO15355 546 aaPredicted RBP16.22■□□□□ 0.19
VPS16-206ENST00000466415 DDX17Q92841 729 aaKnown RBP16.22■□□□□ 0.19
VPS16-206ENST00000466415 CDK12Q9NYV4 1490 aaPredicted RBP16.22■□□□□ 0.19
VPS16-206ENST00000466415 NHSL1Q5SYE7 1610 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 RRS1Q15050 365 aaKnown RBP16.2■□□□□ 0.18
VPS16-206ENST00000466415 POLKQ9UBT6 870 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 EMILIN1Q9Y6C2 1016 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 ARHGEF10O15013 1369 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 IQSEC2Q5JU85 1478 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 ALS2Q96Q42 1657 aa16.2■□□□□ 0.18
VPS16-206ENST00000466415 MARF1Q9Y4F3 1742 aaKnown RBP16.19■□□□□ 0.18
VPS16-206ENST00000466415 ROBO1Q9Y6N7 1651 aa16.19■□□□□ 0.18
VPS16-206ENST00000466415 TOM1O60784 492 aa16.19■□□□□ 0.18
VPS16-206ENST00000466415 HNRNPUQ00839 825 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS16-206ENST00000466415 KCNH5Q8NCM2 988 aa16.19■□□□□ 0.18
VPS16-206ENST00000466415 NUDCQ9Y266 331 aa16.19■□□□□ 0.18
VPS16-206ENST00000466415 FBLN1P23142 703 aa16.18■□□□□ 0.18
VPS16-206ENST00000466415 SLIT3O75094 1523 aa16.18■□□□□ 0.18
VPS16-206ENST00000466415 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
VPS16-206ENST00000466415 MAP2P11137 1827 aaKnown RBP16.17■□□□□ 0.18
VPS16-206ENST00000466415 COL3A1P02461 1466 aaPredicted RBP16.17■□□□□ 0.18
VPS16-206ENST00000466415 INSRP06213 1382 aa16.17■□□□□ 0.18
VPS16-206ENST00000466415 DIAPH1O60610 1272 aaKnown RBP16.17■□□□□ 0.18
VPS16-206ENST00000466415 PLEKHG5O94827 1062 aa16.17■□□□□ 0.18
VPS16-206ENST00000466415 CENPBP07199 599 aaPredicted RBP16.17■□□□□ 0.18
VPS16-206ENST00000466415 SOS2Q07890 1332 aaPredicted RBP16.17■□□□□ 0.18
VPS16-206ENST00000466415 SPATA31A3Q5VYP0 1347 aa16.17■□□□□ 0.18
VPS16-206ENST00000466415 PNPLA6Q8IY17 1366 aa16.16■□□□□ 0.18
VPS16-206ENST00000466415 AMPHP49418 695 aa16.16■□□□□ 0.18
VPS16-206ENST00000466415 USP19O94966 1318 aa16.16■□□□□ 0.18
VPS16-206ENST00000466415 FLT4P35916 1363 aa16.15■□□□□ 0.18
VPS16-206ENST00000466415 NFAT5O94916 1531 aa16.15■□□□□ 0.18
VPS16-206ENST00000466415 U2SURPO15042 1029 aaKnown RBP16.15■□□□□ 0.18
VPS16-206ENST00000466415 BLMP54132 1417 aaPredicted RBP16.15■□□□□ 0.18
VPS16-206ENST00000466415 ADAMTS8Q9UP79 889 aa16.15■□□□□ 0.18
VPS16-206ENST00000466415 AHDC1Q5TGY3 1603 aaPredicted RBP16.15■□□□□ 0.18
VPS16-206ENST00000466415 MAP3K19Q56UN5 1328 aa16.15■□□□□ 0.18
VPS16-206ENST00000466415 RTL1A6NKG5 1358 aa16.14■□□□□ 0.17
VPS16-206ENST00000466415 MED1Q15648 1581 aaPredicted RBP16.14■□□□□ 0.17
VPS16-206ENST00000466415 ZBTB7CA1YPR0 619 aa16.14■□□□□ 0.17
VPS16-206ENST00000466415 UBAP1LF5GYI3 381 aa16.14■□□□□ 0.17
VPS16-206ENST00000466415 KIF24Q5T7B8 1368 aa16.13■□□□□ 0.17
VPS16-206ENST00000466415 PHRF1Q9P1Y6 1649 aaKnown RBP16.13■□□□□ 0.17
VPS16-206ENST00000466415 U2AF1L5P0DN76 240 aaPredicted RBP16.13■□□□□ 0.17
VPS16-206ENST00000466415 PIP4K2BP78356 416 aa16.13■□□□□ 0.17
VPS16-206ENST00000466415 U2AF1Q01081 240 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS16-206ENST00000466415 PEAK1Q9H792 1746 aa16.13■□□□□ 0.17
VPS16-206ENST00000466415 GCP02774 474 aa16.12■□□□□ 0.17
VPS16-206ENST00000466415 CERKQ8TCT0 537 aa16.12■□□□□ 0.17
VPS16-206ENST00000466415 LTN1O94822 1766 aa16.11■□□□□ 0.17
VPS16-206ENST00000466415 HAP1P54257 671 aaPredicted RBP16.11■□□□□ 0.17
VPS16-206ENST00000466415 PHLPP1O60346 1717 aa16.09■□□□□ 0.17
VPS16-206ENST00000466415 HOXC9P31274 260 aa16.09■□□□□ 0.17
VPS16-206ENST00000466415 CCDC146Q8IYE0 955 aa16.09■□□□□ 0.17
VPS16-206ENST00000466415 PNNQ9H307 717 aaKnown RBP16.09■□□□□ 0.17
VPS16-206ENST00000466415 IL13P35225 146 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms