RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TONSLQ96HA7 1378 aa31.19■■■□□ 2.58
LIME1-203ENST00000465591 PLEKHG3A1L390 1219 aa31.19■■■□□ 2.58
LIME1-203ENST00000465591 SRPK2P78362 688 aaKnown RBP31.19■■■□□ 2.58
LIME1-203ENST00000465591 PAK3O75914 559 aaPredicted RBP31.18■■■□□ 2.58
LIME1-203ENST00000465591 UNC5CLQ8IV45 518 aa31.16■■■□□ 2.58
LIME1-203ENST00000465591 PPIP5K1Q6PFW1 1433 aa31.15■■■□□ 2.58
LIME1-203ENST00000465591 NWD2Q9ULI1 1742 aa31.15■■■□□ 2.58
LIME1-203ENST00000465591 FAM83GA6ND36 823 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 UPF1Q92900 1129 aaKnown RBP eCLIP31.13■■■□□ 2.57
LIME1-203ENST00000465591 RALGAPBQ86X10 1494 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 GLI3P10071 1580 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 GJD4Q96KN9 370 aaPredicted RBP31.12■■■□□ 2.57
LIME1-203ENST00000465591 PHRF1Q9P1Y6 1649 aaKnown RBP31.09■■■□□ 2.57
LIME1-203ENST00000465591 NRAPQ86VF7 1730 aa31.09■■■□□ 2.57
LIME1-203ENST00000465591 EVC2Q86UK5 1308 aa31.08■■■□□ 2.57
LIME1-203ENST00000465591 NUTM2GQ5VZR2 741 aa31.08■■■□□ 2.57
LIME1-203ENST00000465591 CARD11Q9BXL7 1154 aa31.07■■■□□ 2.56
LIME1-203ENST00000465591 CABP1Q9NZU7 370 aa31.07■■■□□ 2.56
LIME1-203ENST00000465591 COL14A1Q05707 1796 aaKnown RBP31.07■■■□□ 2.56
LIME1-203ENST00000465591 VPS72Q15906 364 aa31.03■■■□□ 2.56
LIME1-203ENST00000465591 USP6P35125 1406 aa31■■■□□ 2.55
LIME1-203ENST00000465591 BTG4Q9NY30 223 aa31■■■□□ 2.55
LIME1-203ENST00000465591 BRWD3Q6RI45 1802 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 ABTB2Q8N961 1025 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 KIAA0232Q92628 1395 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 SBNO2Q9Y2G9 1366 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 NRKQ7Z2Y5 1582 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 PRDM11Q9NQV5 511 aa30.97■■■□□ 2.55
LIME1-203ENST00000465591 AKAP12Q02952 1782 aa30.97■■■□□ 2.55
LIME1-203ENST00000465591 SSH2Q76I76 1423 aa30.96■■■□□ 2.55
LIME1-203ENST00000465591 USP19O94966 1318 aa30.96■■■□□ 2.55
LIME1-203ENST00000465591 ATAD2Q6PL18 1390 aa30.95■■■□□ 2.55
LIME1-203ENST00000465591 ZC3H6P61129 1189 aaKnown RBP30.95■■■□□ 2.55
LIME1-203ENST00000465591 CHRNA2Q15822 529 aa30.95■■■□□ 2.55
LIME1-203ENST00000465591 CCDC9Q9Y3X0 531 aaKnown RBP30.95■■■□□ 2.55
LIME1-203ENST00000465591 PCGF6Q9BYE7 350 aa30.94■■■□□ 2.54
LIME1-203ENST00000465591 BRD4O60885 1362 aaPredicted RBP30.93■■■□□ 2.54
LIME1-203ENST00000465591 PIK3C2AO00443 1686 aa30.93■■■□□ 2.54
LIME1-203ENST00000465591 SEPT12Q8IYM1 358 aa30.9■■■□□ 2.54
LIME1-203ENST00000465591 EP400Q96L91 3159 aa30.9■■■□□ 2.54
LIME1-203ENST00000465591 ONECUT3O60422 494 aaPredicted RBP30.89■■■□□ 2.54
LIME1-203ENST00000465591 NLRP13Q86W25 1043 aa30.89■■■□□ 2.54
LIME1-203ENST00000465591 CPSF1Q10570 1443 aaKnown RBP30.89■■■□□ 2.53
LIME1-203ENST00000465591 GCP02774 474 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 LMO7Q8WWI1 1683 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 MON2Q7Z3U7 1717 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 SLIT3O75094 1523 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 CPDO75976 1380 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 SPATA31A5Q5VU36 1347 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 SPATA31A7Q8IWB4 1347 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 CAMTA1Q9Y6Y1 1673 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 TTC21BQ7Z4L5 1316 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 NLRP6P59044 892 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 TESK2Q96S53 571 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 CD163L1Q9NR16 1453 aa30.83■■■□□ 2.53
LIME1-203ENST00000465591 ST20-MTHFSA0A0A6YYL1 179 aa30.83■■■□□ 2.53
LIME1-203ENST00000465591 FAM98CQ17RN3 349 aaKnown RBP30.83■■■□□ 2.53
LIME1-203ENST00000465591 ZNF692Q9BU19 519 aaPredicted RBP30.83■■■□□ 2.53
LIME1-203ENST00000465591 STRN4Q9NRL3 753 aa30.81■■■□□ 2.52
LIME1-203ENST00000465591 KTN1Q86UP2 1357 aaKnown RBP30.8■■■□□ 2.52
LIME1-203ENST00000465591 CLSPNQ9HAW4 1339 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 THSD7AQ9UPZ6 1657 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 SLC12A5Q9H2X9 1139 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 SPATA31A1Q5TZJ5 1347 aa30.77■■■□□ 2.52
LIME1-203ENST00000465591 A0A0G2JS52 829 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 MYT1Q01538 1121 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 TMC1Q8TDI8 760 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 TTC21AQ8NDW8 1320 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 COL18A1P39060 1754 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 KRT27Q7Z3Y8 459 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 USP47Q96K76 1375 aa30.74■■■□□ 2.51
LIME1-203ENST00000465591 LARP1Q6PKG0 1096 aaKnown RBP30.73■■■□□ 2.51
LIME1-203ENST00000465591 PUS7Q96PZ0 661 aaKnown RBP30.73■■■□□ 2.51
LIME1-203ENST00000465591 ZRANB1Q9UGI0 708 aa30.73■■■□□ 2.51
LIME1-203ENST00000465591 ZBTB7CA1YPR0 619 aa30.72■■■□□ 2.51
LIME1-203ENST00000465591 COL5A2P05997 1499 aaPredicted RBP30.71■■■□□ 2.51
LIME1-203ENST00000465591 EVA1CP58658 441 aa30.71■■■□□ 2.51
LIME1-203ENST00000465591 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.71■■■□□ 2.51
LIME1-203ENST00000465591 TIMELESSQ9UNS1 1208 aa30.71■■■□□ 2.51
LIME1-203ENST00000465591 A0A1W2PP64 1363 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 AATKQ6ZMQ8 1374 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 USP54Q70EL1 1684 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 USP35Q9P2H5 1018 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 NFAT5O94916 1531 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 SOX12O15370 315 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 RGPD5Q99666 1765 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 BLMP54132 1417 aaPredicted RBP30.67■■■□□ 2.5
LIME1-203ENST00000465591 NME9Q86XW9 330 aa30.67■■■□□ 2.5
LIME1-203ENST00000465591 CCDC125Q86Z20 511 aa30.67■■■□□ 2.5
LIME1-203ENST00000465591 FAM182BQ5T319 152 aa30.66■■■□□ 2.5
LIME1-203ENST00000465591 HDGFL2Q7Z4V5 671 aaPredicted RBP30.66■■■□□ 2.5
LIME1-203ENST00000465591 USP31Q70CQ4 1352 aa30.66■■■□□ 2.5
LIME1-203ENST00000465591 ARHGEF25Q86VW2 580 aa30.65■■■□□ 2.5
LIME1-203ENST00000465591 AXIN2Q9Y2T1 843 aa30.65■■■□□ 2.5
LIME1-203ENST00000465591 EDC4Q6P2E9 1401 aaKnown RBP30.64■■■□□ 2.5
LIME1-203ENST00000465591 KCNH5Q8NCM2 988 aa30.63■■■□□ 2.49
LIME1-203ENST00000465591 TERF2IPQ9NYB0 399 aa30.63■■■□□ 2.49
LIME1-203ENST00000465591 BARGINQ6ZT62 677 aa30.62■■■□□ 2.49
LIME1-203ENST00000465591 CCER1Q8TC90 406 aaPredicted RBP30.62■■■□□ 2.49
LIME1-203ENST00000465591 CRB1P82279 1406 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms