RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 NBPF1Q3BBV0 1214 aa16.52■□□□□ 0.24
USP54-209ENST00000464635 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
USP54-209ENST00000464635 TRPM1Q7Z4N2 1603 aa16.52■□□□□ 0.23
USP54-209ENST00000464635 ARHGEF10O15013 1369 aa16.51■□□□□ 0.23
USP54-209ENST00000464635 GPRASP1Q5JY77 1395 aa16.51■□□□□ 0.23
USP54-209ENST00000464635 PHRF1Q9P1Y6 1649 aaKnown RBP16.49■□□□□ 0.23
USP54-209ENST00000464635 HAP1P54257 671 aaPredicted RBP16.49■□□□□ 0.23
USP54-209ENST00000464635 COL14A1Q05707 1796 aaKnown RBP16.47■□□□□ 0.23
USP54-209ENST00000464635 UNC5CLQ8IV45 518 aa16.47■□□□□ 0.23
USP54-209ENST00000464635 NGDNQ8NEJ9 315 aaKnown RBP16.46■□□□□ 0.23
USP54-209ENST00000464635 NUDT16Q96DE0 195 aaKnown RBP16.46■□□□□ 0.23
USP54-209ENST00000464635 GJD4Q96KN9 370 aaPredicted RBP16.46■□□□□ 0.23
USP54-209ENST00000464635 CDK19Q9BWU1 502 aa16.46■□□□□ 0.23
USP54-209ENST00000464635 ATAD2Q6PL18 1390 aa16.46■□□□□ 0.23
USP54-209ENST00000464635 EP400Q96L91 3159 aa16.45■□□□□ 0.22
USP54-209ENST00000464635 HSPA5P11021 654 aaKnown RBP16.44■□□□□ 0.22
USP54-209ENST00000464635 POLR3AO14802 1390 aaPredicted RBP16.42■□□□□ 0.22
USP54-209ENST00000464635 FAM83GA6ND36 823 aa16.42■□□□□ 0.22
USP54-209ENST00000464635 PAK3O75914 559 aaPredicted RBP16.42■□□□□ 0.22
USP54-209ENST00000464635 CENPJQ9HC77 1338 aaPredicted RBP16.42■□□□□ 0.22
USP54-209ENST00000464635 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
USP54-209ENST00000464635 NRKQ7Z2Y5 1582 aa16.41■□□□□ 0.22
USP54-209ENST00000464635 VPS72Q15906 364 aa16.4■□□□□ 0.22
USP54-209ENST00000464635 ACEP12821 1306 aa16.4■□□□□ 0.22
USP54-209ENST00000464635 PPIP5K1Q6PFW1 1433 aa16.39■□□□□ 0.21
USP54-209ENST00000464635 CARD11Q9BXL7 1154 aa16.39■□□□□ 0.21
USP54-209ENST00000464635 ROCK2O75116 1388 aaKnown RBP16.38■□□□□ 0.21
USP54-209ENST00000464635 USP47Q96K76 1375 aa16.38■□□□□ 0.21
USP54-209ENST00000464635 NUTM2GQ5VZR2 741 aa16.38■□□□□ 0.21
USP54-209ENST00000464635 CABP2Q9NPB3 220 aa16.38■□□□□ 0.21
USP54-209ENST00000464635 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
USP54-209ENST00000464635 CCDC61Q9Y6R9 512 aa16.38■□□□□ 0.21
USP54-209ENST00000464635 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
USP54-209ENST00000464635 BTG4Q9NY30 223 aa16.37■□□□□ 0.21
USP54-209ENST00000464635 SRPK2P78362 688 aaKnown RBP16.36■□□□□ 0.21
USP54-209ENST00000464635 SEPT12Q8IYM1 358 aa16.36■□□□□ 0.21
USP54-209ENST00000464635 THSD7AQ9UPZ6 1657 aa16.36■□□□□ 0.21
USP54-209ENST00000464635 KIAA0232Q92628 1395 aa16.36■□□□□ 0.21
USP54-209ENST00000464635 AKAP12Q02952 1782 aa16.36■□□□□ 0.21
USP54-209ENST00000464635 PIK3C2AO00443 1686 aa16.34■□□□□ 0.21
USP54-209ENST00000464635 LMO7Q8WWI1 1683 aa16.34■□□□□ 0.21
USP54-209ENST00000464635 CHRNA2Q15822 529 aa16.33■□□□□ 0.2
USP54-209ENST00000464635 PRDM11Q9NQV5 511 aa16.33■□□□□ 0.2
USP54-209ENST00000464635 ONECUT3O60422 494 aaPredicted RBP16.32■□□□□ 0.2
USP54-209ENST00000464635 WASHC2AQ641Q2 1341 aa16.32■□□□□ 0.2
USP54-209ENST00000464635 CCDC7Q96M83 1385 aa16.32■□□□□ 0.2
USP54-209ENST00000464635 USP6P35125 1406 aa16.31■□□□□ 0.2
USP54-209ENST00000464635 USP19O94966 1318 aa16.31■□□□□ 0.2
USP54-209ENST00000464635 ZC3H6P61129 1189 aaKnown RBP16.31■□□□□ 0.2
USP54-209ENST00000464635 FAM98CQ17RN3 349 aaKnown RBP16.31■□□□□ 0.2
USP54-209ENST00000464635 BLMP54132 1417 aaPredicted RBP16.3■□□□□ 0.2
USP54-209ENST00000464635 SPATA31A5Q5VU36 1347 aa16.3■□□□□ 0.2
USP54-209ENST00000464635 SPATA31A7Q8IWB4 1347 aa16.3■□□□□ 0.2
USP54-209ENST00000464635 A0A0G2JS52 829 aa16.3■□□□□ 0.2
USP54-209ENST00000464635 MYT1Q01538 1121 aa16.3■□□□□ 0.2
USP54-209ENST00000464635 CAMTA1Q9Y6Y1 1673 aa16.3■□□□□ 0.2
USP54-209ENST00000464635 ABTB2Q8N961 1025 aa16.29■□□□□ 0.2
USP54-209ENST00000464635 CABP1Q9NZU7 370 aa16.29■□□□□ 0.2
USP54-209ENST00000464635 SLIT3O75094 1523 aa16.29■□□□□ 0.2
USP54-209ENST00000464635 MON2Q7Z3U7 1717 aa16.28■□□□□ 0.2
USP54-209ENST00000464635 EVC2Q86UK5 1308 aa16.28■□□□□ 0.2
USP54-209ENST00000464635 DDX10Q13206 875 aaKnown RBP16.28■□□□□ 0.2
USP54-209ENST00000464635 KRT27Q7Z3Y8 459 aa16.28■□□□□ 0.2
USP54-209ENST00000464635 SSH2Q76I76 1423 aa16.28■□□□□ 0.2
USP54-209ENST00000464635 CCDC125Q86Z20 511 aa16.27■□□□□ 0.2
USP54-209ENST00000464635 STRN4Q9NRL3 753 aa16.27■□□□□ 0.2
USP54-209ENST00000464635 RGPD1P0DJD0 1748 aa16.27■□□□□ 0.19
USP54-209ENST00000464635 TNS1Q9HBL0 1735 aaKnown RBP16.27■□□□□ 0.19
USP54-209ENST00000464635 ST20-MTHFSA0A0A6YYL1 179 aa16.26■□□□□ 0.19
USP54-209ENST00000464635 MIER1Q8N108 512 aa16.26■□□□□ 0.19
USP54-209ENST00000464635 COL18A1P39060 1754 aa16.26■□□□□ 0.19
USP54-209ENST00000464635 CPDO75976 1380 aa16.26■□□□□ 0.19
USP54-209ENST00000464635 SBNO2Q9Y2G9 1366 aa16.26■□□□□ 0.19
USP54-209ENST00000464635 KIF7Q2M1P5 1343 aa16.25■□□□□ 0.19
USP54-209ENST00000464635 SPATA31A1Q5TZJ5 1347 aa16.25■□□□□ 0.19
USP54-209ENST00000464635 DEFB132Q7Z7B7 95 aa16.25■□□□□ 0.19
USP54-209ENST00000464635 RGPD5Q99666 1765 aa16.25■□□□□ 0.19
USP54-209ENST00000464635 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
USP54-209ENST00000464635 C11orf95C9JLR9 678 aaPredicted RBP16.24■□□□□ 0.19
USP54-209ENST00000464635 FAM182BQ5T319 152 aa16.24■□□□□ 0.19
USP54-209ENST00000464635 WNK3Q9BYP7 1800 aa16.24■□□□□ 0.19
USP54-209ENST00000464635 COL5A2P05997 1499 aaPredicted RBP16.23■□□□□ 0.19
USP54-209ENST00000464635 CCER2I3L3R5 266 aa16.23■□□□□ 0.19
USP54-209ENST00000464635 GCP02774 474 aa16.23■□□□□ 0.19
USP54-209ENST00000464635 CDCA8Q53HL2 280 aa16.23■□□□□ 0.19
USP54-209ENST00000464635 NLRP13Q86W25 1043 aa16.23■□□□□ 0.19
USP54-209ENST00000464635 TESK2Q96S53 571 aa16.23■□□□□ 0.19
USP54-209ENST00000464635 CPSF1Q10570 1443 aaKnown RBP16.21■□□□□ 0.19
USP54-209ENST00000464635 LARP1Q6PKG0 1096 aaKnown RBP16.21■□□□□ 0.19
USP54-209ENST00000464635 USP35Q9P2H5 1018 aa16.21■□□□□ 0.19
USP54-209ENST00000464635 PARP4Q9UKK3 1724 aaKnown RBP16.21■□□□□ 0.19
USP54-209ENST00000464635 USP54Q70EL1 1684 aa16.21■□□□□ 0.18
USP54-209ENST00000464635 ZBTB7CA1YPR0 619 aa16.2■□□□□ 0.18
USP54-209ENST00000464635 ANP32CO43423 234 aa16.2■□□□□ 0.18
USP54-209ENST00000464635 NLRP6P59044 892 aa16.2■□□□□ 0.18
USP54-209ENST00000464635 TMF1P82094 1093 aa16.2■□□□□ 0.18
USP54-209ENST00000464635 PUS7Q96PZ0 661 aaKnown RBP16.2■□□□□ 0.18
USP54-209ENST00000464635 CD163L1Q9NR16 1453 aa16.2■□□□□ 0.18
USP54-209ENST00000464635 TTC21BQ7Z4L5 1316 aa16.19■□□□□ 0.18
USP54-209ENST00000464635 NFAT5O94916 1531 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms