RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
USP48-206ENST00000464577 PPRC1Q5VV67 1664 aaKnown RBP9.18□□□□□ -0.94
USP48-206ENST00000464577 GZF1Q9H116 711 aaPredicted RBP9.18□□□□□ -0.94
USP48-206ENST00000464577 ABCC11Q96J66 1382 aa9.18□□□□□ -0.94
USP48-206ENST00000464577 CFAP74Q9C0B2 1584 aa9.18□□□□□ -0.94
USP48-206ENST00000464577 IL16Q14005 1332 aa9.18□□□□□ -0.94
USP48-206ENST00000464577 PPLO60437 1756 aa9.18□□□□□ -0.94
USP48-206ENST00000464577 HSP90AA1P07900 732 aaKnown RBP9.17□□□□□ -0.94
USP48-206ENST00000464577 MTHFSP49914 203 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 SKOR2Q2VWA4 1001 aaPredicted RBP9.17□□□□□ -0.94
USP48-206ENST00000464577 SPRYD3Q8NCJ5 442 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 NOS1P29475 1434 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 ESPNB1AK53 854 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 GBP4Q96PP9 640 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 REREQ9P2R6 1566 aa9.17□□□□□ -0.94
USP48-206ENST00000464577 ANKRD36BQ8N2N9 1353 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 TRIM27P14373 513 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 ATF7IPQ6VMQ6 1270 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 AFAP1Q8N556 730 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 SMC4Q9NTJ3 1288 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 RAB3GAP1Q15042 981 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 ARXQ96QS3 562 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 SLC12A5Q9H2X9 1139 aa9.16□□□□□ -0.94
USP48-206ENST00000464577 C14orf93Q9H972 538 aaKnown RBP9.16□□□□□ -0.94
USP48-206ENST00000464577 KIF16BQ96L93 1317 aa9.15□□□□□ -0.94
USP48-206ENST00000464577 COL3A1P02461 1466 aaPredicted RBP9.15□□□□□ -0.94
USP48-206ENST00000464577 NUCB1Q02818 461 aa9.15□□□□□ -0.94
USP48-206ENST00000464577 ZBTB40Q9NUA8 1239 aa9.15□□□□□ -0.94
USP48-206ENST00000464577 CD109Q6YHK3 1445 aa9.15□□□□□ -0.94
USP48-206ENST00000464577 TULP4Q9NRJ4 1543 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 KIF3BO15066 747 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 U2AF1L5P0DN76 240 aaPredicted RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 TNNT2P45379 298 aaPredicted RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 U2AF1Q01081 240 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP48-206ENST00000464577 ITPRIPQ8IWB1 547 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 TNPO1Q92973 898 aaKnown RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 ARHGAP31Q2M1Z3 1444 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 MED14O60244 1454 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 IBTKQ9P2D0 1353 aaPredicted RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 TPM2P07951 284 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 EXOSC9Q06265 439 aaKnown RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 HSP90AA2PQ14568 343 aaPredicted RBP9.14□□□□□ -0.95
USP48-206ENST00000464577 SSH1Q8WYL5 1049 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 PLEKHF1Q96S99 279 aa9.14□□□□□ -0.95
USP48-206ENST00000464577 GLI2P10070 1586 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 IPO8O15397 1037 aaKnown RBP9.13□□□□□ -0.95
USP48-206ENST00000464577 BMP2KLQ5H9B9 411 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 CLEC17AQ6ZS10 378 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 ERBB4Q15303 1308 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 RPGRIP1LQ68CZ1 1315 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 ARHGEF28Q8N1W1 1705 aaKnown RBP9.13□□□□□ -0.95
USP48-206ENST00000464577 ANKRD26Q9UPS8 1709 aa9.13□□□□□ -0.95
USP48-206ENST00000464577 HSP90AB1P08238 724 aaKnown RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 ALDH1L2Q3SY69 923 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 TSR2Q969E8 191 aaKnown RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 TRIM44Q96DX7 344 aaPredicted RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 TMPOP42166 694 aaKnown RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 BRPF1P55201 1214 aaPredicted RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 CCDC173Q0VFZ6 552 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 TMEM57Q8N5G2 664 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 NOB1Q9ULX3 412 aaKnown RBP9.12□□□□□ -0.95
USP48-206ENST00000464577 TRIM35Q9UPQ4 493 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 TRAK1Q9UPV9 953 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 EVC2Q86UK5 1308 aa9.12□□□□□ -0.95
USP48-206ENST00000464577 CDC42BPGQ6DT37 1551 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 CHD1LQ86WJ1 897 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 GAS2L3Q86XJ1 694 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 PPP1R9BQ96SB3 815 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 PPIP5K1Q6PFW1 1433 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 ZNF428Q96B54 188 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 KIF2CQ99661 725 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 CHMP4BQ9H444 224 aaKnown RBP9.11□□□□□ -0.95
USP48-206ENST00000464577 KIDINS220Q9ULH0 1771 aa9.11□□□□□ -0.95
USP48-206ENST00000464577 PIK3R4Q99570 1358 aa9.1□□□□□ -0.95
USP48-206ENST00000464577 K7ELQ4 463 aaPredicted RBP9.1□□□□□ -0.95
USP48-206ENST00000464577 GCC1Q96CN9 775 aa9.1□□□□□ -0.95
USP48-206ENST00000464577 GOLGA6L22H0YM25 854 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 PKNOX2Q96KN3 472 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 PIK3C2BO00750 1634 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 PTCH1Q13635 1447 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 NPATQ14207 1427 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 LNPKQ9C0E8 428 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 HECW2Q9P2P5 1572 aa9.09□□□□□ -0.95
USP48-206ENST00000464577 U3KPZ7 1027 aaPredicted RBP9.09□□□□□ -0.95
USP48-206ENST00000464577 TERF1P54274 439 aa9.08□□□□□ -0.96
USP48-206ENST00000464577 KLHL40Q2TBA0 621 aa9.08□□□□□ -0.96
USP48-206ENST00000464577 CFAP44Q96MT7 982 aa9.08□□□□□ -0.96
USP48-206ENST00000464577 ARHGAP45Q92619 1136 aa9.08□□□□□ -0.96
USP48-206ENST00000464577 CLTCQ00610 1675 aaKnown RBP9.07□□□□□ -0.96
USP48-206ENST00000464577 CAMSAP1Q5T5Y3 1602 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 ZFYVE9O95405 1425 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 A0A1W2PP64 1363 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 PNPLA6Q8IY17 1366 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 CAPN15O75808 1086 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 NASPP49321 788 aaPredicted RBP9.07□□□□□ -0.96
USP48-206ENST00000464577 HS1BP3Q53T59 392 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 ZSCAN30Q86W11 494 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 NEXMIFQ5QGS0 1516 aa9.07□□□□□ -0.96
USP48-206ENST00000464577 U2SURPO15042 1029 aaKnown RBP9.06□□□□□ -0.96
USP48-206ENST00000464577 ZNF445P59923 1031 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms