RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 POLR3AO14802 1390 aaPredicted RBP10.41□□□□□ -0.74
PTPRF-210ENST00000463041 ATAD2Q6PL18 1390 aa10.41□□□□□ -0.74
PTPRF-210ENST00000463041 ALS2Q96Q42 1657 aa10.41□□□□□ -0.74
PTPRF-210ENST00000463041 NWD2Q9ULI1 1742 aa10.41□□□□□ -0.74
PTPRF-210ENST00000463041 EVC2Q86UK5 1308 aa10.4□□□□□ -0.74
PTPRF-210ENST00000463041 CABP2Q9NPB3 220 aa10.4□□□□□ -0.74
PTPRF-210ENST00000463041 BTG4Q9NY30 223 aa10.4□□□□□ -0.74
PTPRF-210ENST00000463041 CCDC9Q9Y3X0 531 aaKnown RBP10.4□□□□□ -0.74
PTPRF-210ENST00000463041 EP400Q96L91 3159 aa10.4□□□□□ -0.75
PTPRF-210ENST00000463041 RALGAPBQ86X10 1494 aa10.39□□□□□ -0.75
PTPRF-210ENST00000463041 ABTB2Q8N961 1025 aa10.39□□□□□ -0.75
PTPRF-210ENST00000463041 CABP1Q9NZU7 370 aa10.39□□□□□ -0.75
PTPRF-210ENST00000463041 BRD4O60885 1362 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-210ENST00000463041 ROCK2O75116 1388 aaKnown RBP10.39□□□□□ -0.75
PTPRF-210ENST00000463041 TRPM1Q7Z4N2 1603 aa10.38□□□□□ -0.75
PTPRF-210ENST00000463041 NLRP13Q86W25 1043 aa10.38□□□□□ -0.75
PTPRF-210ENST00000463041 SEPT12Q8IYM1 358 aa10.38□□□□□ -0.75
PTPRF-210ENST00000463041 ZNF692Q9BU19 519 aaPredicted RBP10.38□□□□□ -0.75
PTPRF-210ENST00000463041 PRDM11Q9NQV5 511 aa10.38□□□□□ -0.75
PTPRF-210ENST00000463041 ABCA3Q99758 1704 aa10.38□□□□□ -0.75
PTPRF-210ENST00000463041 ZC3H6P61129 1189 aaKnown RBP10.37□□□□□ -0.75
PTPRF-210ENST00000463041 NUTM2GQ5VZR2 741 aa10.37□□□□□ -0.75
PTPRF-210ENST00000463041 PPIP5K1Q6PFW1 1433 aa10.37□□□□□ -0.75
PTPRF-210ENST00000463041 PLCH1Q4KWH8 1693 aa10.37□□□□□ -0.75
PTPRF-210ENST00000463041 QRICH2Q9H0J4 1663 aa10.37□□□□□ -0.75
PTPRF-210ENST00000463041 COL14A1Q05707 1796 aaKnown RBP10.37□□□□□ -0.75
PTPRF-210ENST00000463041 GLI3P10071 1580 aa10.36□□□□□ -0.75
PTPRF-210ENST00000463041 CARD11Q9BXL7 1154 aa10.36□□□□□ -0.75
PTPRF-210ENST00000463041 TOPAZ1Q8N9V7 1692 aa10.36□□□□□ -0.75
PTPRF-210ENST00000463041 TONSLQ96HA7 1378 aa10.36□□□□□ -0.75
PTPRF-210ENST00000463041 BRWD3Q6RI45 1802 aa10.35□□□□□ -0.75
PTPRF-210ENST00000463041 GCP02774 474 aa10.35□□□□□ -0.75
PTPRF-210ENST00000463041 EVA1CP58658 441 aa10.35□□□□□ -0.75
PTPRF-210ENST00000463041 KRT27Q7Z3Y8 459 aa10.35□□□□□ -0.75
PTPRF-210ENST00000463041 KIAA0232Q92628 1395 aa10.35□□□□□ -0.75
PTPRF-210ENST00000463041 SPATA31A5Q5VU36 1347 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 SPATA31A7Q8IWB4 1347 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 CRYBG1Q9Y4K1 1723 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 SLC24A1O60721 1099 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 NLRP6P59044 892 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 CHRNA2Q15822 529 aa10.34□□□□□ -0.75
PTPRF-210ENST00000463041 FAM98CQ17RN3 349 aaKnown RBP10.34□□□□□ -0.75
PTPRF-210ENST00000463041 USP19O94966 1318 aa10.33□□□□□ -0.76
PTPRF-210ENST00000463041 NRAPQ86VF7 1730 aa10.33□□□□□ -0.76
PTPRF-210ENST00000463041 CPDO75976 1380 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 SBNO2Q9Y2G9 1366 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 A0A0G2JS52 829 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 MYT1Q01538 1121 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 SF3B2Q13435 895 aaKnown RBP10.32□□□□□ -0.76
PTPRF-210ENST00000463041 PUS7Q96PZ0 661 aaKnown RBP10.32□□□□□ -0.76
PTPRF-210ENST00000463041 STRN4Q9NRL3 753 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 USP6P35125 1406 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 SPATA31A1Q5TZJ5 1347 aa10.32□□□□□ -0.76
PTPRF-210ENST00000463041 PHRF1Q9P1Y6 1649 aaKnown RBP10.31□□□□□ -0.76
PTPRF-210ENST00000463041 BLMP54132 1417 aaPredicted RBP10.31□□□□□ -0.76
PTPRF-210ENST00000463041 SSH2Q76I76 1423 aa10.31□□□□□ -0.76
PTPRF-210ENST00000463041 TTC21BQ7Z4L5 1316 aa10.31□□□□□ -0.76
PTPRF-210ENST00000463041 KCNH5Q8NCM2 988 aa10.3□□□□□ -0.76
PTPRF-210ENST00000463041 ZRANB1Q9UGI0 708 aa10.3□□□□□ -0.76
PTPRF-210ENST00000463041 TTC21AQ8NDW8 1320 aa10.3□□□□□ -0.76
PTPRF-210ENST00000463041 BARGINQ6ZT62 677 aa10.29□□□□□ -0.76
PTPRF-210ENST00000463041 TIMELESSQ9UNS1 1208 aa10.29□□□□□ -0.76
PTPRF-210ENST00000463041 THRAP3Q9Y2W1 955 aaKnown RBP10.29□□□□□ -0.76
PTPRF-210ENST00000463041 CPSF1Q10570 1443 aaKnown RBP10.29□□□□□ -0.76
PTPRF-210ENST00000463041 CAMTA1Q9Y6Y1 1673 aa10.28□□□□□ -0.76
PTPRF-210ENST00000463041 KTN1Q86UP2 1357 aaKnown RBP10.28□□□□□ -0.76
PTPRF-210ENST00000463041 LARP1Q6PKG0 1096 aaKnown RBP10.28□□□□□ -0.76
PTPRF-210ENST00000463041 TCP11L2Q8N4U5 519 aa10.28□□□□□ -0.76
PTPRF-210ENST00000463041 TMC1Q8TDI8 760 aa10.28□□□□□ -0.76
PTPRF-210ENST00000463041 AATKQ6ZMQ8 1374 aa10.27□□□□□ -0.76
PTPRF-210ENST00000463041 AKAP12Q02952 1782 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 ST20-MTHFSA0A0A6YYL1 179 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 PDE3BQ13370 1112 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 FAM196AQ6ZSG2 479 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 HDGFL2Q7Z4V5 671 aaPredicted RBP10.27□□□□□ -0.77
PTPRF-210ENST00000463041 ARHGEF25Q86VW2 580 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 SLC12A5Q9H2X9 1139 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 USP35Q9P2H5 1018 aa10.27□□□□□ -0.77
PTPRF-210ENST00000463041 ZBTB7CA1YPR0 619 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 BAG6P46379 1132 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 DEFB132Q7Z7B7 95 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 TESK2Q96S53 571 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 TERF2IPQ9NYB0 399 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 SRCAPQ6ZRS2 3230 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 CLSPNQ9HAW4 1339 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 NRKQ7Z2Y5 1582 aa10.26□□□□□ -0.77
PTPRF-210ENST00000463041 SLIT3O75094 1523 aa10.25□□□□□ -0.77
PTPRF-210ENST00000463041 C11orf95C9JLR9 678 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-210ENST00000463041 LMO7Q8WWI1 1683 aa10.25□□□□□ -0.77
PTPRF-210ENST00000463041 FAM182BQ5T319 152 aa10.24□□□□□ -0.77
PTPRF-210ENST00000463041 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.24□□□□□ -0.77
PTPRF-210ENST00000463041 AXIN2Q9Y2T1 843 aa10.24□□□□□ -0.77
PTPRF-210ENST00000463041 PIK3C2AO00443 1686 aa10.24□□□□□ -0.77
PTPRF-210ENST00000463041 THSD7AQ9UPZ6 1657 aa10.24□□□□□ -0.77
PTPRF-210ENST00000463041 USP31Q70CQ4 1352 aa10.24□□□□□ -0.77
PTPRF-210ENST00000463041 TOM1L2Q6ZVM7 507 aa10.23□□□□□ -0.77
PTPRF-210ENST00000463041 PCGF6Q9BYE7 350 aa10.23□□□□□ -0.77
PTPRF-210ENST00000463041 COL18A1P39060 1754 aa10.23□□□□□ -0.77
PTPRF-210ENST00000463041 CRB1P82279 1406 aa10.23□□□□□ -0.77
PTPRF-210ENST00000463041 COL5A2P05997 1499 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms