RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ATAD2Q6PL18 1390 aa15.92■□□□□ 0.14
HDAC4-208ENST00000463007 CABP2Q9NPB3 220 aa15.91■□□□□ 0.14
HDAC4-208ENST00000463007 E9PSI1 815 aa15.9■□□□□ 0.14
HDAC4-208ENST00000463007 WWC1Q8IX03 1113 aa15.9■□□□□ 0.14
HDAC4-208ENST00000463007 RIMS2Q9UQ26 1411 aa15.89■□□□□ 0.13
HDAC4-208ENST00000463007 UBR1Q8IWV7 1749 aa15.89■□□□□ 0.13
HDAC4-208ENST00000463007 BECN1Q14457 450 aa15.89■□□□□ 0.13
HDAC4-208ENST00000463007 MTHFSP49914 203 aa15.88■□□□□ 0.13
HDAC4-208ENST00000463007 UPF2Q9HAU5 1272 aaKnown RBP15.88■□□□□ 0.13
HDAC4-208ENST00000463007 CCDC27Q2M243 656 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 PRAM1Q96QH2 718 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 CPS1P31327 1500 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 ATP7BP35670 1465 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 RLBP1P12271 317 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 PNPLA6Q8IY17 1366 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 MFAP1P55081 439 aaKnown RBP15.87■□□□□ 0.13
HDAC4-208ENST00000463007 RUNDC1Q96C34 613 aa15.87■□□□□ 0.13
HDAC4-208ENST00000463007 TECPR2O15040 1411 aa15.86■□□□□ 0.13
HDAC4-208ENST00000463007 PCDHB15Q9Y5E8 787 aa15.86■□□□□ 0.13
HDAC4-208ENST00000463007 MON2Q7Z3U7 1717 aa15.86■□□□□ 0.13
HDAC4-208ENST00000463007 USP19O94966 1318 aa15.85■□□□□ 0.13
HDAC4-208ENST00000463007 SAFB2Q14151 953 aaKnown RBP eCLIP15.85■□□□□ 0.13
HDAC4-208ENST00000463007 STK26Q9P289 416 aa15.84■□□□□ 0.13
HDAC4-208ENST00000463007 PDZRN3Q9UPQ7 1066 aa15.84■□□□□ 0.13
HDAC4-208ENST00000463007 AKAP12Q02952 1782 aa15.84■□□□□ 0.13
HDAC4-208ENST00000463007 FYB1O15117 783 aa15.83■□□□□ 0.12
HDAC4-208ENST00000463007 PANK2Q9BZ23 570 aa15.83■□□□□ 0.12
HDAC4-208ENST00000463007 TCP11L2Q8N4U5 519 aa15.83■□□□□ 0.12
HDAC4-208ENST00000463007 PLEKHF1Q96S99 279 aa15.83■□□□□ 0.12
HDAC4-208ENST00000463007 CPSF1Q10570 1443 aaKnown RBP15.82■□□□□ 0.12
HDAC4-208ENST00000463007 FOXD4L1Q9NU39 408 aa15.82■□□□□ 0.12
HDAC4-208ENST00000463007 WDR63Q8IWG1 891 aa15.82■□□□□ 0.12
HDAC4-208ENST00000463007 MINK1Q8N4C8 1332 aaPredicted RBP15.82■□□□□ 0.12
HDAC4-208ENST00000463007 ZMYM3Q14202 1370 aa15.81■□□□□ 0.12
HDAC4-208ENST00000463007 NAP1L5Q96NT1 182 aaPredicted RBP15.81■□□□□ 0.12
HDAC4-208ENST00000463007 TBC1D2Q9BYX2 928 aa15.81■□□□□ 0.12
HDAC4-208ENST00000463007 RRAGDQ9NQL2 400 aaPredicted RBP15.81■□□□□ 0.12
HDAC4-208ENST00000463007 C3P01024 1663 aa15.81■□□□□ 0.12
HDAC4-208ENST00000463007 VIRMAQ69YN4 1812 aaKnown RBP15.81■□□□□ 0.12
HDAC4-208ENST00000463007 TOPAZ1Q8N9V7 1692 aa15.8■□□□□ 0.12
HDAC4-208ENST00000463007 METP08581 1390 aa15.8■□□□□ 0.12
HDAC4-208ENST00000463007 FAM135BQ49AJ0 1406 aa15.8■□□□□ 0.12
HDAC4-208ENST00000463007 FTSJ3Q8IY81 847 aaKnown RBP15.8■□□□□ 0.12
HDAC4-208ENST00000463007 TSR2Q969E8 191 aaKnown RBP15.8■□□□□ 0.12
HDAC4-208ENST00000463007 SRPK2P78362 688 aaKnown RBP15.8■□□□□ 0.12
HDAC4-208ENST00000463007 NRKQ7Z2Y5 1582 aa15.8■□□□□ 0.12
HDAC4-208ENST00000463007 CDK19Q9BWU1 502 aa15.79■□□□□ 0.12
HDAC4-208ENST00000463007 CFAP53Q96M91 514 aa15.79■□□□□ 0.12
HDAC4-208ENST00000463007 U2AF1L5P0DN76 240 aaPredicted RBP15.78■□□□□ 0.12
HDAC4-208ENST00000463007 U2AF1Q01081 240 aaKnown RBP eCLIP15.78■□□□□ 0.12
HDAC4-208ENST00000463007 TERF2IPQ9NYB0 399 aa15.78■□□□□ 0.12
HDAC4-208ENST00000463007 MAP2P11137 1827 aaKnown RBP15.78■□□□□ 0.12
HDAC4-208ENST00000463007 LRRC7Q96NW7 1537 aa15.78■□□□□ 0.12
HDAC4-208ENST00000463007 U2SURPO15042 1029 aaKnown RBP15.77■□□□□ 0.12
HDAC4-208ENST00000463007 PDE3AQ14432 1141 aa15.77■□□□□ 0.12
HDAC4-208ENST00000463007 RARSP54136 660 aaKnown RBP15.77■□□□□ 0.12
HDAC4-208ENST00000463007 MAPK8IP3Q9UPT6 1336 aa15.77■□□□□ 0.12
HDAC4-208ENST00000463007 GGNBP2Q9H3C7 697 aa15.77■□□□□ 0.11
HDAC4-208ENST00000463007 ITSN1Q15811 1721 aa15.76■□□□□ 0.11
HDAC4-208ENST00000463007 SIRT1Q96EB6 747 aa15.76■□□□□ 0.11
HDAC4-208ENST00000463007 ADAMTS13Q76LX8 1427 aa15.76■□□□□ 0.11
HDAC4-208ENST00000463007 ITPRIPQ8IWB1 547 aa15.75■□□□□ 0.11
HDAC4-208ENST00000463007 FAM43AQ8N2R8 423 aa15.75■□□□□ 0.11
HDAC4-208ENST00000463007 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.75■□□□□ 0.11
HDAC4-208ENST00000463007 WAPLQ7Z5K2 1190 aa15.75■□□□□ 0.11
HDAC4-208ENST00000463007 CABP1Q9NZU7 370 aa15.75■□□□□ 0.11
HDAC4-208ENST00000463007 GOLGA6L3A6NEY3 463 aa15.74■□□□□ 0.11
HDAC4-208ENST00000463007 EDC4Q6P2E9 1401 aaKnown RBP15.74■□□□□ 0.11
HDAC4-208ENST00000463007 TNRQ92752 1358 aa15.74■□□□□ 0.11
HDAC4-208ENST00000463007 XRCC6P12956 609 aaKnown RBP eCLIP15.73■□□□□ 0.11
HDAC4-208ENST00000463007 TMEM2Q9UHN6 1383 aa15.73■□□□□ 0.11
HDAC4-208ENST00000463007 PMFBP1Q8TBY8 1022 aa15.73■□□□□ 0.11
HDAC4-208ENST00000463007 TRIM35Q9UPQ4 493 aa15.73■□□□□ 0.11
HDAC4-208ENST00000463007 RWDD1Q9H446 243 aaPredicted RBP15.73■□□□□ 0.11
HDAC4-208ENST00000463007 SMC4Q9NTJ3 1288 aa15.73■□□□□ 0.11
HDAC4-208ENST00000463007 NALCNQ8IZF0 1738 aa15.72■□□□□ 0.11
HDAC4-208ENST00000463007 CDK12Q9NYV4 1490 aaPredicted RBP15.72■□□□□ 0.11
HDAC4-208ENST00000463007 HSP90AA1P07900 732 aaKnown RBP15.72■□□□□ 0.11
HDAC4-208ENST00000463007 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.72■□□□□ 0.11
HDAC4-208ENST00000463007 C22orf23Q9BZE7 217 aa15.71■□□□□ 0.11
HDAC4-208ENST00000463007 PPIP5K1Q6PFW1 1433 aa15.71■□□□□ 0.11
HDAC4-208ENST00000463007 HDGFL2Q7Z4V5 671 aaPredicted RBP15.71■□□□□ 0.11
HDAC4-208ENST00000463007 TBC1D32Q96NH3 1257 aa15.71■□□□□ 0.11
HDAC4-208ENST00000463007 RSPH6AQ9H0K4 717 aa15.71■□□□□ 0.11
HDAC4-208ENST00000463007 STAG3Q9UJ98 1225 aa15.71■□□□□ 0.11
HDAC4-208ENST00000463007 SLIT1O75093 1534 aa15.7■□□□□ 0.1
HDAC4-208ENST00000463007 WASLO00401 505 aaPredicted RBP15.7■□□□□ 0.1
HDAC4-208ENST00000463007 L1TD1Q5T7N2 865 aaKnown RBP15.7■□□□□ 0.1
HDAC4-208ENST00000463007 AATKQ6ZMQ8 1374 aa15.7■□□□□ 0.1
HDAC4-208ENST00000463007 TMPOP42166 694 aaKnown RBP15.69■□□□□ 0.1
HDAC4-208ENST00000463007 ARHGAP23Q9P227 1491 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 IL16Q14005 1332 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 MCM4P33991 863 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 MLECQ14165 292 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 LNPKQ9C0E8 428 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 ANTXR1Q9H6X2 564 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 TRAK2O60296 914 aa15.69■□□□□ 0.1
HDAC4-208ENST00000463007 POLKQ9UBT6 870 aa15.68■□□□□ 0.1
HDAC4-208ENST00000463007 PNNQ9H307 717 aaKnown RBP15.68■□□□□ 0.1
HDAC4-208ENST00000463007 ROBO2Q9HCK4 1378 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 586.7 ms