RNA–Protein interactions for RNA: ENST00000462212.5

ITSN1-222, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,102 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-222	ENST00000462212	SLIT2	O94813	1529 aa		11.84	□□□□□ -0.51
ITSN1-222	ENST00000462212	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	TESK2	Q96S53	571 aa		11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	CABP1	Q9NZU7	370 aa		11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	USP21	Q9UK80	565 aa		11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	ATRN	O75882	1429 aa		11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	SSH2	Q76I76	1423 aa		11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.83	□□□□□ -0.52
ITSN1-222	ENST00000462212	PAK3	O75914	559 aa	Predicted RBP	11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	RXRB	P28702	533 aa		11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	CCER1	Q8TC90	406 aa	Predicted RBP	11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	PUS7	Q96PZ0	661 aa	Known RBP	11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	QTRT2	Q9H974	415 aa	Known RBP	11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	USP6	P35125	1406 aa		11.82	□□□□□ -0.52
ITSN1-222	ENST00000462212	CPSF1	Q10570	1443 aa	Known RBP	11.81	□□□□□ -0.52
ITSN1-222	ENST00000462212	ST20-MTHFS	A0A0A6YYL1	179 aa		11.81	□□□□□ -0.52
ITSN1-222	ENST00000462212	RBM6	P78332	1123 aa	Known RBP	11.81	□□□□□ -0.52
ITSN1-222	ENST00000462212	TRPC5	Q9UL62	973 aa	Predicted RBP	11.81	□□□□□ -0.52
ITSN1-222	ENST00000462212	USP47	Q96K76	1375 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	NWD2	Q9ULI1	1742 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	AKAP12	Q02952	1782 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	ADRA2B	P18089	450 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	HAP1	P54257	671 aa	Predicted RBP	11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	PIAS4	Q8N2W9	510 aa	Predicted RBP	11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	PLCH1	Q4KWH8	1693 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	USP19	O94966	1318 aa		11.8	□□□□□ -0.52
ITSN1-222	ENST00000462212	FAM83G	A6ND36	823 aa		11.79	□□□□□ -0.52
ITSN1-222	ENST00000462212	SLC24A1	O60721	1099 aa		11.79	□□□□□ -0.52
ITSN1-222	ENST00000462212	UNC5CL	Q8IV45	518 aa		11.79	□□□□□ -0.52
ITSN1-222	ENST00000462212	ZNF692	Q9BU19	519 aa	Predicted RBP	11.79	□□□□□ -0.52
ITSN1-222	ENST00000462212	RGS12	O14924	1447 aa		11.78	□□□□□ -0.52
ITSN1-222	ENST00000462212	CD163L1	Q9NR16	1453 aa		11.78	□□□□□ -0.52
ITSN1-222	ENST00000462212	COL14A1	Q05707	1796 aa	Known RBP	11.78	□□□□□ -0.52
ITSN1-222	ENST00000462212	ABTB2	Q8N961	1025 aa		11.78	□□□□□ -0.52
ITSN1-222	ENST00000462212	NRK	Q7Z2Y5	1582 aa		11.78	□□□□□ -0.52
ITSN1-222	ENST00000462212	MON2	Q7Z3U7	1717 aa		11.77	□□□□□ -0.52
ITSN1-222	ENST00000462212	MSH5	O43196	834 aa		11.77	□□□□□ -0.53
ITSN1-222	ENST00000462212	PLEKHG5	O94827	1062 aa		11.77	□□□□□ -0.53
ITSN1-222	ENST00000462212	PIK3C2A	O00443	1686 aa		11.77	□□□□□ -0.53
ITSN1-222	ENST00000462212	NRAP	Q86VF7	1730 aa		11.77	□□□□□ -0.53
ITSN1-222	ENST00000462212	NUTM2G	Q5VZR2	741 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	NLRP13	Q86W25	1043 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	GJD4	Q96KN9	370 aa	Predicted RBP	11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	TTC21B	Q7Z4L5	1316 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	TTC21A	Q8NDW8	1320 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	CPD	O75976	1380 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	KIAA0232	Q92628	1395 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	NINL	Q9Y2I6	1382 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	SLIT3	O75094	1523 aa		11.76	□□□□□ -0.53
ITSN1-222	ENST00000462212	GLI3	P10071	1580 aa		11.75	□□□□□ -0.53
ITSN1-222	ENST00000462212	VPS72	Q15906	364 aa		11.75	□□□□□ -0.53
ITSN1-222	ENST00000462212	KTN1	Q86UP2	1357 aa	Known RBP	11.75	□□□□□ -0.53
ITSN1-222	ENST00000462212	SLC12A5	Q9H2X9	1139 aa		11.74	□□□□□ -0.53
ITSN1-222	ENST00000462212	PRDM11	Q9NQV5	511 aa		11.74	□□□□□ -0.53
ITSN1-222	ENST00000462212		A0A1W2PP64	1363 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	GC	P02774	474 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	NLRP6	P59044	892 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	TMF1	P82094	1093 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	TMC1	Q8TDI8	760 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	BTG4	Q9NY30	223 aa		11.73	□□□□□ -0.53
ITSN1-222	ENST00000462212	USP54	Q70EL1	1684 aa		11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	LMO7	Q8WWI1	1683 aa		11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	EDC4	Q6P2E9	1401 aa	Known RBP	11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	USP31	Q70CQ4	1352 aa		11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	ZC3H6	P61129	1189 aa	Known RBP	11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	TERF2IP	Q9NYB0	399 aa		11.72	□□□□□ -0.53
ITSN1-222	ENST00000462212	ONECUT3	O60422	494 aa	Predicted RBP	11.71	□□□□□ -0.53
ITSN1-222	ENST00000462212	CHRNA2	Q15822	529 aa		11.71	□□□□□ -0.53
ITSN1-222	ENST00000462212	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.71	□□□□□ -0.53
ITSN1-222	ENST00000462212	CDCA8	Q53HL2	280 aa		11.7	□□□□□ -0.54
ITSN1-222	ENST00000462212	CAMTA1	Q9Y6Y1	1673 aa		11.7	□□□□□ -0.54
ITSN1-222	ENST00000462212	ANKRD36B	Q8N2N9	1353 aa		11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	SPATA31A5	Q5VU36	1347 aa		11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	SPATA31A7	Q8IWB4	1347 aa		11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	NFAT5	O94916	1531 aa		11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	COL18A1	P39060	1754 aa		11.69	□□□□□ -0.54
ITSN1-222	ENST00000462212	AATK	Q6ZMQ8	1374 aa		11.68	□□□□□ -0.54
ITSN1-222	ENST00000462212	ARHGEF25	Q86VW2	580 aa		11.68	□□□□□ -0.54
ITSN1-222	ENST00000462212	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
ITSN1-222	ENST00000462212	KCNH5	Q8NCM2	988 aa		11.68	□□□□□ -0.54
ITSN1-222	ENST00000462212	MYOM1	P52179	1685 aa		11.68	□□□□□ -0.54
ITSN1-222	ENST00000462212	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	NME9	Q86XW9	330 aa		11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	ZRANB1	Q9UGI0	708 aa		11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	CCDC9	Q9Y3X0	531 aa	Known RBP	11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	COL5A2	P05997	1499 aa	Predicted RBP	11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	OVOS2	A0A0J9YW53	1432 aa		11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	OVOS2	Q6IE36	1432 aa		11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	BRWD3	Q6RI45	1802 aa		11.67	□□□□□ -0.54
ITSN1-222	ENST00000462212	ABCC6	O95255	1503 aa		11.66	□□□□□ -0.54
ITSN1-222	ENST00000462212	SPATA31A1	Q5TZJ5	1347 aa		11.66	□□□□□ -0.54
ITSN1-222	ENST00000462212	THSD7A	Q9UPZ6	1657 aa		11.66	□□□□□ -0.54
ITSN1-222	ENST00000462212	HSPA5	P11021	654 aa	Known RBP	11.66	□□□□□ -0.54
ITSN1-222	ENST00000462212	SEPT12	Q8IYM1	358 aa		11.66	□□□□□ -0.54
ITSN1-222	ENST00000462212	STRN4	Q9NRL3	753 aa		11.65	□□□□□ -0.54
ITSN1-222	ENST00000462212	FAM98C	Q17RN3	349 aa	Known RBP	11.64	□□□□□ -0.55
ITSN1-222	ENST00000462212	LARP1	Q6PKG0	1096 aa	Known RBP	11.64	□□□□□ -0.55
ITSN1-222	ENST00000462212	AXIN2	Q9Y2T1	843 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms