RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 SRPK2P78362 688 aaKnown RBP27.19■■□□□ 1.94
VARS-220ENST00000461874 VPS72Q15906 364 aa27.19■■□□□ 1.94
VARS-220ENST00000461874 CABP2Q9NPB3 220 aa27.16■■□□□ 1.94
VARS-220ENST00000461874 TOPAZ1Q8N9V7 1692 aa27.15■■□□□ 1.94
VARS-220ENST00000461874 GLI3P10071 1580 aa27.15■■□□□ 1.94
VARS-220ENST00000461874 ROCK2O75116 1388 aaKnown RBP27.15■■□□□ 1.94
VARS-220ENST00000461874 TRIM26Q12899 539 aaPredicted RBP27.15■■□□□ 1.94
VARS-220ENST00000461874 TRPM1Q7Z4N2 1603 aa27.14■■□□□ 1.94
VARS-220ENST00000461874 NWD2Q9ULI1 1742 aa27.13■■□□□ 1.93
VARS-220ENST00000461874 PLCH1Q4KWH8 1693 aa27.12■■□□□ 1.93
VARS-220ENST00000461874 BTG4Q9NY30 223 aa27.12■■□□□ 1.93
VARS-220ENST00000461874 CCDC9Q9Y3X0 531 aaKnown RBP27.12■■□□□ 1.93
VARS-220ENST00000461874 PPIP5K1Q6PFW1 1433 aa27.12■■□□□ 1.93
VARS-220ENST00000461874 ONECUT3O60422 494 aaPredicted RBP27.1■■□□□ 1.93
VARS-220ENST00000461874 NUTM2GQ5VZR2 741 aa27.1■■□□□ 1.93
VARS-220ENST00000461874 QRICH2Q9H0J4 1663 aa27.1■■□□□ 1.93
VARS-220ENST00000461874 PRDM11Q9NQV5 511 aa27.09■■□□□ 1.93
VARS-220ENST00000461874 EVC2Q86UK5 1308 aa27.09■■□□□ 1.93
VARS-220ENST00000461874 SEPT12Q8IYM1 358 aa27.08■■□□□ 1.93
VARS-220ENST00000461874 CRYBG1Q9Y4K1 1723 aa27.07■■□□□ 1.92
VARS-220ENST00000461874 ABTB2Q8N961 1025 aa27.07■■□□□ 1.92
VARS-220ENST00000461874 CABP1Q9NZU7 370 aa27.07■■□□□ 1.92
VARS-220ENST00000461874 COL14A1Q05707 1796 aaKnown RBP27.07■■□□□ 1.92
VARS-220ENST00000461874 EP400Q96L91 3159 aa27.05■■□□□ 1.92
VARS-220ENST00000461874 KIAA0232Q92628 1395 aa27.05■■□□□ 1.92
VARS-220ENST00000461874 TONSLQ96HA7 1378 aa27.04■■□□□ 1.92
VARS-220ENST00000461874 BRD4O60885 1362 aaPredicted RBP27.03■■□□□ 1.92
VARS-220ENST00000461874 ZC3H6P61129 1189 aaKnown RBP27.03■■□□□ 1.92
VARS-220ENST00000461874 NRAPQ86VF7 1730 aa27.03■■□□□ 1.92
VARS-220ENST00000461874 CCDC125Q86Z20 511 aa27.03■■□□□ 1.92
VARS-220ENST00000461874 CHRNA2Q15822 529 aa27.01■■□□□ 1.91
VARS-220ENST00000461874 USP19O94966 1318 aa27■■□□□ 1.91
VARS-220ENST00000461874 SPATA31A5Q5VU36 1347 aa27■■□□□ 1.91
VARS-220ENST00000461874 SPATA31A7Q8IWB4 1347 aa27■■□□□ 1.91
VARS-220ENST00000461874 NLRP13Q86W25 1043 aa27■■□□□ 1.91
VARS-220ENST00000461874 CARD11Q9BXL7 1154 aa27■■□□□ 1.91
VARS-220ENST00000461874 FAM98CQ17RN3 349 aaKnown RBP26.99■■□□□ 1.91
VARS-220ENST00000461874 USP6P35125 1406 aa26.99■■□□□ 1.91
VARS-220ENST00000461874 PHRF1Q9P1Y6 1649 aaKnown RBP26.98■■□□□ 1.91
VARS-220ENST00000461874 KRT27Q7Z3Y8 459 aa26.97■■□□□ 1.91
VARS-220ENST00000461874 A0A0G2JS52 829 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 GCP02774 474 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 MYT1Q01538 1121 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 CPDO75976 1380 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 SBNO2Q9Y2G9 1366 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 BRWD3Q6RI45 1802 aa26.95■■□□□ 1.9
VARS-220ENST00000461874 SSH2Q76I76 1423 aa26.94■■□□□ 1.9
VARS-220ENST00000461874 ZNF692Q9BU19 519 aaPredicted RBP26.93■■□□□ 1.9
VARS-220ENST00000461874 STRN4Q9NRL3 753 aa26.93■■□□□ 1.9
VARS-220ENST00000461874 NRKQ7Z2Y5 1582 aa26.92■■□□□ 1.9
VARS-220ENST00000461874 SPATA31A1Q5TZJ5 1347 aa26.92■■□□□ 1.9
VARS-220ENST00000461874 BLMP54132 1417 aaPredicted RBP26.92■■□□□ 1.9
VARS-220ENST00000461874 NLRP6P59044 892 aa26.92■■□□□ 1.9
VARS-220ENST00000461874 EVA1CP58658 441 aa26.9■■□□□ 1.9
VARS-220ENST00000461874 TTC21BQ7Z4L5 1316 aa26.88■■□□□ 1.89
VARS-220ENST00000461874 CAMTA1Q9Y6Y1 1673 aa26.87■■□□□ 1.89
VARS-220ENST00000461874 CPSF1Q10570 1443 aaKnown RBP26.86■■□□□ 1.89
VARS-220ENST00000461874 SF3B2Q13435 895 aaKnown RBP26.85■■□□□ 1.89
VARS-220ENST00000461874 LARP1Q6PKG0 1096 aaKnown RBP26.85■■□□□ 1.89
VARS-220ENST00000461874 SLIT3O75094 1523 aa26.84■■□□□ 1.89
VARS-220ENST00000461874 THSD7AQ9UPZ6 1657 aa26.83■■□□□ 1.89
VARS-220ENST00000461874 USP35Q9P2H5 1018 aa26.83■■□□□ 1.89
VARS-220ENST00000461874 TTC21AQ8NDW8 1320 aa26.83■■□□□ 1.89
VARS-220ENST00000461874 KTN1Q86UP2 1357 aaKnown RBP26.83■■□□□ 1.88
VARS-220ENST00000461874 LMO7Q8WWI1 1683 aa26.82■■□□□ 1.88
VARS-220ENST00000461874 BARGINQ6ZT62 677 aa26.82■■□□□ 1.88
VARS-220ENST00000461874 DEFB132Q7Z7B7 95 aa26.82■■□□□ 1.88
VARS-220ENST00000461874 ZRANB1Q9UGI0 708 aa26.81■■□□□ 1.88
VARS-220ENST00000461874 PIK3C2AO00443 1686 aa26.81■■□□□ 1.88
VARS-220ENST00000461874 AATKQ6ZMQ8 1374 aa26.81■■□□□ 1.88
VARS-220ENST00000461874 ZBTB7CA1YPR0 619 aa26.8■■□□□ 1.88
VARS-220ENST00000461874 FAM182BQ5T319 152 aa26.8■■□□□ 1.88
VARS-220ENST00000461874 AKAP12Q02952 1782 aa26.79■■□□□ 1.88
VARS-220ENST00000461874 TCP11L2Q8N4U5 519 aa26.79■■□□□ 1.88
VARS-220ENST00000461874 PUS7Q96PZ0 661 aaKnown RBP26.79■■□□□ 1.88
VARS-220ENST00000461874 KCNH5Q8NCM2 988 aa26.78■■□□□ 1.88
VARS-220ENST00000461874 TMC1Q8TDI8 760 aa26.78■■□□□ 1.88
VARS-220ENST00000461874 COL5A2P05997 1499 aaPredicted RBP26.78■■□□□ 1.88
VARS-220ENST00000461874 TESK2Q96S53 571 aa26.77■■□□□ 1.88
VARS-220ENST00000461874 SLC12A5Q9H2X9 1139 aa26.77■■□□□ 1.88
VARS-220ENST00000461874 ST20-MTHFSA0A0A6YYL1 179 aa26.76■■□□□ 1.87
VARS-220ENST00000461874 THRAP3Q9Y2W1 955 aaKnown RBP26.76■■□□□ 1.87
VARS-220ENST00000461874 CD163L1Q9NR16 1453 aa26.75■■□□□ 1.87
VARS-220ENST00000461874 ARHGEF25Q86VW2 580 aa26.75■■□□□ 1.87
VARS-220ENST00000461874 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.74■■□□□ 1.87
VARS-220ENST00000461874 HDGFL2Q7Z4V5 671 aaPredicted RBP26.73■■□□□ 1.87
VARS-220ENST00000461874 AXIN2Q9Y2T1 843 aa26.73■■□□□ 1.87
VARS-220ENST00000461874 SOX12O15370 315 aa26.72■■□□□ 1.87
VARS-220ENST00000461874 BAG6P46379 1132 aa26.72■■□□□ 1.87
VARS-220ENST00000461874 FAM196AQ6ZSG2 479 aa26.72■■□□□ 1.87
VARS-220ENST00000461874 CRB1P82279 1406 aa26.72■■□□□ 1.87
VARS-220ENST00000461874 SLC24A1O60721 1099 aa26.71■■□□□ 1.87
VARS-220ENST00000461874 PDE3BQ13370 1112 aa26.71■■□□□ 1.87
VARS-220ENST00000461874 TERF2IPQ9NYB0 399 aa26.71■■□□□ 1.87
VARS-220ENST00000461874 USP31Q70CQ4 1352 aa26.71■■□□□ 1.87
VARS-220ENST00000461874 SRCAPQ6ZRS2 3230 aa26.7■■□□□ 1.87
VARS-220ENST00000461874 MON2Q7Z3U7 1717 aa26.7■■□□□ 1.86
VARS-220ENST00000461874 NME9Q86XW9 330 aa26.69■■□□□ 1.86
VARS-220ENST00000461874 COL18A1P39060 1754 aa26.69■■□□□ 1.86
VARS-220ENST00000461874 TOM1L2Q6ZVM7 507 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms