RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 CDK19Q9BWU1 502 aa20.97■□□□□ 0.95
TMEM39A-203ENST00000461654 BCL9LQ86UU0 1499 aa20.96■□□□□ 0.95
TMEM39A-203ENST00000461654 ATRNO75882 1429 aa20.95■□□□□ 0.95
TMEM39A-203ENST00000461654 MARF1Q9Y4F3 1742 aaKnown RBP20.95■□□□□ 0.94
TMEM39A-203ENST00000461654 ATP7BP35670 1465 aa20.95■□□□□ 0.94
TMEM39A-203ENST00000461654 NGDNQ8NEJ9 315 aaKnown RBP20.94■□□□□ 0.94
TMEM39A-203ENST00000461654 CCDC61Q9Y6R9 512 aa20.94■□□□□ 0.94
TMEM39A-203ENST00000461654 SLIT2O94813 1529 aa20.93■□□□□ 0.94
TMEM39A-203ENST00000461654 PLEKHG3A1L390 1219 aa20.92■□□□□ 0.94
TMEM39A-203ENST00000461654 CABLES1Q8TDN4 633 aa20.92■□□□□ 0.94
TMEM39A-203ENST00000461654 RGS12O14924 1447 aa20.92■□□□□ 0.94
TMEM39A-203ENST00000461654 TRPM3Q9HCF6 1732 aaPredicted RBP20.92■□□□□ 0.94
TMEM39A-203ENST00000461654 LMOD2Q6P5Q4 547 aa20.91■□□□□ 0.94
TMEM39A-203ENST00000461654 UNC5CLQ8IV45 518 aa20.91■□□□□ 0.94
TMEM39A-203ENST00000461654 UPF1Q92900 1129 aaKnown RBP eCLIP20.91■□□□□ 0.94
TMEM39A-203ENST00000461654 QRICH2Q9H0J4 1663 aa20.91■□□□□ 0.94
TMEM39A-203ENST00000461654 POLR3AO14802 1390 aaPredicted RBP20.9■□□□□ 0.94
TMEM39A-203ENST00000461654 EVC2Q86UK5 1308 aa20.9■□□□□ 0.94
TMEM39A-203ENST00000461654 HAP1P54257 671 aaPredicted RBP20.9■□□□□ 0.94
TMEM39A-203ENST00000461654 ITSN1Q15811 1721 aa20.9■□□□□ 0.94
TMEM39A-203ENST00000461654 GJD4Q96KN9 370 aaPredicted RBP20.89■□□□□ 0.93
TMEM39A-203ENST00000461654 ALS2Q96Q42 1657 aa20.88■□□□□ 0.93
TMEM39A-203ENST00000461654 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.87■□□□□ 0.93
TMEM39A-203ENST00000461654 ACEP12821 1306 aa20.86■□□□□ 0.93
TMEM39A-203ENST00000461654 FAM83GA6ND36 823 aa20.85■□□□□ 0.93
TMEM39A-203ENST00000461654 PUS7Q96PZ0 661 aaKnown RBP20.85■□□□□ 0.93
TMEM39A-203ENST00000461654 TOPAZ1Q8N9V7 1692 aa20.85■□□□□ 0.93
TMEM39A-203ENST00000461654 ABCA3Q99758 1704 aa20.84■□□□□ 0.93
TMEM39A-203ENST00000461654 PAK3O75914 559 aaPredicted RBP20.84■□□□□ 0.93
TMEM39A-203ENST00000461654 SRPK2P78362 688 aaKnown RBP20.84■□□□□ 0.93
TMEM39A-203ENST00000461654 ANP32CO43423 234 aa20.83■□□□□ 0.93
TMEM39A-203ENST00000461654 VPS72Q15906 364 aa20.83■□□□□ 0.93
TMEM39A-203ENST00000461654 CABP2Q9NPB3 220 aa20.82■□□□□ 0.92
TMEM39A-203ENST00000461654 NWD2Q9ULI1 1742 aa20.81■□□□□ 0.92
TMEM39A-203ENST00000461654 PLEKHG5O94827 1062 aa20.81■□□□□ 0.92
TMEM39A-203ENST00000461654 BRD4O60885 1362 aaPredicted RBP20.81■□□□□ 0.92
TMEM39A-203ENST00000461654 ONECUT3O60422 494 aaPredicted RBP20.8■□□□□ 0.92
TMEM39A-203ENST00000461654 PPIP5K1Q6PFW1 1433 aa20.79■□□□□ 0.92
TMEM39A-203ENST00000461654 ATAD2Q6PL18 1390 aa20.79■□□□□ 0.92
TMEM39A-203ENST00000461654 MIER1Q8N108 512 aa20.78■□□□□ 0.92
TMEM39A-203ENST00000461654 CRYBG1Q9Y4K1 1723 aa20.78■□□□□ 0.92
TMEM39A-203ENST00000461654 PLCH1Q4KWH8 1693 aa20.77■□□□□ 0.92
TMEM39A-203ENST00000461654 GLI3P10071 1580 aa20.77■□□□□ 0.92
TMEM39A-203ENST00000461654 CABP1Q9NZU7 370 aa20.77■□□□□ 0.92
TMEM39A-203ENST00000461654 TMC1Q8TDI8 760 aa20.76■□□□□ 0.91
TMEM39A-203ENST00000461654 PANK3Q9H999 370 aa20.76■□□□□ 0.91
TMEM39A-203ENST00000461654 BTG4Q9NY30 223 aa20.76■□□□□ 0.91
TMEM39A-203ENST00000461654 COL14A1Q05707 1796 aaKnown RBP20.75■□□□□ 0.91
TMEM39A-203ENST00000461654 ABTB2Q8N961 1025 aa20.75■□□□□ 0.91
TMEM39A-203ENST00000461654 NINLQ9Y2I6 1382 aa20.74■□□□□ 0.91
TMEM39A-203ENST00000461654 PRDM11Q9NQV5 511 aa20.73■□□□□ 0.91
TMEM39A-203ENST00000461654 NLRP13Q86W25 1043 aa20.72■□□□□ 0.91
TMEM39A-203ENST00000461654 ZNF692Q9BU19 519 aaPredicted RBP20.72■□□□□ 0.91
TMEM39A-203ENST00000461654 USP19O94966 1318 aa20.72■□□□□ 0.91
TMEM39A-203ENST00000461654 KIAA0232Q92628 1395 aa20.72■□□□□ 0.91
TMEM39A-203ENST00000461654 USP6P35125 1406 aa20.71■□□□□ 0.91
TMEM39A-203ENST00000461654 NUTM2GQ5VZR2 741 aa20.71■□□□□ 0.91
TMEM39A-203ENST00000461654 CCDC125Q86Z20 511 aa20.71■□□□□ 0.91
TMEM39A-203ENST00000461654 SEPT12Q8IYM1 358 aa20.71■□□□□ 0.91
TMEM39A-203ENST00000461654 SSH2Q76I76 1423 aa20.7■□□□□ 0.9
TMEM39A-203ENST00000461654 NRAPQ86VF7 1730 aa20.7■□□□□ 0.9
TMEM39A-203ENST00000461654 CCDC9Q9Y3X0 531 aaKnown RBP20.7■□□□□ 0.9
TMEM39A-203ENST00000461654 KNSTRNQ9Y448 316 aa20.7■□□□□ 0.9
TMEM39A-203ENST00000461654 PHRF1Q9P1Y6 1649 aaKnown RBP20.69■□□□□ 0.9
TMEM39A-203ENST00000461654 CPDO75976 1380 aa20.69■□□□□ 0.9
TMEM39A-203ENST00000461654 SLC12A5Q9H2X9 1139 aa20.68■□□□□ 0.9
TMEM39A-203ENST00000461654 TERF2IPQ9NYB0 399 aa20.68■□□□□ 0.9
TMEM39A-203ENST00000461654 SPATA31A5Q5VU36 1347 aa20.68■□□□□ 0.9
TMEM39A-203ENST00000461654 SPATA31A7Q8IWB4 1347 aa20.68■□□□□ 0.9
TMEM39A-203ENST00000461654 MYOM1P52179 1685 aa20.67■□□□□ 0.9
TMEM39A-203ENST00000461654 GCP02774 474 aa20.67■□□□□ 0.9
TMEM39A-203ENST00000461654 ZC3H6P61129 1189 aaKnown RBP20.67■□□□□ 0.9
TMEM39A-203ENST00000461654 CPSF1Q10570 1443 aaKnown RBP20.66■□□□□ 0.9
TMEM39A-203ENST00000461654 KTN1Q86UP2 1357 aaKnown RBP20.65■□□□□ 0.9
TMEM39A-203ENST00000461654 PER1O15534 1290 aaPredicted RBP20.65■□□□□ 0.9
TMEM39A-203ENST00000461654 CHRNA2Q15822 529 aa20.65■□□□□ 0.9
TMEM39A-203ENST00000461654 HDGFL2Q7Z4V5 671 aaPredicted RBP20.65■□□□□ 0.9
TMEM39A-203ENST00000461654 NRKQ7Z2Y5 1582 aa20.64■□□□□ 0.9
TMEM39A-203ENST00000461654 ANKRD36BQ8N2N9 1353 aa20.64■□□□□ 0.89
TMEM39A-203ENST00000461654 NLRP6P59044 892 aa20.64■□□□□ 0.89
TMEM39A-203ENST00000461654 PRKRIP1Q9H875 184 aaPredicted RBP20.64■□□□□ 0.89
TMEM39A-203ENST00000461654 CNGB1Q14028 1251 aaPredicted RBP20.63■□□□□ 0.89
TMEM39A-203ENST00000461654 FAM98CQ17RN3 349 aaKnown RBP20.63■□□□□ 0.89
TMEM39A-203ENST00000461654 KRT27Q7Z3Y8 459 aa20.63■□□□□ 0.89
TMEM39A-203ENST00000461654 SPATA31A1Q5TZJ5 1347 aa20.62■□□□□ 0.89
TMEM39A-203ENST00000461654 TTC21BQ7Z4L5 1316 aa20.62■□□□□ 0.89
TMEM39A-203ENST00000461654 CCER2I3L3R5 266 aa20.62■□□□□ 0.89
TMEM39A-203ENST00000461654 RALBP1Q15311 655 aa20.62■□□□□ 0.89
TMEM39A-203ENST00000461654 TTC21AQ8NDW8 1320 aa20.61■□□□□ 0.89
TMEM39A-203ENST00000461654 BRWD3Q6RI45 1802 aa20.61■□□□□ 0.89
TMEM39A-203ENST00000461654 SLIT3O75094 1523 aa20.6■□□□□ 0.89
TMEM39A-203ENST00000461654 EVA1CP58658 441 aa20.6■□□□□ 0.89
TMEM39A-203ENST00000461654 CAMTA1Q9Y6Y1 1673 aa20.6■□□□□ 0.89
TMEM39A-203ENST00000461654 STRN4Q9NRL3 753 aa20.59■□□□□ 0.89
TMEM39A-203ENST00000461654 BLMP54132 1417 aaPredicted RBP20.59■□□□□ 0.89
TMEM39A-203ENST00000461654 AKAP12Q02952 1782 aa20.59■□□□□ 0.89
TMEM39A-203ENST00000461654 LMO7Q8WWI1 1683 aa20.58■□□□□ 0.89
TMEM39A-203ENST00000461654 CC2D1BQ5T0F9 858 aaKnown RBP20.58■□□□□ 0.89
TMEM39A-203ENST00000461654 BARGINQ6ZT62 677 aa20.58■□□□□ 0.89
TMEM39A-203ENST00000461654 CARD14Q9BXL6 1004 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms