RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 KTN1Q86UP2 1357 aaKnown RBP11.07□□□□□ -0.64
HDAC9-219ENST00000461159 TNNT2P45379 298 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-219ENST00000461159 SLIT1O75093 1534 aa11.06□□□□□ -0.64
HDAC9-219ENST00000461159 CANXP27824 592 aaKnown RBP11.06□□□□□ -0.64
HDAC9-219ENST00000461159 ABCC11Q96J66 1382 aa11.06□□□□□ -0.64
HDAC9-219ENST00000461159 TPRNQ4KMQ1 711 aa11.05□□□□□ -0.64
HDAC9-219ENST00000461159 FTSJ3Q8IY81 847 aaKnown RBP11.05□□□□□ -0.64
HDAC9-219ENST00000461159 IPO9Q96P70 1041 aaKnown RBP11.05□□□□□ -0.64
HDAC9-219ENST00000461159 CABP1Q9NZU7 370 aa11.05□□□□□ -0.64
HDAC9-219ENST00000461159 RNF123Q5XPI4 1314 aa11.05□□□□□ -0.64
HDAC9-219ENST00000461159 TBX22Q9Y458 520 aa11.05□□□□□ -0.64
HDAC9-219ENST00000461159 USP35Q9P2H5 1018 aa11.04□□□□□ -0.64
HDAC9-219ENST00000461159 PARD3Q8TEW0 1356 aa11.03□□□□□ -0.64
HDAC9-219ENST00000461159 PAK3O75914 559 aaPredicted RBP11.03□□□□□ -0.64
HDAC9-219ENST00000461159 ZBTB47Q9UFB7 747 aaPredicted RBP11.03□□□□□ -0.64
HDAC9-219ENST00000461159 WASLO00401 505 aaPredicted RBP11.02□□□□□ -0.65
HDAC9-219ENST00000461159 MED14O60244 1454 aa11.01□□□□□ -0.65
HDAC9-219ENST00000461159 MYBBP1AQ9BQG0 1328 aaKnown RBP11.01□□□□□ -0.65
HDAC9-219ENST00000461159 RALBP1Q15311 655 aa11.01□□□□□ -0.65
HDAC9-219ENST00000461159 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.01□□□□□ -0.65
HDAC9-219ENST00000461159 PNISRQ8TF01 805 aaKnown RBP11□□□□□ -0.65
HDAC9-219ENST00000461159 NUDT16Q96DE0 195 aaKnown RBP11□□□□□ -0.65
HDAC9-219ENST00000461159 NSD3Q9BZ95 1437 aa11□□□□□ -0.65
HDAC9-219ENST00000461159 FBLN1P23142 703 aa11□□□□□ -0.65
HDAC9-219ENST00000461159 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11□□□□□ -0.65
HDAC9-219ENST00000461159 PMFBP1Q8TBY8 1022 aa11□□□□□ -0.65
HDAC9-219ENST00000461159 SECISBP2LQ93073 1101 aaKnown RBP10.99□□□□□ -0.65
HDAC9-219ENST00000461159 GGNBP2Q9H3C7 697 aa10.99□□□□□ -0.65
HDAC9-219ENST00000461159 PRR36Q9H6K5 1346 aa10.99□□□□□ -0.65
HDAC9-219ENST00000461159 A0A1W2PP64 1363 aa10.99□□□□□ -0.65
HDAC9-219ENST00000461159 NPHP4O75161 1426 aaPredicted RBP10.98□□□□□ -0.65
HDAC9-219ENST00000461159 NCLP19338 710 aaKnown RBP10.98□□□□□ -0.65
HDAC9-219ENST00000461159 HSP90AA1P07900 732 aaKnown RBP10.98□□□□□ -0.65
HDAC9-219ENST00000461159 BRPF3Q9ULD4 1205 aa10.98□□□□□ -0.65
HDAC9-219ENST00000461159 ZNF142P52746 1687 aaPredicted RBP10.98□□□□□ -0.65
HDAC9-219ENST00000461159 PPP2R1AP30153 589 aa10.97□□□□□ -0.65
HDAC9-219ENST00000461159 DLC1Q96QB1 1528 aa10.97□□□□□ -0.65
HDAC9-219ENST00000461159 TECPR2O15040 1411 aa10.97□□□□□ -0.65
HDAC9-219ENST00000461159 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-219ENST00000461159 NLRP13Q86W25 1043 aa10.97□□□□□ -0.65
HDAC9-219ENST00000461159 PPM1GO15355 546 aaPredicted RBP10.96□□□□□ -0.65
HDAC9-219ENST00000461159 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.65
HDAC9-219ENST00000461159 CCDC61Q9Y6R9 512 aa10.96□□□□□ -0.65
HDAC9-219ENST00000461159 CD163L1Q9NR16 1453 aa10.96□□□□□ -0.65
HDAC9-219ENST00000461159 FAM135BQ49AJ0 1406 aa10.96□□□□□ -0.65
HDAC9-219ENST00000461159 BRD4O60885 1362 aaPredicted RBP10.96□□□□□ -0.65
HDAC9-219ENST00000461159 ATAD2Q6PL18 1390 aa10.96□□□□□ -0.65
HDAC9-219ENST00000461159 MORC1Q86VD1 984 aa10.95□□□□□ -0.66
HDAC9-219ENST00000461159 TERF2IPQ9NYB0 399 aa10.95□□□□□ -0.66
HDAC9-219ENST00000461159 PPIP5K1Q6PFW1 1433 aa10.95□□□□□ -0.66
HDAC9-219ENST00000461159 ANKRD36BQ8N2N9 1353 aa10.95□□□□□ -0.66
HDAC9-219ENST00000461159 RNF216Q9NWF9 866 aaPredicted RBP10.95□□□□□ -0.66
HDAC9-219ENST00000461159 CPS1P31327 1500 aa10.95□□□□□ -0.66
HDAC9-219ENST00000461159 TCERG1O14776 1098 aaKnown RBP10.94□□□□□ -0.66
HDAC9-219ENST00000461159 HDGFL2Q7Z4V5 671 aaPredicted RBP10.94□□□□□ -0.66
HDAC9-219ENST00000461159 PROSER2Q86WR7 435 aaPredicted RBP10.94□□□□□ -0.66
HDAC9-219ENST00000461159 SIRT1Q96EB6 747 aa10.94□□□□□ -0.66
HDAC9-219ENST00000461159 SOX12O15370 315 aa10.94□□□□□ -0.66
HDAC9-219ENST00000461159 PUS7Q96PZ0 661 aaKnown RBP10.94□□□□□ -0.66
HDAC9-219ENST00000461159 NPC1L1Q9UHC9 1359 aa10.94□□□□□ -0.66
HDAC9-219ENST00000461159 CGNL1Q0VF96 1302 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 FYB1O15117 783 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 KNDC1Q76NI1 1749 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 LMTK3Q96Q04 1460 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 NME9Q86XW9 330 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 ACEP12821 1306 aa10.93□□□□□ -0.66
HDAC9-219ENST00000461159 NEFMP07197 916 aa10.92□□□□□ -0.66
HDAC9-219ENST00000461159 RGS3P49796 1198 aa10.92□□□□□ -0.66
HDAC9-219ENST00000461159 RRP1P56182 461 aaKnown RBP10.91□□□□□ -0.66
HDAC9-219ENST00000461159 NUTM2GQ5VZR2 741 aa10.91□□□□□ -0.66
HDAC9-219ENST00000461159 NGDNQ8NEJ9 315 aaKnown RBP10.91□□□□□ -0.66
HDAC9-219ENST00000461159 ATP7BP35670 1465 aa10.91□□□□□ -0.66
HDAC9-219ENST00000461159 XPCQ01831 940 aaPredicted RBP10.91□□□□□ -0.66
HDAC9-219ENST00000461159 ADAMTS8Q9UP79 889 aa10.91□□□□□ -0.66
HDAC9-219ENST00000461159 PTCH1Q13635 1447 aa10.91□□□□□ -0.66
HDAC9-219ENST00000461159 ZNF335Q9H4Z2 1342 aaPredicted RBP10.9□□□□□ -0.66
HDAC9-219ENST00000461159 CHD2O14647 1828 aaKnown RBP10.9□□□□□ -0.66
HDAC9-219ENST00000461159 MS4A1P11836 297 aa10.9□□□□□ -0.66
HDAC9-219ENST00000461159 MTHFSP49914 203 aa10.9□□□□□ -0.66
HDAC9-219ENST00000461159 ESCO1Q5FWF5 840 aa10.9□□□□□ -0.66
HDAC9-219ENST00000461159 RGPD8O14715 1765 aaPredicted RBP10.9□□□□□ -0.66
HDAC9-219ENST00000461159 INSRP06213 1382 aa10.9□□□□□ -0.67
HDAC9-219ENST00000461159 PIK3R4Q99570 1358 aa10.9□□□□□ -0.67
HDAC9-219ENST00000461159 XRN1Q8IZH2 1706 aaKnown RBP10.9□□□□□ -0.67
HDAC9-219ENST00000461159 DIP2AQ14689 1571 aa10.89□□□□□ -0.67
HDAC9-219ENST00000461159 ORAI2Q96SN7 254 aa10.89□□□□□ -0.67
HDAC9-219ENST00000461159 USP32Q8NFA0 1604 aa10.89□□□□□ -0.67
HDAC9-219ENST00000461159 PDE3BQ13370 1112 aa10.89□□□□□ -0.67
HDAC9-219ENST00000461159 CNPY4Q8N129 248 aa10.88□□□□□ -0.67
HDAC9-219ENST00000461159 RCAN3Q9UKA8 241 aa10.88□□□□□ -0.67
HDAC9-219ENST00000461159 NKTRP30414 1462 aaKnown RBP10.88□□□□□ -0.67
HDAC9-219ENST00000461159 CCDC146Q8IYE0 955 aa10.88□□□□□ -0.67
HDAC9-219ENST00000461159 DDX17Q92841 729 aaKnown RBP10.88□□□□□ -0.67
HDAC9-219ENST00000461159 PDE4AP27815 886 aa10.87□□□□□ -0.67
HDAC9-219ENST00000461159 EXOC6Q8TAG9 804 aa10.87□□□□□ -0.67
HDAC9-219ENST00000461159 FOXO3O43524 673 aa10.87□□□□□ -0.67
HDAC9-219ENST00000461159 HMGB1P09429 215 aaKnown RBP10.87□□□□□ -0.67
HDAC9-219ENST00000461159 RRS1Q15050 365 aaKnown RBP10.87□□□□□ -0.67
HDAC9-219ENST00000461159 PDCL3Q9H2J4 239 aa10.87□□□□□ -0.67
HDAC9-219ENST00000461159 TMEM94Q12767 1356 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms